Query gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 480
No_of_seqs 171 out of 2497
Neff 6.5
Searched_HMMs 39220
Date Sun May 29 18:49:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780442.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01064 pyruv_kin pyruvate k 100.0 0 0 1235.4 43.5 467 5-472 1-513 (513)
2 PRK06354 pyruvate kinase; Prov 100.0 0 0 1205.8 52.0 475 4-480 7-485 (589)
3 PRK06247 pyruvate kinase; Prov 100.0 0 0 1194.0 54.2 477 1-479 1-477 (477)
4 PTZ00066 pyruvate kinase; Prov 100.0 0 0 1168.6 53.6 470 3-473 36-513 (513)
5 PRK09206 pyruvate kinase; Prov 100.0 0 0 1161.1 52.3 465 4-472 1-470 (470)
6 cd00288 Pyruvate_Kinase Pyruva 100.0 0 0 1148.6 52.3 467 4-472 1-480 (480)
7 PRK05826 pyruvate kinase; Prov 100.0 0 0 1126.0 51.7 456 2-459 1-461 (461)
8 COG0469 PykF Pyruvate kinase [ 100.0 0 0 1110.5 48.2 471 1-472 1-477 (477)
9 PTZ00300 pyruvate kinase; Prov 100.0 0 0 1074.6 49.3 441 31-473 1-454 (454)
10 KOG2323 consensus 100.0 0 0 931.7 42.0 468 3-472 19-501 (501)
11 pfam00224 PK Pyruvate kinase, 100.0 0 0 890.0 36.1 339 4-343 1-347 (348)
12 PRK06739 pyruvate kinase; Vali 100.0 0 0 864.9 33.3 330 6-340 2-334 (352)
13 PRK08187 pyruvate kinase; Vali 100.0 0 0 722.6 33.7 328 4-339 132-590 (606)
14 pfam02887 PK_C Pyruvate kinase 100.0 1.4E-28 3.6E-33 230.6 15.2 116 356-471 1-117 (117)
15 PRK10558 alpha-dehydro-beta-de 98.7 2.9E-07 7.5E-12 73.2 10.4 88 213-314 145-240 (256)
16 TIGR03239 GarL 2-dehydro-3-deo 98.7 3.4E-07 8.6E-12 72.8 10.5 89 212-314 137-233 (249)
17 pfam03328 HpcH_HpaI HpcH/HpaI 98.5 1.5E-06 3.8E-11 68.1 9.3 123 181-310 79-218 (221)
18 PRK10128 putative aldolase; Pr 98.5 3E-06 7.6E-11 65.8 10.4 89 212-314 127-223 (250)
19 COG3836 HpcH 2,4-dihydroxyhept 97.3 0.0018 4.6E-08 45.3 8.1 89 212-314 143-239 (255)
20 pfam02896 PEP-utilizers_C PEP- 97.0 0.012 2.9E-07 39.3 9.6 148 167-335 116-291 (292)
21 PRK05567 inositol-5'-monophosp 96.4 0.097 2.5E-06 32.5 10.9 121 173-311 227-360 (486)
22 cd00381 IMPDH IMPDH: The catal 96.4 0.058 1.5E-06 34.2 9.7 121 172-311 92-226 (325)
23 PRK08227 aldolase; Validated 96.3 0.054 1.4E-06 34.4 9.1 187 218-432 66-267 (291)
24 COG2301 CitE Citrate lyase bet 96.3 0.012 3.2E-07 39.1 5.7 128 176-310 70-212 (283)
25 pfam08981 consensus 96.2 0.026 6.6E-07 36.7 7.1 104 355-459 9-154 (181)
26 TIGR01588 citE citrate lyase, 96.2 0.016 4.1E-07 38.2 6.0 152 172-338 71-240 (288)
27 PRK00073 pgk phosphoglycerate 95.9 0.15 3.9E-06 31.1 9.9 308 19-402 39-369 (391)
28 PRK11177 phosphoenolpyruvate-p 95.8 0.12 3.2E-06 31.7 9.1 126 174-311 372-526 (575)
29 TIGR01302 IMP_dehydrog inosine 95.6 0.042 1.1E-06 35.2 6.0 253 28-311 57-371 (476)
30 TIGR01418 PEP_synth phosphoeno 95.5 0.24 6.2E-06 29.6 11.8 124 190-332 724-874 (877)
31 TIGR02311 HpaI 2,4-dihydroxyhe 95.3 0.018 4.5E-07 37.9 3.2 93 176-273 78-207 (249)
32 PRK11061 fused phosphoenolpyru 95.2 0.25 6.4E-06 29.5 9.0 132 168-311 531-692 (748)
33 PRK05458 guanosine 5'-monophos 95.0 0.35 8.8E-06 28.4 10.2 127 170-312 93-231 (326)
34 PRK01222 N-(5'-phosphoribosyl) 94.8 0.39 9.8E-06 28.1 12.2 26 18-43 11-36 (212)
35 cd00958 DhnA Class I fructose- 94.8 0.39 1E-05 28.0 9.8 153 224-398 18-183 (235)
36 pfam00478 IMPDH IMP dehydrogen 94.5 0.46 1.2E-05 27.5 11.7 125 172-311 221-355 (467)
37 COG1751 Uncharacterized conser 94.4 0.27 6.9E-06 29.2 7.5 107 353-459 9-155 (186)
38 PTZ00005 phosphoglycerate kina 94.3 0.49 1.3E-05 27.3 12.7 321 19-404 46-398 (419)
39 PTZ00314 inosine-5'-monophosph 94.1 0.54 1.4E-05 27.0 11.0 124 173-311 237-370 (499)
40 PRK07807 inositol-5-monophosph 94.1 0.17 4.4E-06 30.7 6.0 122 172-311 225-359 (479)
41 cd04730 NPD_like 2-Nitropropan 94.1 0.55 1.4E-05 27.0 11.4 110 176-311 70-185 (236)
42 pfam00478 IMPDH IMP dehydrogen 93.5 0.27 7E-06 29.2 6.1 113 198-333 191-324 (467)
43 PRK06464 phosphoenolpyruvate s 93.5 0.69 1.8E-05 26.2 12.1 30 249-278 393-435 (794)
44 PRK08649 inositol-5-monophosph 93.4 0.71 1.8E-05 26.1 8.1 123 172-310 138-283 (368)
45 PRK02621 consensus 93.2 0.43 1.1E-05 27.7 6.7 34 176-210 86-121 (254)
46 PTZ00314 inosine-5'-monophosph 93.1 0.43 1.1E-05 27.7 6.6 113 198-331 206-337 (499)
47 cd02911 arch_FMN Archeal FMN-b 92.7 0.35 8.8E-06 28.4 5.6 68 179-250 157-228 (233)
48 cd00381 IMPDH IMPDH: The catal 92.5 0.49 1.3E-05 27.3 6.2 143 156-327 30-189 (325)
49 PRK07226 fructose-bisphosphate 92.0 1.1 2.7E-05 24.8 10.3 152 225-400 37-202 (266)
50 PRK05567 inositol-5'-monophosp 91.8 0.72 1.8E-05 26.1 6.3 111 198-329 196-325 (486)
51 PRK07107 inositol-5-monophosph 91.8 0.49 1.3E-05 27.3 5.5 113 183-311 251-381 (497)
52 TIGR03586 PseI pseudaminic aci 91.3 1.2 3.1E-05 24.4 7.1 97 200-322 77-176 (327)
53 cd02801 DUS_like_FMN Dihydrour 91.1 0.79 2E-05 25.8 6.0 64 183-248 147-219 (231)
54 pfam03102 NeuB NeuB family. Ne 91.1 1.3 3.3E-05 24.2 7.4 100 198-323 54-156 (240)
55 PRK10415 tRNA-dihydrouridine s 91.1 0.64 1.6E-05 26.5 5.5 69 178-248 153-230 (321)
56 PRK01261 aroD 3-dehydroquinate 90.8 1.4 3.6E-05 23.9 8.3 130 174-323 63-218 (228)
57 PRK06843 inositol-5-monophosph 90.1 1.4 3.6E-05 24.0 6.5 120 175-311 154-285 (404)
58 PRK06381 threonine synthase; V 90.1 1.6 4.1E-05 23.5 10.5 41 235-278 166-206 (319)
59 TIGR00737 nifR3_yhdG putative 89.3 0.95 2.4E-05 25.2 5.2 98 180-300 166-275 (336)
60 PRK02290 3-dehydroquinate synt 89.1 1.9 4.7E-05 23.0 11.1 204 173-406 13-267 (347)
61 TIGR03569 NeuB_NnaB N-acetylne 89.1 1.9 4.8E-05 23.0 8.0 98 199-322 75-177 (329)
62 PRK11815 tRNA-dihydrouridine s 88.7 0.94 2.4E-05 25.2 4.7 90 182-299 159-268 (333)
63 pfam01959 DHQS 3-dehydroquinat 88.5 2 5.2E-05 22.8 12.2 201 176-406 14-263 (343)
64 cd04740 DHOD_1B_like Dihydroor 88.5 2 5.2E-05 22.7 9.4 17 427-443 270-286 (296)
65 PRK09932 glycerate kinase II; 88.1 1.2 3.2E-05 24.3 5.1 65 213-280 262-326 (381)
66 PRK06260 threonine synthase; V 87.9 2.2 5.6E-05 22.5 9.8 53 397-456 313-369 (400)
67 TIGR02152 D_ribokin_bact ribok 87.7 2 5.2E-05 22.7 6.0 84 193-295 81-172 (303)
68 PRK00830 consensus 87.3 2.4 6.1E-05 22.2 7.0 12 21-32 38-49 (273)
69 PRK09279 pyruvate phosphate di 86.9 1.5 3.8E-05 23.7 4.9 31 213-245 535-565 (875)
70 pfam02595 Gly_kinase Glycerate 86.6 1.4 3.6E-05 23.9 4.7 103 167-276 210-322 (378)
71 PRK07565 dihydroorotate dehydr 86.1 2.7 6.9E-05 21.8 9.7 37 295-336 252-288 (333)
72 pfam04309 G3P_antiterm Glycero 85.7 2.9 7.3E-05 21.7 8.9 91 174-282 6-102 (174)
73 KOG2550 consensus 85.6 2.4 6E-05 22.3 5.4 123 173-312 250-384 (503)
74 pfam01207 Dus Dihydrouridine s 85.4 2.6 6.8E-05 21.9 5.5 63 182-248 146-219 (309)
75 COG0434 SgcQ Predicted TIM-bar 85.1 3 7.8E-05 21.5 9.2 77 187-269 177-260 (263)
76 TIGR02198 rfaE_dom_I rfaE bifu 84.8 1.4 3.6E-05 23.9 3.9 57 219-280 129-185 (321)
77 PRK02083 imidazole glycerol ph 84.7 3.2 8.1E-05 21.3 7.4 35 175-210 85-121 (253)
78 TIGR03151 enACPred_II putative 84.6 3.2 8.1E-05 21.3 10.0 109 177-311 78-190 (307)
79 TIGR01303 IMP_DH_rel_1 IMP deh 84.6 3.2 8.1E-05 21.3 6.4 112 186-311 237-358 (476)
80 PRK05096 guanosine 5'-monophos 83.9 3.4 8.7E-05 21.1 11.0 120 170-312 104-243 (347)
81 PRK08197 threonine synthase; V 83.8 3.4 8.7E-05 21.1 10.4 56 397-456 322-378 (402)
82 PRK13982 bifunctional SbtC-lik 83.6 3.5 8.9E-05 21.0 12.0 74 394-471 364-440 (476)
83 cd00984 DnaB_C DnaB helicase C 83.3 3.6 9.1E-05 20.9 7.5 57 252-311 145-205 (242)
84 KOG2335 consensus 83.0 2.1 5.3E-05 22.7 4.1 60 185-247 166-238 (358)
85 PRK05211 consensus 82.8 3.7 9.6E-05 20.8 8.0 27 11-37 68-94 (248)
86 PRK08318 dihydropyrimidine deh 82.7 3.8 9.6E-05 20.8 10.3 47 255-311 152-200 (413)
87 COG0042 tRNA-dihydrouridine sy 82.7 3.1 7.8E-05 21.4 4.9 89 182-299 160-262 (323)
88 COG0646 MetH Methionine syntha 82.0 4 0.0001 20.6 7.8 43 268-310 108-162 (311)
89 PRK02747 consensus 81.8 4 0.0001 20.6 7.6 33 177-210 87-121 (257)
90 PRK07259 dihydroorotate dehydr 81.1 4.3 0.00011 20.4 10.7 24 172-195 102-126 (301)
91 PRK13962 bifunctional phosphog 80.9 4.3 0.00011 20.3 10.5 100 19-130 41-147 (653)
92 PRK03512 thiamine-phosphate py 80.8 4.4 0.00011 20.3 7.4 50 15-64 17-66 (211)
93 PRK00286 xseA exodeoxyribonucl 80.3 4.5 0.00012 20.2 6.2 213 47-293 9-256 (443)
94 PRK10550 tRNA-dihydrouridine s 80.1 2.1 5.4E-05 22.6 3.3 65 182-248 156-230 (312)
95 PRK02048 4-hydroxy-3-methylbut 79.9 4.6 0.00012 20.1 5.5 51 19-72 43-93 (613)
96 PRK11143 glpQ glycerophosphodi 79.7 4.7 0.00012 20.1 6.1 88 228-329 266-357 (359)
97 TIGR00433 bioB biotin synthase 79.7 2.3 5.8E-05 22.4 3.4 47 7-55 155-213 (350)
98 cd00480 malate_synt Malate syn 79.6 4.8 0.00012 20.0 14.6 124 186-311 183-345 (511)
99 cd04739 DHOD_like Dihydroorota 79.4 4.8 0.00012 20.0 10.9 42 261-312 153-196 (325)
100 TIGR00612 ispG_gcpE 4-hydroxy- 79.3 4.8 0.00012 20.0 5.7 50 19-71 44-93 (633)
101 PRK04281 consensus 79.2 4.9 0.00012 19.9 7.4 36 175-211 85-122 (254)
102 PRK10342 glycerate kinase I; P 78.8 2.3 5.8E-05 22.4 3.2 107 167-280 210-327 (381)
103 PRK13655 phosphoenolpyruvate c 78.7 5 0.00013 19.8 6.4 143 187-335 123-298 (487)
104 COG3605 PtsP Signal transducti 78.2 5.2 0.00013 19.7 7.1 130 191-337 562-720 (756)
105 PRK05579 bifunctional phosphop 76.1 5.9 0.00015 19.3 11.8 70 395-471 296-368 (392)
106 pfam00311 PEPcase Phosphoenolp 75.7 6 0.00015 19.3 7.8 64 212-275 166-243 (500)
107 PRK02145 consensus 75.7 6 0.00015 19.3 7.9 13 198-210 237-249 (257)
108 pfam04477 consensus 75.4 6.1 0.00016 19.2 6.6 143 187-335 124-305 (498)
109 TIGR01380 glut_syn glutathione 75.4 3.2 8.1E-05 21.3 3.1 87 113-210 208-307 (322)
110 PRK06352 threonine synthase; V 75.2 6.2 0.00016 19.2 10.9 19 236-254 177-195 (351)
111 cd01563 Thr-synth_1 Threonine 74.3 6.5 0.00017 19.0 9.8 21 434-454 297-317 (324)
112 PRK08329 threonine synthase; V 74.2 6.5 0.00017 19.0 8.6 26 430-456 315-340 (348)
113 TIGR01046 S10_Arc_S20_Euk ribo 74.2 5.2 0.00013 19.8 4.0 34 34-73 3-36 (99)
114 PRK06721 threonine synthase; R 74.1 6.6 0.00017 19.0 10.5 17 236-252 177-193 (352)
115 cd00945 Aldolase_Class_I Class 74.1 6.6 0.00017 19.0 12.4 151 168-332 7-170 (201)
116 pfam03060 NPD 2-nitropropane d 73.7 6.7 0.00017 18.9 10.7 112 177-311 105-221 (330)
117 pfam00150 Cellulase Cellulase 73.7 6.7 0.00017 18.9 6.6 54 16-71 23-86 (276)
118 TIGR01038 L22_arch ribosomal p 72.7 2.7 6.9E-05 21.8 2.2 83 255-343 19-105 (151)
119 PRK00694 4-hydroxy-3-methylbut 71.8 7.4 0.00019 18.6 5.6 51 19-72 47-97 (606)
120 PRK05286 dihydroorotate dehydr 71.7 7.4 0.00019 18.6 8.1 16 295-310 298-313 (336)
121 COG2870 RfaE ADP-heptose synth 70.7 7.4 0.00019 18.6 4.1 16 23-38 57-72 (467)
122 cd04731 HisF The cyclase subun 70.5 7.9 0.0002 18.4 6.7 127 174-322 81-234 (243)
123 PRK01659 consensus 70.3 7.9 0.0002 18.4 7.4 33 177-210 87-121 (252)
124 PRK11449 putative deoxyribonuc 70.3 7.9 0.0002 18.4 8.6 109 166-277 12-134 (258)
125 PRK06835 DNA replication prote 69.5 8.2 0.00021 18.3 4.7 81 187-282 211-291 (330)
126 pfam00682 HMGL-like HMGL-like. 68.9 8.5 0.00022 18.2 14.5 183 170-375 10-210 (237)
127 PRK13597 imidazole glycerol ph 68.7 8.5 0.00022 18.2 7.6 128 175-322 86-236 (252)
128 COG2352 Ppc Phosphoenolpyruvat 68.5 8.6 0.00022 18.1 4.6 82 192-273 490-599 (910)
129 cd00405 PRAI Phosphoribosylant 68.3 8.7 0.00022 18.1 9.2 45 188-233 153-197 (203)
130 KOG3774 consensus 68.0 6.6 0.00017 19.0 3.4 43 9-56 211-253 (563)
131 COG1929 Glycerate kinase [Carb 67.5 4.4 0.00011 20.3 2.4 105 165-276 208-322 (378)
132 PHA01630 putative group 1 glyc 67.4 9.1 0.00023 18.0 4.4 59 192-251 151-227 (333)
133 cd02811 IDI-2_FMN Isopentenyl- 67.3 9.1 0.00023 18.0 6.5 18 295-312 193-210 (326)
134 PRK03220 consensus 67.1 9.1 0.00023 17.9 7.8 127 174-322 85-243 (257)
135 PRK00915 2-isopropylmalate syn 66.6 9.3 0.00024 17.9 13.6 152 170-334 22-191 (511)
136 cd04448 DEP_PIKfyve DEP (Dishe 65.3 9.7 0.00025 17.7 3.8 36 269-304 24-60 (81)
137 PRK10411 DNA-binding transcrip 65.1 10 0.00025 17.7 7.4 62 356-421 80-141 (240)
138 COG0595 mRNA degradation ribon 65.0 10 0.00025 17.6 7.1 181 224-418 213-413 (555)
139 PRK04761 ppnK inorganic polyph 64.9 8.5 0.00022 18.2 3.4 35 369-403 131-169 (246)
140 PRK12319 acetyl-CoA carboxylas 64.8 10 0.00026 17.6 4.8 42 33-76 72-113 (256)
141 PRK00009 phosphoenolpyruvate c 64.2 10 0.00026 17.5 7.2 88 188-275 494-610 (916)
142 PRK10737 FKBP-type peptidyl-pr 63.2 9.8 0.00025 17.7 3.5 89 85-176 50-147 (196)
143 TIGR00045 TIGR00045 glycerate 63.2 7.7 0.0002 18.5 3.0 66 213-281 265-330 (380)
144 TIGR02124 hypE hydrogenase exp 62.9 11 0.00028 17.4 6.4 70 42-128 105-176 (345)
145 PRK03501 ppnK inorganic polyph 62.8 9.9 0.00025 17.7 3.5 37 368-404 145-185 (264)
146 TIGR02418 acolac_catab acetola 62.7 6.6 0.00017 19.0 2.6 231 171-456 186-445 (553)
147 PRK09255 malate synthase; Vali 62.6 11 0.00028 17.3 11.7 117 186-311 204-366 (531)
148 PRK03708 ppnK inorganic polyph 62.3 10 0.00026 17.6 3.5 82 367-454 161-252 (278)
149 TIGR00854 pts-sorbose PTS syst 62.1 6.2 0.00016 19.2 2.3 22 17-38 83-104 (152)
150 TIGR02168 SMC_prok_B chromosom 61.7 11 0.00029 17.2 4.1 63 356-418 1106-1178(1191)
151 TIGR02707 butyr_kinase butyrat 61.2 6.4 0.00016 19.1 2.3 75 239-324 239-315 (353)
152 cd06446 Trp-synth_B Tryptophan 60.4 12 0.00031 17.1 9.4 24 430-456 333-357 (365)
153 KOG2178 consensus 60.2 10 0.00026 17.6 3.1 93 365-460 279-380 (409)
154 PRK08462 biotin carboxylase; V 60.1 12 0.00031 17.0 5.3 18 423-440 393-410 (446)
155 COG1830 FbaB DhnA-type fructos 59.9 12 0.00031 17.0 10.0 178 214-414 24-224 (265)
156 PRK09389 (R)-citramalate synth 59.7 12 0.00031 17.0 13.9 10 23-32 78-87 (487)
157 COG0061 nadF NAD kinase [Coenz 59.2 12 0.00031 17.0 3.4 39 366-404 160-202 (281)
158 COG1489 SfsA DNA-binding prote 59.1 13 0.00032 16.9 4.5 96 177-275 107-210 (235)
159 pfam02581 TMP-TENI Thiamine mo 59.1 13 0.00032 16.9 7.0 45 19-63 14-58 (180)
160 COG0574 PpsA Phosphoenolpyruva 59.1 13 0.00032 16.9 7.8 16 266-281 403-418 (740)
161 COG0502 BioB Biotin synthase a 58.8 13 0.00032 16.9 3.8 70 257-335 248-320 (335)
162 PRK06512 thiamine-phosphate py 58.5 13 0.00033 16.9 10.5 58 6-64 12-74 (221)
163 cd04442 DEP_1_DEP6 DEP (Dishev 58.1 12 0.0003 17.1 3.2 35 270-304 25-60 (82)
164 PRK02231 ppnK inorganic polyph 57.9 12 0.00031 17.0 3.2 37 367-403 151-191 (272)
165 COG1465 Predicted alternative 57.7 13 0.00034 16.8 5.5 38 369-406 258-296 (376)
166 PRK08116 hypothetical protein; 57.6 13 0.00034 16.7 6.5 85 183-282 133-217 (262)
167 PRK05585 yajC preprotein trans 57.1 13 0.00034 16.7 3.3 42 112-154 48-89 (107)
168 PRK10906 DNA-binding transcrip 56.8 14 0.00035 16.6 7.3 44 377-420 95-139 (252)
169 pfam02699 YajC Preprotein tran 56.6 14 0.00035 16.7 3.3 41 112-153 32-72 (83)
170 cd04441 DEP_2_DEP6 DEP (Dishev 56.5 13 0.00034 16.7 3.2 35 270-304 29-64 (85)
171 PRK05638 threonine synthase; V 56.4 14 0.00035 16.6 9.3 19 434-452 332-350 (443)
172 pfam04312 DUF460 Protein of un 56.2 8.7 0.00022 18.1 2.2 25 261-291 67-91 (138)
173 PRK09802 DNA-binding transcrip 56.1 14 0.00036 16.6 6.6 149 114-278 100-269 (269)
174 COG0135 TrpF Phosphoribosylant 55.9 14 0.00036 16.6 10.3 27 183-209 71-97 (208)
175 PRK04539 ppnK inorganic polyph 55.7 14 0.00036 16.6 3.2 37 367-403 176-216 (296)
176 PRK08417 dihydroorotase; Provi 55.6 14 0.00036 16.5 18.3 221 165-444 38-269 (387)
177 PRK05963 3-oxoacyl-(acyl carri 55.4 14 0.00036 16.5 3.6 65 402-468 256-326 (327)
178 pfam08541 ACP_syn_III_C 3-Oxoa 55.1 14 0.00037 16.5 4.1 29 426-454 48-76 (90)
179 PRK09258 3-oxoacyl-(acyl carri 55.0 15 0.00037 16.5 4.1 49 406-454 276-325 (339)
180 PRK01185 ppnK inorganic polyph 54.9 15 0.00037 16.4 3.7 37 367-403 153-193 (272)
181 PRK00043 thiE thiamine-phospha 54.7 15 0.00037 16.4 8.4 64 1-64 1-67 (210)
182 PRK06256 biotin synthase; Vali 54.3 15 0.00038 16.4 5.9 11 412-422 289-299 (325)
183 COG1674 FtsK DNA segregation A 54.2 15 0.00038 16.4 3.8 48 245-293 650-701 (858)
184 TIGR00739 yajC preprotein tran 54.2 14 0.00036 16.6 3.0 45 112-157 32-78 (86)
185 PRK05636 replicative DNA helic 54.1 15 0.00038 16.4 6.1 25 251-275 277-301 (507)
186 PRK13575 3-dehydroquinate dehy 53.8 15 0.00039 16.3 5.8 53 4-56 1-59 (238)
187 TIGR01139 cysK cysteine syntha 53.6 15 0.00039 16.3 9.8 97 346-442 29-132 (312)
188 pfam02662 FlpD Methyl-viologen 53.5 12 0.00031 17.0 2.6 25 290-314 38-62 (124)
189 PRK04885 ppnK inorganic polyph 52.6 16 0.0004 16.2 3.4 38 368-405 144-185 (265)
190 TIGR03127 RuMP_HxlB 6-phospho 52.5 12 0.00032 17.0 2.5 32 372-404 73-109 (179)
191 pfam09370 TIM-br_sig_trns TIM- 52.3 16 0.00041 16.2 7.9 117 173-322 137-255 (268)
192 cd04722 TIM_phosphate_binding 52.2 16 0.00041 16.1 16.4 51 18-68 13-64 (200)
193 PRK13508 tagatose-6-phosphate 51.9 16 0.00041 16.1 6.6 47 226-277 117-163 (309)
194 PRK02412 aroD 3-dehydroquinate 51.9 16 0.00041 16.1 8.4 53 269-331 196-249 (253)
195 cd02877 GH18_hevamine_XipI_cla 51.8 16 0.00041 16.1 3.9 118 176-330 13-147 (280)
196 TIGR01405 polC_Gram_pos DNA po 51.7 16 0.00041 16.1 3.2 22 213-236 406-427 (1264)
197 TIGR01949 AroFGH_arch predicte 51.7 16 0.00041 16.1 6.2 129 268-403 66-203 (259)
198 KOG1816 consensus 51.4 16 0.00042 16.1 5.0 78 71-153 100-183 (308)
199 cd05710 SIS_1 A subgroup of th 51.3 13 0.00032 16.9 2.4 32 373-405 49-85 (120)
200 PRK04452 acetyl-CoA decarbonyl 50.6 17 0.00043 16.0 8.4 89 180-278 82-183 (322)
201 pfam04551 GcpE GcpE protein. I 50.4 17 0.00043 15.9 6.4 240 184-462 41-300 (345)
202 PRK07709 fructose-bisphosphate 50.3 17 0.00044 15.9 6.9 219 19-285 6-242 (285)
203 KOG2683 consensus 50.1 17 0.00044 15.9 4.2 63 214-293 225-287 (305)
204 PRK01231 ppnK inorganic polyph 50.0 17 0.00044 15.9 3.4 79 367-454 170-262 (296)
205 PTZ00170 D-ribulose-5-phosphat 49.9 17 0.00044 15.9 12.1 137 176-334 76-221 (224)
206 pfam00455 DeoR Bacterial regul 49.8 17 0.00044 15.9 5.8 61 357-421 5-66 (157)
207 PRK13936 phosphoheptose isomer 49.6 17 0.00045 15.9 8.4 96 355-456 25-147 (197)
208 PRK01911 ppnK inorganic polyph 49.3 18 0.00045 15.8 3.3 35 368-402 170-208 (290)
209 PRK04759 consensus 49.2 18 0.00045 15.8 3.7 77 368-454 173-264 (294)
210 cd05014 SIS_Kpsf KpsF-like pro 49.1 14 0.00036 16.5 2.4 42 369-411 45-92 (128)
211 pfam05991 DUF901 Protein of un 49.0 18 0.00045 15.8 4.5 51 373-424 67-123 (166)
212 PRK05595 replicative DNA helic 49.0 18 0.00045 15.8 7.4 49 222-275 184-235 (444)
213 cd05005 SIS_PHI Hexulose-6-pho 48.8 15 0.00039 16.3 2.5 33 372-405 76-113 (179)
214 PRK00048 dihydrodipicolinate r 48.8 18 0.00046 15.8 5.5 72 226-319 60-131 (265)
215 PRK09289 riboflavin synthase s 48.8 18 0.00046 15.8 3.3 54 106-161 23-83 (198)
216 PRK10263 DNA translocase FtsK; 48.5 18 0.00046 15.7 4.2 82 251-340 1006-1092(1355)
217 PRK02645 ppnK inorganic polyph 48.4 18 0.00046 15.7 2.9 37 367-403 174-214 (304)
218 pfam04009 DUF356 Protein of un 48.3 18 0.00046 15.7 4.3 53 368-420 53-106 (107)
219 PTZ00178 60S ribosomal protein 48.1 14 0.00035 16.6 2.2 27 314-340 78-104 (177)
220 COG0710 AroD 3-dehydroquinate 48.1 18 0.00047 15.7 9.1 53 269-331 175-228 (231)
221 pfam02115 Rho_GDI RHO protein 48.0 18 0.00045 15.8 2.8 27 66-95 86-112 (201)
222 PRK12857 putative aldolase; Re 48.0 18 0.00047 15.7 7.0 219 20-285 7-241 (284)
223 TIGR03217 4OH_2_O_val_ald 4-hy 48.0 18 0.00047 15.7 6.3 145 170-333 20-184 (333)
224 PRK07591 threonine synthase; V 47.6 19 0.00048 15.6 9.4 54 396-456 333-390 (422)
225 COG1080 PtsA Phosphoenolpyruva 47.4 19 0.00048 15.6 9.5 103 177-280 376-507 (574)
226 COG0541 Ffh Signal recognition 47.2 19 0.00048 15.6 6.7 23 42-64 23-45 (451)
227 PRK12879 3-oxoacyl-(acyl carri 47.0 19 0.00048 15.6 4.6 44 425-472 282-325 (326)
228 COG1570 XseA Exonuclease VII, 47.0 12 0.00031 17.0 1.8 54 236-293 194-256 (440)
229 TIGR00747 fabH 3-oxoacyl-(acyl 46.7 19 0.00049 15.5 5.3 203 218-454 93-315 (329)
230 pfam01026 TatD_DNase TatD rela 46.0 20 0.0005 15.5 8.3 102 174-277 14-131 (255)
231 pfam01136 Peptidase_U32 Peptid 45.9 20 0.0005 15.5 5.4 20 186-208 14-33 (232)
232 pfam07722 Peptidase_C26 Peptid 45.8 20 0.00051 15.5 4.7 57 225-281 48-120 (219)
233 PRK11316 bifunctional heptose 45.6 20 0.00051 15.4 4.4 16 22-37 56-71 (473)
234 PRK06749 replicative DNA helic 45.4 20 0.00051 15.4 3.5 56 223-284 170-234 (428)
235 TIGR01026 fliI_yscN ATPase Fli 45.3 20 0.00051 15.4 3.9 91 64-159 31-128 (455)
236 TIGR00963 secA preprotein tran 45.3 7.3 0.00019 18.7 0.4 107 20-135 93-203 (904)
237 PRK08250 glutamine amidotransf 45.2 17 0.00043 16.0 2.3 52 229-280 39-97 (235)
238 PRK13937 phosphoheptose isomer 45.2 20 0.00052 15.4 7.8 52 355-406 24-86 (192)
239 pfam01876 RNase_P_p30 RNase P 45.1 20 0.00052 15.4 3.3 91 165-277 24-117 (152)
240 PRK11543 gutQ D-arabinose 5-ph 45.0 20 0.00052 15.4 3.3 46 190-240 93-138 (321)
241 PRK03378 ppnK inorganic polyph 45.0 20 0.00052 15.4 3.3 78 367-454 171-262 (292)
242 cd04443 DEP_GPR155 DEP (Dishev 44.9 20 0.00052 15.4 3.9 35 270-304 27-62 (83)
243 cd01311 PDC_hydrolase 2-pyrone 44.6 21 0.00053 15.3 6.1 20 294-313 168-187 (263)
244 cd00318 Phosphoglycerate_kinas 44.6 21 0.00053 15.3 8.9 317 19-402 35-375 (397)
245 KOG3303 consensus 44.5 12 0.00032 17.0 1.5 30 31-60 102-131 (192)
246 PRK13509 transcriptional repre 44.5 21 0.00053 15.3 7.4 20 115-134 88-107 (251)
247 pfam03437 BtpA BtpA family. Th 44.4 21 0.00053 15.3 8.0 70 181-255 166-245 (254)
248 cd04439 DEP_1_P-Rex DEP (Dishe 44.4 21 0.00053 15.3 3.9 35 270-304 25-60 (81)
249 PRK05724 acetyl-CoA carboxylas 44.2 21 0.00053 15.3 4.7 13 121-133 87-99 (318)
250 pfam01915 Glyco_hydro_3_C Glyc 44.2 21 0.00053 15.3 5.3 43 253-302 115-158 (223)
251 PRK03372 ppnK inorganic polyph 43.7 21 0.00054 15.2 3.3 36 368-403 178-217 (303)
252 cd00727 malate_synt_A Malate s 43.5 21 0.00055 15.2 5.1 115 188-311 185-345 (511)
253 PRK02155 ppnK inorganic polyph 43.5 21 0.00055 15.2 3.2 41 368-408 172-219 (291)
254 COG1167 ARO8 Transcriptional r 43.4 21 0.00055 15.2 7.5 32 435-472 403-435 (459)
255 TIGR00649 MG423 conserved hypo 43.4 8.6 0.00022 18.1 0.6 100 226-340 226-347 (593)
256 PRK05437 isopentenyl pyrophosp 43.1 22 0.00055 15.2 5.9 46 258-313 174-219 (351)
257 pfam02110 HK Hydroxyethylthiaz 43.0 22 0.00056 15.2 4.6 45 226-275 40-84 (246)
258 PRK09527 lacA galactoside O-ac 42.8 22 0.00056 15.1 4.5 137 3-142 2-156 (203)
259 COG4043 Preprotein translocase 42.8 14 0.00037 16.5 1.6 30 108-138 25-54 (111)
260 PRK07409 threonine synthase; V 42.7 22 0.00056 15.1 11.7 16 236-251 180-195 (350)
261 PRK13587 1-(5-phosphoribosyl)- 42.7 22 0.00056 15.1 7.1 123 174-319 86-229 (234)
262 cd04440 DEP_2_P-Rex DEP (Dishe 42.6 22 0.00056 15.1 3.8 35 270-304 34-69 (93)
263 COG1856 Uncharacterized homolo 42.5 22 0.00056 15.1 3.7 122 175-310 99-251 (275)
264 PRK07998 gatY putative fructos 41.9 23 0.00057 15.0 7.0 218 18-285 5-238 (283)
265 PRK08508 biotin synthase; Prov 41.8 23 0.00058 15.0 5.6 135 24-196 50-188 (279)
266 TIGR01135 glmS glucosamine--fr 41.6 23 0.00058 15.0 3.5 32 374-405 355-392 (628)
267 PRK00748 1-(5-phosphoribosyl)- 41.6 23 0.00058 15.0 9.9 35 175-210 84-120 (241)
268 TIGR00303 TIGR00303 conserved 41.5 13 0.00034 16.8 1.3 74 186-281 168-249 (350)
269 PRK00023 cmk cytidylate kinase 41.5 23 0.00058 15.0 3.3 39 8-51 4-43 (225)
270 pfam01116 F_bP_aldolase Fructo 41.3 23 0.00059 15.0 7.0 142 114-285 88-240 (283)
271 PRK12339 2-phosphoglycerate ki 41.3 23 0.00059 15.0 3.5 28 256-283 161-188 (197)
272 pfam01079 Hint Hint module. Th 41.0 23 0.00059 14.9 4.7 44 84-127 68-115 (214)
273 PRK07204 3-oxoacyl-(acyl carri 40.9 23 0.00059 14.9 4.2 35 420-454 280-315 (329)
274 COG1844 Uncharacterized protei 40.9 23 0.0006 14.9 3.5 69 355-423 40-110 (125)
275 cd04795 SIS SIS domain. SIS (S 40.8 23 0.0006 14.9 2.5 30 371-401 47-81 (87)
276 pfam01513 NAD_kinase ATP-NAD k 40.8 23 0.0006 14.9 3.4 50 368-423 144-197 (243)
277 TIGR03600 phage_DnaB phage rep 40.6 24 0.0006 14.9 3.4 49 223-276 178-229 (421)
278 PRK07683 aminotransferase A; V 40.6 24 0.0006 14.9 4.4 33 432-472 332-364 (387)
279 PRK07369 dihydroorotase; Provi 40.4 24 0.00061 14.9 19.7 217 123-401 23-259 (419)
280 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.3 23 0.00059 14.9 2.4 34 371-405 46-84 (126)
281 PRK01686 hisG ATP phosphoribos 40.2 15 0.00037 16.4 1.3 27 360-386 139-166 (212)
282 PRK10886 DnaA initiator-associ 40.1 24 0.00061 14.8 8.4 98 353-456 21-145 (196)
283 PRK00561 ppnK inorganic polyph 39.9 24 0.00061 14.8 3.5 37 368-404 133-173 (259)
284 cd05017 SIS_PGI_PMI_1 The memb 39.7 24 0.00062 14.8 6.8 60 373-433 45-108 (119)
285 PRK12738 kbaY tagatose-bisphos 39.3 25 0.00063 14.8 7.0 219 19-284 6-240 (286)
286 PRK09490 metH B12-dependent me 39.1 25 0.00063 14.7 8.1 51 25-75 393-444 (1229)
287 PRK07094 biotin synthase; Prov 38.9 25 0.00063 14.7 5.9 21 38-58 10-30 (323)
288 PRK02649 ppnK inorganic polyph 38.8 25 0.00064 14.7 3.3 36 368-403 177-216 (305)
289 COG1243 ELP3 Histone acetyltra 38.5 25 0.00064 14.7 2.9 51 402-456 438-493 (515)
290 PRK13150 cytochrome c-type bio 38.4 25 0.00065 14.7 4.6 52 71-125 56-110 (159)
291 PRK12458 glutathione synthetas 38.4 25 0.00065 14.7 5.0 15 306-320 283-297 (349)
292 PRK13585 1-(5-phosphoribosyl)- 38.3 25 0.00065 14.7 9.7 127 174-322 85-232 (240)
293 PRK09440 avtA valine--pyruvate 38.3 25 0.00065 14.7 4.6 25 450-474 364-394 (416)
294 TIGR01011 rpsB_bact ribosomal 38.2 21 0.00052 15.3 1.8 122 145-304 93-224 (227)
295 cd04449 DEP_DEPDC5-like DEP (D 37.9 26 0.00066 14.6 3.2 35 270-304 26-62 (83)
296 COG2730 BglC Endoglucanase [Ca 37.8 26 0.00066 14.6 6.0 62 12-75 64-141 (407)
297 cd00564 TMP_TenI Thiamine mono 37.7 26 0.00066 14.6 7.0 45 19-63 14-58 (196)
298 pfam00899 ThiF ThiF family. Th 37.5 26 0.00067 14.6 3.9 42 226-277 82-123 (134)
299 cd00947 TBP_aldolase_IIB Tagat 37.5 26 0.00067 14.6 7.0 89 170-285 146-235 (276)
300 TIGR02865 spore_II_E stage II 37.4 26 0.00067 14.6 3.8 102 171-282 663-773 (794)
301 KOG2733 consensus 37.4 26 0.00067 14.6 4.5 18 429-446 373-390 (423)
302 COG1908 FrhD Coenzyme F420-red 37.0 27 0.00068 14.5 2.6 29 7-35 30-58 (132)
303 COG2145 ThiM Hydroxyethylthiaz 36.9 27 0.00068 14.5 4.5 46 225-275 45-90 (265)
304 TIGR00057 TIGR00057 Sua5/YciO/ 36.8 27 0.00068 14.5 3.7 70 235-313 106-177 (215)
305 PRK12737 gatY tagatose-bisphos 36.6 27 0.00069 14.5 6.9 140 114-284 90-240 (284)
306 PRK08006 replicative DNA helic 36.6 27 0.00069 14.5 3.6 51 218-275 205-258 (471)
307 TIGR02751 PEPCase_arch phospho 36.6 27 0.00069 14.5 3.8 196 106-336 63-315 (549)
308 PRK06840 hypothetical protein; 36.4 27 0.00069 14.5 6.8 34 421-454 287-321 (337)
309 TIGR01079 rplX_bact ribosomal 36.4 27 0.00069 14.4 2.6 21 149-169 57-77 (109)
310 cd06451 AGAT_like Alanine-glyo 36.3 27 0.00069 14.4 7.0 152 10-217 2-158 (356)
311 CHL00198 accA acetyl-CoA carbo 36.3 27 0.0007 14.4 5.0 13 410-422 218-230 (322)
312 PRK13583 hisG ATP phosphoribos 36.1 18 0.00045 15.8 1.2 27 360-386 159-186 (226)
313 pfam01791 DeoC DeoC/LacD famil 36.0 27 0.0007 14.4 14.1 41 294-335 77-120 (231)
314 PRK05692 hydroxymethylglutaryl 35.9 28 0.0007 14.4 15.9 200 155-375 12-228 (287)
315 TIGR01736 FGAM_synth_II phosph 35.8 4.9 0.00012 20.0 -1.7 149 260-410 528-710 (763)
316 LOAD_sis consensus 35.7 28 0.00071 14.4 2.4 33 372-404 51-87 (90)
317 cd06325 PBP1_ABC_uncharacteriz 35.7 28 0.00071 14.4 5.7 123 143-277 85-218 (281)
318 PRK13813 orotidine 5'-phosphat 35.6 28 0.00071 14.4 9.8 82 177-262 130-212 (215)
319 TIGR02403 trehalose_treC alpha 35.6 28 0.00071 14.4 3.5 38 28-71 56-96 (555)
320 PRK10892 D-arabinose 5-phospha 35.5 28 0.00071 14.3 3.2 49 395-443 245-300 (326)
321 CHL00141 rpl24 ribosomal prote 35.4 24 0.00061 14.9 1.8 77 81-169 6-82 (90)
322 TIGR00010 TIGR00010 hydrolase, 35.3 28 0.00072 14.3 9.4 122 174-310 18-164 (269)
323 PRK08694 consensus 35.1 28 0.00072 14.3 3.1 48 223-275 202-252 (468)
324 PRK06582 coproporphyrinogen II 34.9 29 0.00073 14.3 5.9 57 398-454 312-375 (390)
325 PRK08185 hypothetical protein; 34.7 29 0.00073 14.3 7.1 141 114-284 84-236 (283)
326 PRK06801 hypothetical protein; 34.6 29 0.00074 14.2 7.1 218 18-284 5-241 (286)
327 COG2108 Uncharacterized conser 34.6 29 0.00074 14.2 4.4 28 234-267 159-186 (353)
328 pfam03100 CcmE CcmE. CcmE is t 34.2 29 0.00075 14.2 4.2 54 70-126 48-103 (130)
329 pfam04392 ABC_sub_bind ABC tra 34.2 29 0.00075 14.2 5.8 110 156-277 102-217 (292)
330 PRK05878 pyruvate phosphate di 34.0 16 0.0004 16.2 0.7 120 233-380 396-516 (529)
331 PRK05886 yajC preprotein trans 34.0 30 0.00075 14.2 3.4 45 112-157 33-77 (108)
332 PRK08610 fructose-bisphosphate 33.9 30 0.00075 14.2 6.9 219 18-285 5-242 (286)
333 PRK01712 carbon storage regula 33.9 30 0.00075 14.2 2.1 26 118-144 6-31 (64)
334 PRK12281 rplX 50S ribosomal pr 33.9 25 0.00064 14.7 1.7 70 84-165 4-73 (77)
335 COG2433 Uncharacterized conser 33.4 28 0.0007 14.4 1.9 65 6-79 79-144 (652)
336 PRK05764 aspartate aminotransf 33.2 30 0.00077 14.1 3.9 105 10-128 8-122 (389)
337 TIGR02881 spore_V_K stage V sp 33.2 29 0.00074 14.2 2.0 53 175-231 180-232 (261)
338 PRK08195 4-hydroxy-2-ketovaler 33.1 30 0.00078 14.1 16.0 146 169-333 20-185 (337)
339 pfam00195 Chal_sti_synt_N Chal 33.1 30 0.00078 14.1 3.0 65 372-454 124-190 (228)
340 TIGR03609 S_layer_CsaB polysac 32.7 31 0.00079 14.0 3.7 26 387-412 262-287 (298)
341 TIGR01136 cysKM cysteine synth 32.7 31 0.00079 14.0 10.4 116 346-463 32-181 (315)
342 TIGR01647 ATPase-IIIA_H plasma 32.7 6.2 0.00016 19.2 -1.5 37 415-452 479-515 (835)
343 CHL00203 fabH 3-oxoacyl-acyl-c 32.6 31 0.00079 14.0 3.6 34 421-454 277-311 (327)
344 PRK06806 fructose-bisphosphate 32.6 31 0.00079 14.0 7.1 218 18-284 5-238 (281)
345 PRK13254 cytochrome c-type bio 32.5 31 0.00079 14.0 4.5 54 70-126 49-104 (149)
346 PRK10116 universal stress prot 32.4 31 0.0008 14.0 4.7 42 359-400 90-137 (142)
347 TIGR00259 TIGR00259 conserved 32.3 31 0.0008 14.0 5.9 79 174-256 161-250 (261)
348 cd01122 GP4d_helicase GP4d_hel 32.3 31 0.0008 14.0 3.9 58 254-311 165-226 (271)
349 PRK05748 replicative DNA helic 32.1 32 0.0008 14.0 3.6 48 223-275 187-237 (448)
350 TIGR01935 NOT-MenG RraA family 32.1 32 0.0008 14.0 3.2 24 106-131 129-153 (155)
351 TIGR02404 trehalos_R_Bsub treh 32.0 18 0.00047 15.7 0.8 30 153-182 165-196 (236)
352 cd00755 YgdL_like Family of ac 31.7 32 0.00081 13.9 2.0 75 214-303 81-156 (231)
353 pfam03796 DnaB_C DnaB-like hel 31.7 32 0.00082 13.9 4.8 27 253-279 154-180 (186)
354 COG2945 Predicted hydrolase of 31.5 32 0.00082 13.9 4.2 14 25-38 55-68 (210)
355 TIGR03316 ygeW probable carbam 31.5 32 0.00082 13.9 4.4 92 226-322 236-351 (357)
356 COG2070 Dioxygenases related t 31.4 32 0.00082 13.9 8.5 117 174-310 91-212 (336)
357 pfam01188 MR_MLE Mandelate rac 31.3 32 0.00083 13.9 6.7 50 20-72 5-54 (98)
358 TIGR03425 urea_degr_2 urea car 31.2 33 0.00083 13.9 4.5 24 116-139 60-83 (233)
359 PRK05246 glutathione synthetas 30.9 33 0.00084 13.8 5.1 20 262-281 183-202 (316)
360 PRK10434 srlR DNA-bindng trans 30.9 33 0.00084 13.8 6.6 148 115-278 86-254 (256)
361 PRK13482 DNA integrity scannin 30.7 33 0.00085 13.8 3.4 36 162-198 89-124 (352)
362 PRK08813 threonine dehydratase 30.6 33 0.00085 13.8 7.4 42 352-396 281-327 (349)
363 pfam00697 PRAI N-(5'phosphorib 30.6 33 0.00085 13.8 9.2 45 188-233 146-190 (195)
364 COG0481 LepA Membrane GTPase L 30.5 33 0.00085 13.8 5.9 106 86-197 221-333 (603)
365 pfam00072 Response_reg Respons 30.5 33 0.00085 13.8 8.3 64 363-426 34-103 (111)
366 PRK06836 aspartate aminotransf 30.5 33 0.00085 13.8 5.4 21 450-473 354-374 (396)
367 PRK09195 gatY tagatose-bisphos 30.3 34 0.00086 13.8 7.0 219 19-284 6-240 (284)
368 TIGR03096 nitroso_cyanin nitro 30.3 34 0.00086 13.8 6.0 94 60-165 25-131 (135)
369 pfam08303 tRNA_lig_kinase tRNA 30.3 8.1 0.00021 18.3 -1.3 25 186-211 90-114 (169)
370 COG0794 GutQ Predicted sugar p 30.1 34 0.00086 13.7 3.7 33 372-405 87-124 (202)
371 PRK08082 consensus 30.1 34 0.00086 13.7 3.1 76 223-303 187-282 (453)
372 PRK11302 DNA-binding transcrip 30.0 34 0.00087 13.7 4.8 34 369-403 173-211 (284)
373 PRK13113 consensus 30.0 34 0.00087 13.7 9.9 73 226-311 160-233 (263)
374 PRK12815 carB carbamoyl phosph 29.9 34 0.00087 13.7 6.4 24 53-76 508-532 (1068)
375 cd01890 LepA LepA subfamily. 29.9 34 0.00087 13.7 2.9 15 10-24 3-17 (179)
376 PRK07860 NADH dehydrogenase su 29.8 34 0.00087 13.7 9.0 64 228-306 382-447 (809)
377 TIGR01975 isoAsp_dipep beta-as 29.7 34 0.00087 13.7 2.5 50 14-64 73-124 (391)
378 PRK06321 replicative DNA helic 29.7 34 0.00088 13.7 3.3 49 223-276 210-261 (472)
379 cd06549 GH18_trifunctional GH1 29.4 35 0.00088 13.7 5.4 116 199-334 73-194 (298)
380 pfam01634 HisG ATP phosphoribo 29.3 26 0.00068 14.5 1.2 24 362-385 94-118 (161)
381 pfam02599 CsrA Global regulato 29.3 35 0.00089 13.6 2.1 26 118-144 6-31 (53)
382 PRK09352 3-oxoacyl-(acyl carri 29.2 35 0.00089 13.6 4.2 28 427-454 278-305 (319)
383 pfam00994 MoCF_biosynth Probab 29.2 35 0.00089 13.6 5.0 48 262-320 22-72 (140)
384 TIGR01367 pyrE_Therm orotate p 29.1 35 0.0009 13.6 2.9 23 401-423 71-94 (205)
385 pfam03325 Herpes_PAP Herpesvir 29.0 35 0.0009 13.6 5.1 90 26-119 21-116 (268)
386 PRK13140 consensus 29.0 35 0.0009 13.6 9.6 42 11-52 20-63 (257)
387 PRK00489 hisG ATP phosphoribos 28.8 22 0.00057 15.1 0.7 19 360-378 262-280 (287)
388 pfam10398 DUF2443 Protein of u 28.8 24 0.00062 14.8 0.9 40 234-273 29-76 (79)
389 TIGR01108 oadA oxaloacetate de 28.6 36 0.00091 13.6 5.3 42 20-65 94-136 (616)
390 COG0052 RpsB Ribosomal protein 28.4 36 0.00092 13.5 2.0 36 256-291 165-202 (252)
391 COG1737 RpiR Transcriptional r 28.3 36 0.00092 13.5 4.4 46 365-411 171-222 (281)
392 cd02940 DHPD_FMN Dihydropyrimi 28.3 36 0.00092 13.5 10.2 49 254-312 151-201 (299)
393 TIGR01963 PHB_DH 3-hydroxybuty 28.2 36 0.00093 13.5 2.3 39 251-292 184-222 (258)
394 TIGR00078 nadC nicotinate-nucl 28.1 37 0.00093 13.5 4.7 16 296-311 198-213 (276)
395 COG2515 Acd 1-aminocyclopropan 28.0 37 0.00093 13.5 5.9 92 302-401 114-214 (323)
396 TIGR01834 PHA_synth_III_E poly 27.9 37 0.00094 13.5 1.8 74 219-303 238-312 (332)
397 CHL00067 rps2 ribosomal protei 27.9 29 0.00074 14.2 1.2 33 260-292 170-204 (227)
398 PRK13112 consensus 27.9 37 0.00094 13.5 10.7 72 227-311 162-234 (279)
399 PRK13127 consensus 27.9 37 0.00094 13.5 10.5 36 18-53 26-61 (262)
400 PRK07682 hypothetical protein; 27.7 37 0.00094 13.5 4.7 31 434-472 327-357 (378)
401 KOG4533 consensus 27.5 15 0.00039 16.3 -0.3 23 239-261 90-112 (317)
402 cd05015 SIS_PGI_1 Phosphogluco 27.4 37 0.00095 13.4 4.0 54 369-422 71-137 (158)
403 PRK08207 coproporphyrinogen II 27.3 38 0.00096 13.4 5.4 147 292-444 212-407 (497)
404 COG0198 RplX Ribosomal protein 27.3 38 0.00096 13.4 1.9 21 147-167 51-71 (104)
405 pfam03152 UFD1 Ubiquitin fusio 27.3 38 0.00096 13.4 5.8 36 115-150 131-168 (176)
406 cd00831 CHS_like Chalcone and 27.1 38 0.00097 13.4 4.5 31 424-454 319-349 (361)
407 cd07230 Pat_TGL4-5_like Triacy 27.0 38 0.00097 13.4 2.2 18 46-63 57-74 (421)
408 PRK06816 3-oxoacyl-(acyl carri 27.0 38 0.00097 13.4 6.6 35 421-455 328-363 (378)
409 TIGR01763 MalateDH_bact malate 26.8 35 0.00089 13.7 1.5 91 54-149 19-122 (308)
410 cd02761 MopB_FmdB-FwdB The Mop 26.8 29 0.00075 14.2 1.1 75 227-310 123-200 (415)
411 PRK09165 replicative DNA helic 26.7 38 0.00098 13.3 7.4 47 223-274 189-252 (484)
412 PRK13116 consensus 26.7 38 0.00098 13.3 10.5 69 227-311 161-235 (278)
413 pfam09347 DUF1989 Domain of un 26.7 39 0.00098 13.3 4.4 23 117-139 58-80 (167)
414 PRK10494 hypothetical protein; 26.7 39 0.00098 13.3 5.5 50 364-413 143-197 (259)
415 TIGR00513 accA acetyl-CoA carb 26.5 39 0.00099 13.3 3.6 27 30-57 5-31 (329)
416 pfam10930 DUF2737 Protein of u 26.5 35 0.00088 13.7 1.4 25 271-295 7-31 (54)
417 PRK13117 consensus 26.5 39 0.00099 13.3 10.1 74 226-311 160-234 (268)
418 PRK13131 consensus 26.4 39 0.00099 13.3 10.3 74 226-311 153-227 (257)
419 PRK12311 rpsB 30S ribosomal pr 26.3 24 0.00061 14.8 0.6 55 259-313 171-235 (332)
420 PRK13114 consensus 26.3 39 0.001 13.3 10.3 70 226-311 156-229 (266)
421 PRK13584 hisG ATP phosphoribos 26.2 20 0.00051 15.5 0.1 26 361-386 133-159 (204)
422 PRK06096 molybdenum transport 26.2 39 0.001 13.3 7.4 74 234-331 155-230 (284)
423 pfam04437 RINT1_TIP1 RINT-1 / 26.1 26 0.00066 14.6 0.7 27 216-242 135-161 (485)
424 PRK00004 rplX 50S ribosomal pr 26.1 39 0.001 13.2 1.8 20 148-167 53-72 (102)
425 PRK13958 N-(5'-phosphoribosyl) 26.0 40 0.001 13.2 7.1 28 18-45 9-36 (207)
426 cd05013 SIS_RpiR RpiR-like pro 26.0 40 0.001 13.2 3.1 34 371-405 60-98 (139)
427 PRK07084 fructose-bisphosphate 25.9 40 0.001 13.2 6.8 227 19-284 12-276 (321)
428 cd03317 NAAAR N-acylamino acid 25.9 40 0.001 13.2 7.2 15 260-274 269-283 (354)
429 KOG1068 consensus 25.9 39 0.001 13.3 1.6 17 1-17 41-58 (245)
430 PRK09249 coproporphyrinogen II 25.8 40 0.001 13.2 5.1 58 396-453 359-425 (456)
431 pfam06371 Drf_GBD Diaphanous G 25.8 40 0.001 13.2 4.0 106 171-301 80-185 (187)
432 cd01318 DHOase_IIb Dihydroorot 25.7 40 0.001 13.2 2.6 17 288-304 224-240 (361)
433 cd00423 Pterin_binding Pterin 25.7 40 0.001 13.2 6.1 52 20-73 27-86 (258)
434 PRK08760 replicative DNA helic 25.7 40 0.001 13.2 3.1 59 222-285 212-279 (476)
435 PRK08526 threonine dehydratase 25.6 40 0.001 13.2 7.8 36 214-251 149-184 (403)
436 cd01988 Na_H_Antiporter_C The 25.6 40 0.001 13.2 5.0 41 359-400 82-131 (132)
437 PRK08898 coproporphyrinogen II 25.6 40 0.001 13.2 4.0 68 385-453 300-377 (393)
438 PRK13138 consensus 25.6 40 0.001 13.2 9.7 71 228-311 160-231 (264)
439 cd05845 Ig2_L1-CAM_like Second 25.6 40 0.001 13.2 5.0 67 83-151 11-82 (95)
440 TIGR01304 IMP_DH_rel_2 IMP deh 25.5 17 0.00042 16.0 -0.4 111 187-311 156-289 (376)
441 KOG2212 consensus 25.5 40 0.001 13.2 3.5 85 383-477 397-482 (504)
442 TIGR00004 TIGR00004 endoribonu 25.4 29 0.00074 14.2 0.9 16 222-237 51-66 (129)
443 pfam01380 SIS SIS domain. SIS 25.4 41 0.001 13.2 2.5 33 371-404 53-90 (131)
444 COG0126 Pgk 3-phosphoglycerate 25.2 41 0.001 13.1 3.4 301 19-394 41-362 (395)
445 PTZ00237 acetyl-CoA synthetase 25.2 41 0.001 13.1 3.3 14 441-454 491-504 (649)
446 PRK08840 replicative DNA helic 25.1 41 0.001 13.1 3.2 49 222-275 200-251 (464)
447 TIGR02140 permease_CysW sulfat 25.0 40 0.001 13.2 1.5 28 437-470 208-235 (275)
448 PRK08043 bifunctional acyl-[ac 25.0 41 0.0011 13.1 5.5 23 261-283 293-316 (719)
449 PRK12812 flgD flagellar basal 24.9 3.9 9.9E-05 20.7 -3.7 32 126-158 182-215 (259)
450 KOG0243 consensus 24.8 42 0.0011 13.1 2.2 18 296-315 419-436 (1041)
451 PRK05835 fructose-bisphosphate 24.7 42 0.0011 13.1 6.9 230 19-284 5-263 (307)
452 PRK11713 16S rRNA m3U1498 meth 24.7 42 0.0011 13.1 5.9 132 86-234 9-159 (243)
453 TIGR01810 betA choline dehydro 24.7 42 0.0011 13.1 3.0 21 146-166 342-362 (540)
454 pfam01871 AMMECR1 AMMECR1. Thi 24.6 42 0.0011 13.1 2.4 44 229-272 104-151 (172)
455 PRK11382 frlB fructoselysine-6 24.6 42 0.0011 13.1 2.8 21 396-416 313-333 (347)
456 PRK08674 bifunctional phosphog 24.5 42 0.0011 13.0 6.8 41 291-336 177-217 (328)
457 PRK08362 consensus 24.5 42 0.0011 13.0 4.6 22 450-472 345-366 (389)
458 PRK00507 deoxyribose-phosphate 24.4 42 0.0011 13.0 12.1 147 168-332 16-177 (221)
459 pfam08408 DNA_pol_B_3 DNA poly 24.4 42 0.0011 13.0 4.6 72 84-167 10-83 (149)
460 PRK00300 gmk guanylate kinase; 24.4 42 0.0011 13.0 3.7 43 2-44 2-45 (208)
461 TIGR02823 oxido_YhdH putative 24.3 42 0.0011 13.0 3.5 18 247-264 301-319 (330)
462 pfam06613 KorB_C KorB C-termin 24.3 42 0.0011 13.0 1.9 24 373-396 8-31 (60)
463 PRK00568 carbon storage regula 24.1 43 0.0011 13.0 2.1 27 118-145 6-32 (76)
464 TIGR02280 PaaB1 phenylacetate 23.9 43 0.0011 13.0 2.0 35 234-276 67-101 (259)
465 pfam07521 RMMBL RNA-metabolisi 23.9 43 0.0011 13.0 1.7 22 32-53 8-30 (43)
466 smart00729 Elp3 Elongator prot 23.7 44 0.0011 12.9 6.8 11 245-255 115-125 (216)
467 COG1862 YajC Preprotein transl 23.6 44 0.0011 12.9 3.2 34 112-146 38-71 (97)
468 TIGR01852 lipid_A_lpxA acyl-[a 23.6 44 0.0011 12.9 2.8 52 149-204 180-232 (257)
469 TIGR00705 SppA_67K signal pept 23.5 44 0.0011 12.9 2.3 53 13-72 53-108 (614)
470 pfam09954 DUF2188 Uncharacteri 23.5 39 0.00098 13.3 1.2 27 280-306 9-36 (131)
471 PRK07004 replicative DNA helic 23.5 44 0.0011 12.9 3.7 48 223-275 197-247 (460)
472 PRK05581 ribulose-phosphate 3- 23.5 44 0.0011 12.9 12.0 133 177-330 75-217 (220)
473 COG2258 Uncharacterized protei 23.5 44 0.0011 12.9 3.8 44 116-161 93-159 (210)
474 COG4464 CapC Capsular polysacc 23.2 44 0.0011 12.9 6.7 66 8-77 7-83 (254)
475 PRK07568 aspartate aminotransf 23.2 44 0.0011 12.9 4.5 39 433-473 334-374 (396)
476 TIGR01768 GGGP-family geranylg 23.2 44 0.0011 12.9 6.0 48 16-66 13-61 (242)
477 COG0040 HisG ATP phosphoribosy 23.0 30 0.00077 14.1 0.5 28 229-256 202-231 (290)
478 cd00710 LbH_gamma_CA Gamma car 23.0 45 0.0011 12.8 6.3 77 107-185 71-157 (167)
479 pfam02698 DUF218 DUF218 domain 23.0 45 0.0011 12.8 7.5 73 305-384 31-103 (148)
480 COG0332 FabH 3-oxoacyl-[acyl-c 22.9 45 0.0011 12.8 5.3 71 382-454 237-308 (323)
481 COG2236 Predicted phosphoribos 22.9 45 0.0011 12.8 6.6 71 370-440 28-112 (192)
482 CHL00200 trpA tryptophan synth 22.8 45 0.0012 12.8 10.1 34 19-52 31-64 (263)
483 PRK02615 thiamine-phosphate py 22.7 45 0.0012 12.8 7.4 22 254-275 183-204 (345)
484 cd01483 E1_enzyme_family Super 22.6 46 0.0012 12.8 4.5 41 227-277 81-121 (143)
485 pfam01274 Malate_synthase Mala 22.6 46 0.0012 12.8 14.0 119 184-311 199-363 (524)
486 pfam11205 DUF2987 Protein of u 22.5 46 0.0012 12.8 1.7 55 106-161 5-59 (148)
487 pfam04101 Glyco_tran_28_C Glyc 22.3 46 0.0012 12.8 6.4 109 195-335 36-146 (167)
488 smart00049 DEP Domain found in 22.3 46 0.0012 12.8 3.8 35 270-304 17-52 (77)
489 PRK06220 consensus 22.1 46 0.0012 12.7 4.5 34 432-473 329-362 (384)
490 PRK07476 threonine dehydratase 22.1 47 0.0012 12.7 9.4 41 363-403 161-206 (323)
491 TIGR02087 LEUD_arch 3-isopropy 21.8 38 0.00097 13.4 0.9 15 112-126 40-54 (159)
492 KOG0242 consensus 21.8 46 0.0012 12.8 1.3 16 71-86 154-169 (675)
493 TIGR03424 urea_degr_1 urea car 21.8 47 0.0012 12.7 4.6 23 117-139 62-84 (198)
494 cd07206 Pat_TGL3-4-5_SDP1 Tria 21.8 47 0.0012 12.7 2.2 26 303-328 67-92 (298)
495 pfam00290 Trp_syntA Tryptophan 21.8 47 0.0012 12.7 9.7 120 176-309 103-223 (258)
496 PRK10812 putative metallodepen 21.6 47 0.0012 12.7 8.9 100 173-275 19-129 (265)
497 TIGR00393 kpsF sugar isomerase 21.6 47 0.0012 12.7 2.9 32 373-404 49-84 (272)
498 PRK09248 putative hydrolase; V 21.6 47 0.0012 12.7 3.7 70 203-277 116-192 (246)
499 PRK07309 aromatic amino acid a 21.5 48 0.0012 12.6 4.4 31 29-60 359-389 (390)
500 COG4996 Predicted phosphatase 21.4 42 0.0011 13.0 1.0 31 116-146 112-142 (164)
No 1
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=100.00 E-value=0 Score=1235.44 Aligned_cols=467 Identities=37% Similarity=0.624 Sum_probs=445.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHH-----------------CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEE
Q ss_conf 752699941877579999999997-----------------399789998888898999999999999999749-92799
Q gi|254780442|r 5 RRIKIISTLGPSSFSEDVINRLHE-----------------EGTDVFRINMSHTSHDKMCELIKKIRAVELRSR-RPIGI 66 (480)
Q Consensus 5 rktKIi~TlGPas~~~e~i~~l~~-----------------aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~-~~i~I 66 (480)
|||||||||||||+++|.|++|++ |||||+||||||||+|+|..+|+++|+++++++ +||||
T Consensus 1 rrTKIv~TiGPat~~~e~l~~l~~D~YAA~k~AYAniEiikaGmnVaRlNFSHG~~E~h~~~i~~vR~~~~~~~~~~vaI 80 (513)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDDNYAAIKVAYANIEIIKAGMNVARLNFSHGSHEEHGKRIENVREASEKLGGRPVAI 80 (513)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99518997385348889999985074057787775455532088635542679898899999999999999719950899
Q ss_pred EEECCCCEEEEEECCC-CCEEECCCCEEEEECCC---CCCCCCCCCCCCCC---CHHHCCCCCEEEEECCCEEECCCCCC
Q ss_conf 9987898678865489-81896589999995324---55644422126644---22211336526740684221023445
Q gi|254780442|r 67 LIDLQGPKFRVGKFAN-SKVDLTEGQIFTLDNKD---SLGSSDRVMLPHPE---IFASIKIGDRLLIDDGRVKLCVQEKG 139 (480)
Q Consensus 67 l~Dl~GpkiR~g~~~~-~~i~l~~G~~v~l~~~~---~~~~~~~i~i~y~~---l~~~ik~Gd~I~idDG~i~l~V~~~~ 139 (480)
|+||||||||||++++ ++++|++|++|.|+++. ..++.+.++++|++ |++.+.+|+.||+|||.|.|+|.++.
T Consensus 81 ~lDtkGPeIR~g~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~~~~v~Y~~gYnl~~~v~~G~~iLvDDG~i~L~V~~~~ 160 (513)
T TIGR01064 81 LLDTKGPEIRTGEIKGDGEVKLKKGDKVILTTDVKYKGEGSEEKVSVDYKGGYNLVKDVVEGDKILVDDGKISLVVVSVE 160 (513)
T ss_pred EEECCCCEEEEEECCCCCCEEECCCCEEEEECCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEEEEEC
T ss_conf 97268877998741788756862788799825713420347786687167865565402688889876677999998862
Q ss_pred CCE-EEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC---CCE
Q ss_conf 411-2455138808711456446785445556765567789988734885325058557734799999862003---433
Q gi|254780442|r 140 IGF-IKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---KIG 215 (480)
Q Consensus 140 ~~~-i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~---~~~ 215 (480)
++. |.|+|++||.|++|||||+||..++||+|||||++||+||+++ ||||||+||||+++||+++|++|++. +++
T Consensus 161 ~~~~v~~~v~ngG~l~~~KGvNlPG~~~~LP~lsEKD~~Dl~Fg~~~-gvD~va~SFvR~~~DV~~~R~~L~~~G~~~~~ 239 (513)
T TIGR01064 161 GDKTVICEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFGVEQ-GVDFVAASFVRTAEDVEEVREVLEEKGGKDVK 239 (513)
T ss_pred CCCEEEEEEEECCEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 88568999996868717871555887201566798889999999872-97889972788875699999999970889864
Q ss_pred EEEEECCHHHHHH--HHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHH
Q ss_conf 5553278566311--78887533124752222002158767368999999998513983998057678888288984034
Q gi|254780442|r 216 LMSKIEKPRAIEY--ASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAE 293 (480)
Q Consensus 216 IiaKIE~~~al~n--l~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaE 293 (480)
||||||+++||+| ||||+++||||||||||||+|+|+|+||.+||.||++||++|||||+||||||||++||+|||||
T Consensus 240 IIaKIE~~~gv~N~a~deI~~aSDGiMVARGDLGvEip~eeVp~~QK~~I~~cn~~gk~VItATQMLdSMi~Np~PTRAE 319 (513)
T TIGR01064 240 IIAKIENQEGVDNDAIDEIAEASDGIMVARGDLGVEIPAEEVPILQKKLIRKCNRAGKPVITATQMLDSMIKNPRPTRAE 319 (513)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEECCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCE
T ss_conf 88763684335706799999872952897656702547247999999999999850992799833245500688894111
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 77899998519968998144435446589999999988763010124444443--20387888878999999998610--
Q gi|254780442|r 294 VSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSL--RRIEPNETGADVISSAARQIAET-- 369 (480)
Q Consensus 294 v~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~--~~~~~~~~~~~aIa~aav~lA~~-- 369 (480)
|+||||||+|||||||||||||.|+||+|+|++|++||.+||+...+...... .......+.+++|+.|+++++.+
T Consensus 320 VsDVANAiLDGtDAvMLSGETA~G~YP~eAV~~M~~Ia~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 399 (513)
T TIGR01064 320 VSDVANAILDGTDAVMLSGETAKGKYPVEAVQMMAKIAKEAEKALAYLTNFNDRKNSTLKPSTITEAIALSAVEAAEKLD 399 (513)
T ss_pred EEEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32235553067761310101134778089999999999999863333430213452034777607789899999998641
Q ss_pred -----CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEEC-----CCCCHHHHHHHHHHHHH
Q ss_conf -----47868999708837999998418888699992998999876665393799936-----87999999999999999
Q gi|254780442|r 370 -----LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTE-----DASDSDDMVNRACRIVV 439 (480)
Q Consensus 370 -----l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~-----~~~~~~~~i~~a~~~l~ 439 (480)
+++++||++|.||+||+++|||||.+||||+|++++|+|+|.|+|||+|++++ +.++.+.+++.++++++
T Consensus 400 ~L~ns~~~kaivv~T~~G~ta~~~S~~rp~~piia~T~~~~v~~~l~l~~GV~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
T TIGR01064 400 KLVNSLDAKAIVVPTESGRTARLLSKYRPSAPIIAVTPNERVARQLALYWGVFPFLVDKAKDEEFSDTDARVKQALELLK 479 (513)
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 22100155268981489847888975277983899708779984413000048898075146540148999999999998
Q ss_pred HCCCCCCCCEEEEEEE-ECCCCCCCCCEEEEEEE
Q ss_conf 8888778877999852-22788886415999994
Q gi|254780442|r 440 EQGFGKPGDRIIISAG-LPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 440 ~~g~i~~GD~VVvv~G-~p~~~~G~TN~irv~~V 472 (480)
++|+++.||.+|+++| .|.+..|+||++||++|
T Consensus 480 ~~g~~~~GD~~~~~~~g~~~~~~~~tN~~~v~~v 513 (513)
T TIGR01064 480 EKGIVKKGDLVVVIQGGAPIGGSGGTNTIRVHTV 513 (513)
T ss_pred HCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC
T ss_conf 6354004887999963754387654136888749
No 2
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1205.84 Aligned_cols=475 Identities=42% Similarity=0.680 Sum_probs=457.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 77526999418775799999999973997899988888989999999999999997499279999878986788654898
Q gi|254780442|r 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANS 83 (480)
Q Consensus 4 mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~ 83 (480)
||||||||||||||++++.|++|+++|||+||||||||++|+|++++++||+++++.+++++||+||||||||+|.|+++
T Consensus 7 mRrTKIV~TiGPas~s~e~l~~Li~aGmnV~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~G~~~~~ 86 (589)
T PRK06354 7 MRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKELGKTVGILQDLQGPKIRLGRFEDG 86 (589)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 46661899558887999999999986999999988989999999999999999998099817999788980388752798
Q ss_pred CEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCC--CCCEEEEEECCCCEEECCCCCCC
Q ss_conf 1896589999995324556444221266442221133652674068422102344--54112455138808711456446
Q gi|254780442|r 84 KVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEK--GIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 84 ~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~--~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
+++|++||+|+|+.++..|+.+.++++|++|++++++||.|++|||.+.|+|.++ +++.+.|+|++||.|+++||+|+
T Consensus 87 ~i~L~~G~~~~lt~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~~~i~c~V~~gG~L~~~KGVNl 166 (589)
T PRK06354 87 PIELKTGDPFILTSREVLGTQEKFSVTYDGLADEVPEGSRILLDDGLVEMEVEEVDKAAGELHCKVLVGGVLSNNKGVNF 166 (589)
T ss_pred CEEECCCCEEEEECCCCCCCCCEEECCHHHHHHHCCCCCEEEECCCEEEEEEEEEECCCCEEEEEEEECCEECCCCCCCC
T ss_conf 28964799999965886897787853668989766899889954880899999996789989999987939718982417
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHHEE
Q ss_conf 785445556765567789988734885325058557734799999862003--433555327856631178887533124
Q gi|254780442|r 162 PDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSDAV 239 (480)
Q Consensus 162 p~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~sDgi 239 (480)
||..+++|+|||||++||+||+++ ++||||+||||+++||.++|+++.+. +++||||||+++|++|||||+++||||
T Consensus 167 Pg~~l~lp~lTeKD~~dl~f~~~~-~vD~VAlSFVrsa~DV~~ir~~l~~~g~~~~IIAKIE~~eav~NldeIi~~sDgI 245 (589)
T PRK06354 167 PGVSLSLPALTEKDREDLIFGLEQ-GVDWIALSFVRNPSDVLEIKELIEHNGKSIPVIAKIEKQEAIDNIDAILELCDGV 245 (589)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEE
T ss_conf 998778778982028999999974-9998998278998999999999986698634999745799998699998747699
Q ss_pred EEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 75222200215876736899999999851398399805767888828898403477899998519968998144435446
Q gi|254780442|r 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSY 319 (480)
Q Consensus 240 miaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~y 319 (480)
||||||||+|+|+|+||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+|
T Consensus 246 MVARGDLGvEip~e~VP~~QK~II~~c~~~gKPVI~ATQMLeSMi~np~PTRAEvsDVANAV~DGtDAVMLSgETA~G~y 325 (589)
T PRK06354 246 MVARGDLGVEIPAEEVPLLQKRLIKKANSLGIPVITATQMLDSMQRNPRPTRAEVSDVANAILDGTDAVMLSNETAVGDY 325 (589)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99548632025888847999999999997399789981557875379998715467798999707878997462247867
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEE
Q ss_conf 58999999998876301012444444320387888878999999998610478689997088379999984188886999
Q gi|254780442|r 320 PVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIA 399 (480)
Q Consensus 320 P~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIia 399 (480)
|+|+|++|++||+++|+...+...... ......+..++|+.||+++|++++|++|++||+||+||+++|||||++||+|
T Consensus 326 PveaV~~M~~I~~~~E~~~~~~~~~~~-~~~~~~~i~~aIa~aa~~~A~~l~a~aIv~~T~SG~TAr~vSk~RP~~pIiA 404 (589)
T PRK06354 326 PVEAVQTMATIAVRIERDLPYKDIFSK-RPEFTTTITNAISQAVSHIARQLDAAAIVTLTKSGATARNVSKFRPKTPILA 404 (589)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHH-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEE
T ss_conf 899999999999998617010010121-2566898789999999999986699899998898189999995498998999
Q ss_pred EECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECHHHCCC
Q ss_conf 92998999876665393799936879999999999999998888778877999852227888864159999945041157
Q gi|254780442|r 400 LSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLSG 479 (480)
Q Consensus 400 iT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~Vg~~~~~g 479 (480)
+||+++++|||+|+|||+|++++...+++++++.|.+.+++.|++++||.||+|+|.|+|.+|+||++|||.||+.+.+|
T Consensus 405 ~T~~~~v~R~L~L~wGV~P~~~~~~~~~d~~~~~a~~~a~~~g~~~~GD~vVitaG~p~g~~GtTN~lkv~~vg~~l~~G 484 (589)
T PRK06354 405 VTPNESVARRLQLVWGVTPLLVLDLPSTDETFQAAINVAQESGLLKEGDLVVITAGTLVGESGSTDLIKVHVVGAVVAKG 484 (589)
T ss_pred ECCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCCCEEEEEEEEHEEECC
T ss_conf 89988999850521474899827879999999999999997599999898999885108996334229999930220435
Q ss_pred C
Q ss_conf 9
Q gi|254780442|r 480 M 480 (480)
Q Consensus 480 ~ 480 (480)
.
T Consensus 485 ~ 485 (589)
T PRK06354 485 Q 485 (589)
T ss_pred C
T ss_conf 2
No 3
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1193.97 Aligned_cols=477 Identities=60% Similarity=0.936 Sum_probs=464.3
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEC
Q ss_conf 97777526999418775799999999973997899988888989999999999999997499279999878986788654
Q gi|254780442|r 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKF 80 (480)
Q Consensus 1 ~~~mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~ 80 (480)
|.+-|||||||||||||++++.|++|+++|||+||||||||++|||+++++++|+++++.+++|+||+||||||||||.|
T Consensus 1 ~~~~RrTKII~TiGPas~~~e~l~~li~aG~~v~RiN~SHg~~e~~~~~i~~iR~~~~~~~~~i~Il~Dl~GpkIR~g~~ 80 (477)
T PRK06247 1 MRRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDELGRPIGILADLQGPKLRLGRF 80 (477)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEC
T ss_conf 99888847999568997999999999987999999988989999999999999999997199707999788983688853
Q ss_pred CCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCC
Q ss_conf 89818965899999953245564442212664422211336526740684221023445411245513880871145644
Q gi|254780442|r 81 ANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGIS 160 (480)
Q Consensus 81 ~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn 160 (480)
.+++++|++||+|+|+.++..++.+.++++|++|++.+++||.|++|||.+.|+|++++++.+.|+|++||.|+++||+|
T Consensus 81 ~~~~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~gG~L~s~Kgvn 160 (477)
T PRK06247 81 ADGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEILAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVS 160 (477)
T ss_pred CCCCEEECCCCEEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCCEEEEEEECCCCEEEEEEEECCEECCCCCCC
T ss_conf 79858964899999966777897666774357779756899889992795599999716986999996285973887120
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEE
Q ss_conf 67854455567655677899887348853250585577347999998620034335553278566311788875331247
Q gi|254780442|r 161 FPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 (480)
Q Consensus 161 ip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgim 240 (480)
+||..+++|+|||||++||+||+++ ++||||+||||+++||+++|++++ ++++||||||+++|++|||||+++|||||
T Consensus 161 lP~~~l~lp~lTekD~~di~~a~~~-~vD~ialSFVrsa~DV~~vr~~l~-~~~~IIaKIE~~~av~NldeIi~~sDgIM 238 (477)
T PRK06247 161 LPGTVLPVSALTEKDRADLEFALEL-GVDWVALSFVQRPEDVEEVRKVIG-GRVPVMAKIEKPQAVDRLEAIVEASDAIM 238 (477)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHHHHHHHCEEE
T ss_conf 4687557557897799999989975-999999757698789999998658-76508999638878774899998617789
Q ss_pred EECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCH
Q ss_conf 52222002158767368999999998513983998057678888288984034778999985199689981444354465
Q gi|254780442|r 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYP 320 (480)
Q Consensus 241 iaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP 320 (480)
|||||||+|+|+|+||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||
T Consensus 239 VARGDLgvEi~~e~vp~~Qk~ii~~~~~~gKpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~DavmLs~ETA~G~yP 318 (477)
T PRK06247 239 VARGDLGVEVPLESVPLIQKRIIRMAREAGKPVVVATQMLESMIESPVPTRAEVSDVATAVLEGADAVMLSAETASGKYP 318 (477)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHCCCCCH
T ss_conf 96586545579889799999999999862996999715088743799986587878999998378789986100489778
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 89999999988763010124444443203878888789999999986104786899970883799999841888869999
Q gi|254780442|r 321 VDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIAL 400 (480)
Q Consensus 321 ~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiai 400 (480)
+++|++|++||++||++..+.......+..+..+.++++|.+|+++|++++|++||+||+||+||+++|+|||+|||+|+
T Consensus 319 v~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~a~~Iv~~T~sG~ta~~is~~Rp~~pI~a~ 398 (477)
T PRK06247 319 VEAVRTMARIIRQVERDPPYTHVPRAQRPQPEATGADAISYAARDIAETLDLAALVAYTSSGDTALRAARERPPLPILAL 398 (477)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999999998638413444430268877899999999999998656898899985895799999954989988998
Q ss_pred ECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECHHHCCC
Q ss_conf 2998999876665393799936879999999999999998888778877999852227888864159999945041157
Q gi|254780442|r 401 SPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLSG 479 (480)
Q Consensus 401 T~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~Vg~~~~~g 479 (480)
|++++++|||+|+|||+|+++++..+.+++++.+.++++++|++++||.||+|+|+|+|..|+||++||++||+|++.|
T Consensus 399 t~~~~~~r~l~l~~GV~p~~~~~~~~~d~~i~~a~~~l~~~g~v~~GD~VVitaG~P~g~~G~TN~irI~~Vg~~~~~~ 477 (477)
T PRK06247 399 TPNLETARRLALTWGVHCVVVEDARDTDDMVRRADEIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLRIAYIGEDDVSG 477 (477)
T ss_pred CCCHHHHHHHHECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 8988999875661580899808889999999999999997799899698999745018989877089999988767788
No 4
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1168.63 Aligned_cols=470 Identities=31% Similarity=0.499 Sum_probs=446.7
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCEEEEEECC
Q ss_conf 7775269994187757999999999739978999888889899999999999999974-992799998789867886548
Q gi|254780442|r 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS-RRPIGILIDLQGPKFRVGKFA 81 (480)
Q Consensus 3 ~mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~-~~~i~Il~Dl~GpkiR~g~~~ 81 (480)
..|||||||||||||+++|+|++|+++||||||||||||++|+|.++++++|++.++. +++|+||+||||||||+|.++
T Consensus 36 ~~RrTKIIaTiGPas~~~e~L~~li~aG~nv~RlNfSHg~~e~h~~~i~~iR~a~~~~~~~~v~Il~Dl~GPkIR~G~l~ 115 (513)
T PTZ00066 36 RSKKTHIVCTMGPACKNVETLVQLIDAGMNICRFNFSHGDHESHKKTLNNVREAQKSRPNANIGLMLDTKGPEIRTGFLK 115 (513)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECC
T ss_conf 78886389722799799999999998699999998899999999999999999998659996699998889825888748
Q ss_pred CC-CEEECCCCEEEEECCC-CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCC
Q ss_conf 98-1896589999995324-556444221266442221133652674068422102344541124551388087114564
Q gi|254780442|r 82 NS-KVDLTEGQIFTLDNKD-SLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGI 159 (480)
Q Consensus 82 ~~-~i~l~~G~~v~l~~~~-~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgv 159 (480)
++ +++|++||+++|+.+. ..++++.|+++|++|++.+++||.|++|||+++|+|++++++.+.|+|++||.|+++|||
T Consensus 116 ~~~~i~l~~G~~v~i~~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~v~~~V~~gG~L~s~KgV 195 (513)
T PTZ00066 116 NHKPITLKEGSTLKITTDYTILGDETCISCSYKKLPQSVKVGNIILIADGSLSCEVLEVHDDHIVVKVLNSATIGERKNM 195 (513)
T ss_pred CCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCCHHHCCCCCEEEEECCEEEEEEEEECCCEEEEEEEECCEEECCCCE
T ss_conf 99647853899999974886579878797258657756788988999799799999982297799999748397478643
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 46785445556765567789-988734885325058557734799999862003--433555327856631178887533
Q gi|254780442|r 160 SFPDTFLTTQALTQKDREDL-HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 160 nip~~~i~l~~ltekD~~di-~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~s 236 (480)
|+||..+++|+||+||++|| +||+++ ++||||+||||+++||.++|++|+++ +++||||||+++|++|||||+++|
T Consensus 196 nlP~~~l~lp~lTekD~~dil~fa~~~-~vD~IalSFVrs~~DV~~~r~~l~~~g~~~~IIaKIE~~~av~NldeIi~~s 274 (513)
T PTZ00066 196 NLPGVKVELPVIGEKDKNDILNFAIPM-NCDFIALSFIQSADDVRLCRNLLGERGKHIKIIPKIENIEGLINFDKILAES 274 (513)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHHC
T ss_conf 358986675547636889999999875-9999998677998999999999997598645899843765565899999858
Q ss_pred HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 12475222200215876736899999999851398399805767888828898403477899998519968998144435
Q gi|254780442|r 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETAS 316 (480)
Q Consensus 237 DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~ 316 (480)
|||||||||||+|+|+|+||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||+
T Consensus 275 DgIMVARGDLgvEip~e~vp~~QK~II~~c~~~gKPVIvATqmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~ 354 (513)
T PTZ00066 275 DGIMVARGDLGMEIPPEKVFLAQKLMISKCNLQGKPIITATQMLESMIKNPRPTRAESTDVANAVLDGSDCVMLSGETAG 354 (513)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 98999568542426988868999999999997599699974257774049998716677899999846777887352247
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC
Q ss_conf 44658999999998876301012444444--3203878888789999999986104786899970883799999841888
Q gi|254780442|r 317 GSYPVDAVRTMSLVASSAERDSSWLEMRS--LRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK 394 (480)
Q Consensus 317 G~yP~~~v~~~~~i~~~~E~~~~~~~~~~--~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~ 394 (480)
|+||+++|++|++||++||+..++..... ......+.+..+++|.+|+++|++++|++|++||+||+||+++|+|||+
T Consensus 355 GkyPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~~av~~A~~~~akaIv~~T~sG~ta~~iS~~RP~ 434 (513)
T PTZ00066 355 GKFPVEAVTIMSKLCFEAEACIDYRLLYQSLVLAISTPVSVQEAIARSAVELAEDIEAKLIIALTETGYTARLISKYRPS 434 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf 77989999999999999870410666776654226888987999999999999737998999987997899999965989
Q ss_pred CCEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 8699992998999876665393799936879999999999999998888778877999852227888864159999945
Q gi|254780442|r 395 LEIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473 (480)
Q Consensus 395 ~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~Vg 473 (480)
|||||+|++++++|||+|+|||+|+++++.++.+++++.++++++++|++++||.||+|+|+|+|.+|+||++||++|+
T Consensus 435 ~pI~a~T~~~~~~r~L~l~~GV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~VVv~~G~P~g~~G~TN~irV~~Vp 513 (513)
T PTZ00066 435 CTILALSASPHVVKCLSIHRGVTCIKVGSLQGTDVVVRNAIAIAKERNMVKVGDSAIVVHGVKEEVSGSTNLMKVVKIP 513 (513)
T ss_pred CCEEEECCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 9999989988998654241877899768879999999999999998699899798999745139988644179999679
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1161.08 Aligned_cols=465 Identities=31% Similarity=0.504 Sum_probs=444.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-
Q ss_conf 7752699941877579999999997399789998888898999999999999999749927999987898678865489-
Q gi|254780442|r 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN- 82 (480)
Q Consensus 4 mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~- 82 (480)
||||||||||||||+++++|++|+++|||+||||||||+++||+++++++|+++++.+++++||+||||||||||++.+
T Consensus 1 mrktKII~TiGPas~~~e~L~~li~aG~~v~RiN~SHg~~e~h~~~i~~iR~~~~~~~~~v~Il~Dl~GPkIR~g~l~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCC
T ss_conf 98875999358887999999999986998999979999999999999999999997399827999788980489853799
Q ss_pred CCEEECCCCEEEEECCC-CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCC
Q ss_conf 81896589999995324-55644422126644222113365267406842210234454112455138808711456446
Q gi|254780442|r 83 SKVDLTEGQIFTLDNKD-SLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 83 ~~i~l~~G~~v~l~~~~-~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
.+++|++|++++|+.++ ..++++.++++||+|++.+++||.|++|||.+.|+|++++++.+.|+|++||.|+++||+|+
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~v~~~~i~~~V~~gG~L~s~Kgvnl 160 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNNEIVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVNL 160 (470)
T ss_pred CEEEECCCCEEEEECCCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEEEECCEEEEEEEECCEECCCCCCCC
T ss_conf 73586289889995687647877789746356585578899899848968999999709979999974838548864233
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHHE
Q ss_conf 785445556765567789988734885325058557734799999862003---43355532785663117888753312
Q gi|254780442|r 162 PDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLSDA 238 (480)
Q Consensus 162 p~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~---~~~IiaKIE~~~al~nl~eI~~~sDg 238 (480)
||..+++|+||+||++||+||+++ ++||||+||||+++||.++|+++.+. +++||||||+++|++|||||+++|||
T Consensus 161 P~~~~~lp~ltekD~~di~f~~~~-~vD~IalSFVrsa~DV~~lr~~l~~~~~~~~~IIAKIE~~~av~NldeIi~~sDg 239 (470)
T PRK09206 161 PGVSIALPALAEKDKQDLIFGCEQ-GVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCE
T ss_conf 444578678898899999999985-9999998587987889999999997269973499984688888739999986779
Q ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 47522220021587673689999999985139839980576788882889840347789999851996899814443544
Q gi|254780442|r 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGS 318 (480)
Q Consensus 239 imiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~ 318 (480)
|||||||||+|+|+|+||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+
T Consensus 240 IMIARGDLgvei~~e~vp~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTRAEvsDVaNAV~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99935865331688885899999999999739988999377787448999865768789999984767899746324777
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEE
Q ss_conf 65899999999887630101244444432038788887899999999861047868999708837999998418888699
Q gi|254780442|r 319 YPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEII 398 (480)
Q Consensus 319 yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIi 398 (480)
||+++|++|++||++||+..... .......+..+..+++|.+|+++|++++|++|++||+||+||+++|+|||+|||+
T Consensus 320 yPv~~V~~m~~I~~~aE~~~~~~--~~~~~~~~~~~~~~aia~~a~~~a~~~~a~aIv~~T~sG~ta~~is~~RP~~pI~ 397 (470)
T PRK09206 320 YPLEAVTIMATICERTDRVMNSR--LESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATIL 397 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCEE
T ss_conf 87999999999999998777653--1001357778889999999999998659989999858738999997039999889
Q ss_pred EEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 99299899987666539379993687999999999999999888877887799985222788886415999994
Q gi|254780442|r 399 ALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 399 aiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~V 472 (480)
|+|++++++|||+|+|||+|+++++..+.+++++.+.++++++|++++||.||+|+|+|.+ +|+||++|||.|
T Consensus 398 a~t~~~~~~r~l~l~~Gv~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~GD~vVv~~G~~~~-~G~TN~~~v~~v 470 (470)
T PRK09206 398 ALTTNEKTAHQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVP-SGTTNTASVHVL 470 (470)
T ss_pred EECCCHHHHHHHHECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCCCEEEEEEEC
T ss_conf 9889889999756525838999278899999999999999986998998989997777789-987747999979
No 6
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=0 Score=1148.60 Aligned_cols=467 Identities=36% Similarity=0.568 Sum_probs=442.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 77526999418775799999999973997899988888989999999999999997499279999878986788654898
Q gi|254780442|r 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANS 83 (480)
Q Consensus 4 mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~ 83 (480)
||||||||||||||++++.|++|+++|||+||||||||+++||+++++++|+++++.+++|+||+||||||||||.++++
T Consensus 1 mrrTKIi~TiGPas~~~~~l~~li~aG~~v~RiN~SHg~~e~~~~~i~~iR~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 98876998447897999999999987999999989999999999999999999997199807999788983589854899
Q ss_pred -CEEECCCCEEEEECCC--CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCC-EEEEEECCCCEEECCCCC
Q ss_conf -1896589999995324--556444221266442221133652674068422102344541-124551388087114564
Q gi|254780442|r 84 -KVDLTEGQIFTLDNKD--SLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIG-FIKCKVIAGISIADRKGI 159 (480)
Q Consensus 84 -~i~l~~G~~v~l~~~~--~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~-~i~c~V~~gG~l~s~Kgv 159 (480)
+++|++|+++.|+.++ ..++++.++++|++|++.+++||.|++|||.+.|+|+++.++ .+.|+|++||.|+++||+
T Consensus 81 ~~i~l~~G~~v~l~~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~~i~~~v~~gG~l~s~Kgv 160 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGV 160 (480)
T ss_pred CEEEECCCCEEEEEECCCCCCCCCCEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCEEEEEEEECCEECCCCCC
T ss_conf 63795489999998568767898888965728889765899889994783899999985897699999758397388632
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 46785445556765567789988734885325058557734799999862003--4335553278566311788875331
Q gi|254780442|r 160 SFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237 (480)
Q Consensus 160 nip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~sD 237 (480)
|+||..+++|+||+||++||+||+++ ++||||+||||+++||.++|+++++. +++||||||+++|++||+||+++||
T Consensus 161 n~p~~~~~lp~lTekD~~di~~a~~~-~vD~valSFVr~~~Dv~~lr~~l~~~g~~~~IiaKIE~~~al~nl~eIi~~sD 239 (480)
T cd00288 161 NLPGTDVDLPALSEKDKADLRFGVEQ-GVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHHCC
T ss_conf 36888678667987789999868875-99999988889899999999999974886669998527766647999998538
Q ss_pred EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 24752222002158767368999999998513983998057678888288984034778999985199689981444354
Q gi|254780442|r 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASG 317 (480)
Q Consensus 238 gimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G 317 (480)
||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|
T Consensus 240 gIMIARGDLgvEi~~e~vp~~Qk~Ii~~c~~~gKPvIvATqmLeSMi~~p~PTRAEv~DVanAv~dG~DavMLs~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEHHHHHHHHHHCCCEEEECHHHCCC
T ss_conf 89997786556479889899999999999983995999673688762389985210245888987458679975322278
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHH--HHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 465899999999887630101244444--432038788887899999999861047868999708837999998418888
Q gi|254780442|r 318 SYPVDAVRTMSLVASSAERDSSWLEMR--SLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKL 395 (480)
Q Consensus 318 ~yP~~~v~~~~~i~~~~E~~~~~~~~~--~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~ 395 (480)
+||++||++|++||++||+..++...+ .........++.+++|.+|+++|++++|++|++||+||+||+++|||||++
T Consensus 320 ~yPv~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~a~aIv~~T~sG~tA~~is~~RP~~ 399 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNA 399 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC
T ss_conf 79899999999999999735204544445431257899989999999999998469989999879858999999659799
Q ss_pred CEEEEECCHHHHHHHHHHCCCEEEEECC-----CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 6999929989998766653937999368-----79999999999999998888778877999852227888864159999
Q gi|254780442|r 396 EIIALSPMIQTARRLALVWGIHCVVTED-----ASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIA 470 (480)
Q Consensus 396 pIiaiT~~~~t~r~l~L~~GV~p~~~~~-----~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~ 470 (480)
||||+|++++++|||+|+|||+|+++++ .++.|++++.|+++++++|++++||.||+|+|+|+| .|+||++||+
T Consensus 400 pI~a~t~~~~~~r~L~L~wGV~p~~~~~~~~~~~~~~e~~i~~a~~~l~~~g~v~~GD~VVv~aG~p~g-~G~TN~irV~ 478 (480)
T cd00288 400 PIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVG-SGSTNTMRIL 478 (480)
T ss_pred CEEEECCCHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCCCEEEEEE
T ss_conf 999985988999752350784899856655566689999999999999986998998989996277789-9654689999
Q ss_pred EE
Q ss_conf 94
Q gi|254780442|r 471 YI 472 (480)
Q Consensus 471 ~V 472 (480)
+|
T Consensus 479 ~V 480 (480)
T cd00288 479 TV 480 (480)
T ss_pred EC
T ss_conf 89
No 7
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1125.95 Aligned_cols=456 Identities=41% Similarity=0.645 Sum_probs=434.1
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECC
Q ss_conf 77775269994187757999999999739978999888889899999999999999974992799998789867886548
Q gi|254780442|r 2 VNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFA 81 (480)
Q Consensus 2 ~~mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~ 81 (480)
|-||||||||||||||+++++|++|+++|||+||||||||++|||+++++++|+++++.+++|+||+||||||||||++.
T Consensus 1 ~m~rkTKII~TiGPas~~~e~l~~li~aG~~v~RiN~SHg~~e~~~~~i~~iR~~~~~~~~~i~Il~Dl~GpkIRtg~~~ 80 (461)
T PRK05826 1 MMLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFK 80 (461)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECC
T ss_conf 99778639996688879989999999879999999889999999999999999999973997069998889836898647
Q ss_pred CCCEEECCCCEEEEECCC-CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCC
Q ss_conf 981896589999995324-5564442212664422211336526740684221023445411245513880871145644
Q gi|254780442|r 82 NSKVDLTEGQIFTLDNKD-SLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGIS 160 (480)
Q Consensus 82 ~~~i~l~~G~~v~l~~~~-~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn 160 (480)
++++.|++||+++|+.++ ..++++.|+++|+++++.+++||.|++|||.+.|+|++++++.+.|+|++||.|+++||||
T Consensus 81 ~~~i~l~~G~~v~i~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~~G~L~s~Kgvn 160 (461)
T PRK05826 81 DGKVELKIGDKFTLDTDQKEEGDQERVGLDYKDLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVLNGGPLSNNKGIN 160 (461)
T ss_pred CCCEEEECCCEEEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEECCCEEEECCCCCC
T ss_conf 98389705998999827877897688984307868657889989982785999999616986999974680984687754
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 678544555676556778998873488532505855773479999986200---34335553278566311788875331
Q gi|254780442|r 161 FPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ---NKIGLMSKIEKPRAIEYASEIIQLSD 237 (480)
Q Consensus 161 ip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~---~~~~IiaKIE~~~al~nl~eI~~~sD 237 (480)
+||..+++|+||+||++||+||+++ ++||||+||||+++||.++|++|.+ .+++||||||+++|++|||||+++||
T Consensus 161 lp~~~~~lp~lTekD~~di~fa~~~-~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sD 239 (461)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQ-GVDYIAVSFVRNAEDVEEARRLLREAGNCDAKIIAKIERAEAVDNLDEIIEASD 239 (461)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 2344357677986689999999976-999997468898678999999999729998448998368899873999998658
Q ss_pred EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 24752222002158767368999999998513983998057678888288984034778999985199689981444354
Q gi|254780442|r 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASG 317 (480)
Q Consensus 238 gimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G 317 (480)
||||||||||+|+|+|+||.+||+||++||++||||||||||||||++||+|||||++||||||+||+||+|||||||+|
T Consensus 240 gIMIARGDLgvEi~~e~vp~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~DavmLS~ETA~G 319 (461)
T PRK05826 240 GIMVARGDLGVEIPDAEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 319 (461)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHCCC
T ss_conf 99997785303268767499999999988754998999765689760799997277878999998368789974322378
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 46589999999988763010124444443203878888789999999986104-78689997088379999984188886
Q gi|254780442|r 318 SYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETL-RLSAIFCYTASGATGLRAARERPKLE 396 (480)
Q Consensus 318 ~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l-~a~aIiv~T~sG~tA~~iS~~RP~~p 396 (480)
+||++||++|++||++||++.+...... .......+..++++.+|+.+|.++ +|++|++||+||+||+++|+|||++|
T Consensus 320 ~yPv~aV~~m~~I~~~aE~~~~~~~~~~-~~~~~~~~~~~~~~~~av~~a~~~~~a~aIv~~T~sG~ta~~is~~RP~~p 398 (461)
T PRK05826 320 KYPVEAVEAMARICKGAEKEFLNVSKHR-LDSTFFDRIDEAIAMSAMYAANHLMGVKAIVALTESGRTARLMSRFRPGVP 398 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHCHHHHCCHH-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCC
T ss_conf 7889999999999999972323310000-012458981999999999998612498789998798189999995497998
Q ss_pred EEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
Q ss_conf 999929989998766653937999368799999999999999988887788779998522278
Q gi|254780442|r 397 IIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLG 459 (480)
Q Consensus 397 IiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~ 459 (480)
|+|+|++++++|||+|+|||+|+++++..+.+++++.|+++++++|++++||.||+++|.|.|
T Consensus 399 I~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~GD~vVvv~G~p~g 461 (461)
T PRK05826 399 IFAVTPHEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLERGLVESGDLVVLTQGDPMG 461 (461)
T ss_pred EEEECCCHHHHHHHHECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 999859889999736306838999379899899999999999987998998989999232599
No 8
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=1110.54 Aligned_cols=471 Identities=43% Similarity=0.697 Sum_probs=451.3
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEC
Q ss_conf 97777526999418775799999999973997899988888989999999999999997499279999878986788654
Q gi|254780442|r 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKF 80 (480)
Q Consensus 1 ~~~mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~ 80 (480)
|..||||||||||||||++++.|++|+++||||||+|||||++++|.+.++++|+++++.++|++||+||||||||+|.|
T Consensus 1 ~~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 1 ERMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEC
T ss_conf 98776634999978987998999999970586898856889868999999999999998399169997598984304753
Q ss_pred CCCCEEECCCCEEEEECCCC--CCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCC
Q ss_conf 89818965899999953245--5644422126644222113365267406842210234454112455138808711456
Q gi|254780442|r 81 ANSKVDLTEGQIFTLDNKDS--LGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKG 158 (480)
Q Consensus 81 ~~~~i~l~~G~~v~l~~~~~--~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kg 158 (480)
.++.++|+.|++|+|+.++. .++.+.++++|++|++++++|++||+|||.+.|+|.++.++.+.|+|++||.|++|||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCCEEEECCCEEEEECCCCCCCCCCCEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf 78848962698899963444568877578425788786538898899968904899999608879999983979568871
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 446785445556765567789988734885325058557734799999862003---43355532785663117888753
Q gi|254780442|r 159 ISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQL 235 (480)
Q Consensus 159 vnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~---~~~IiaKIE~~~al~nl~eI~~~ 235 (480)
||+||..+++|+|||||++||+|+++. +|||||+||||+++|+.++|++|.+. +++||||||+++|++|||||+++
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~-gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~ 239 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQ-GVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEA 239 (477)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 455898779887883478889979865-9988999666888899999999998379872499950587777579999986
Q ss_pred HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 31247522220021587673689999999985139839980576788882889840347789999851996899814443
Q gi|254780442|r 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETA 315 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa 315 (480)
||||||||||||+|+|+|+||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||
T Consensus 240 SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA 319 (477)
T COG0469 240 SDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETA 319 (477)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 38329986565053477873699999999998759960997063888840899871005688899872774356032020
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 54465899999999887630101244444432038788887899999999861047868999708837999998418888
Q gi|254780442|r 316 SGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKL 395 (480)
Q Consensus 316 ~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~ 395 (480)
.|+||+|+|++|++||.++|+...+..........+..+..++|+.|++++|..+++++|+++|+||+||+++|||||.+
T Consensus 320 ~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~ 399 (477)
T COG0469 320 AGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEA 399 (477)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCC
T ss_conf 68787999999999999874154223333320255446389999999999987457758999758877999996279999
Q ss_pred CEEEEECCHHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 699992998999876665393799936-87999999999999999888877887799985222788886415999994
Q gi|254780442|r 396 EIIALSPMIQTARRLALVWGIHCVVTE-DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 396 pIiaiT~~~~t~r~l~L~~GV~p~~~~-~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~V 472 (480)
||||+||+++++|+|+|+|||+|++++ ...+.++++..+++.+.+.|+++.||.+|+++|.|.+..|+||++||+.|
T Consensus 400 pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 400 PIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred CEEEECCCHHHHHHHCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEC
T ss_conf 689977988999641323061568725888868999999999988618465798899954752466777506999849
No 9
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=0 Score=1074.58 Aligned_cols=441 Identities=31% Similarity=0.470 Sum_probs=414.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCC---CCCCCCC
Q ss_conf 9789998888898999999999999999749927999987898678865489818965899999953245---5644422
Q gi|254780442|r 31 TDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDS---LGSSDRV 107 (480)
Q Consensus 31 ~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~~~~---~~~~~~i 107 (480)
|||||||||||++|||++++++||+++++.+++++||+||||||||||.|.++++.|++|+.+.|+.++. .++++.+
T Consensus 1 mnVaRlNfSHg~~e~h~~~i~~iR~~~~~~~~~v~Il~Dl~GPkIRtg~~~~~~~~l~~G~~v~l~~~~~~~~~g~~~~i 80 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDKF 80 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCCEE
T ss_conf 98999978999999999999999999998399859999688983388554799679658999999777633568876678
Q ss_pred CCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCC-EEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 1266442221133652674068422102344541-124551388087114564467854455567655677899887348
Q gi|254780442|r 108 MLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIG-FIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTC 186 (480)
Q Consensus 108 ~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~-~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~ 186 (480)
+++|++|++.+++||.|++|||.+.|+|.++.++ .+.|+|++||.|+++||+|+||..+++|+||+||++||+||+++
T Consensus 81 ~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~~v~~~V~~gG~L~s~KgvnlP~~~l~lp~lTekD~~di~fa~~~- 159 (454)
T PTZ00300 81 YIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ- 159 (454)
T ss_pred ECCHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCEEEEEEEECCEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf 3376898976589998998299699999997289769999965869638971657899788776998789999999974-
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 85325058557734799999862003--4335553278566311788875331247522220021587673689999999
Q gi|254780442|r 187 EVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIR 264 (480)
Q Consensus 187 ~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~ 264 (480)
++||||+||||+++||.++|++|.++ +++||||||+++|++|||||+++||||||||||||+|+|+|+||.+||+||+
T Consensus 160 ~vD~IalSFVr~a~DV~~~r~~l~~~g~~~~IiaKIE~~~av~NldeIi~~sDgIMVARGDLgvEi~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99989990679889999999999973897669986324666664698998587999945743031798897899999999
Q ss_pred HHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 98513983998057678888288984034778999985199689981444354465899999999887630101244444
Q gi|254780442|r 265 IARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMR 344 (480)
Q Consensus 265 ~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~ 344 (480)
+||++|||||+||||||||++||+|||||++||||||+||+||+|||||||+|+||+|||++|++||++||+..++...+
T Consensus 240 ~c~~~gkpvI~ATqmLeSMi~~p~PTRAEvsDVaNAV~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~ 319 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFF 319 (454)
T ss_pred HHHHCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99983992999732377643299986388989999998477878874521367788999999999999998401156555
Q ss_pred -HHHC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEEC
Q ss_conf -4320-38788887899999999861047868999708837999998418888699992998999876665393799936
Q gi|254780442|r 345 -SLRR-IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTE 422 (480)
Q Consensus 345 -~~~~-~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~ 422 (480)
.... ...+.+..+++|.+|+++|++++|++|++||+||+||+++|||||++||+|+|++++++|||+|+|||+|++++
T Consensus 320 ~~~~~~~~~~~~~~~aia~~a~~~a~~~~a~aIv~~T~sG~tA~~vs~~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~ 399 (454)
T PTZ00300 320 NSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFD 399 (454)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHEECCEEEEEEC
T ss_conf 44543278999989999999999998569989999828858999999659799999989879999865660585999866
Q ss_pred -----CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf -----879999999999999998888778877999852227888864159999945
Q gi|254780442|r 423 -----DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473 (480)
Q Consensus 423 -----~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~Vg 473 (480)
+.++.+++++.|+++++++|++++||.||+++|++ +.+|+||++||++|+
T Consensus 400 ~~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~vVvv~g~~-~~~G~TN~~ri~~Vs 454 (454)
T PTZ00300 400 AERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADH-KVKGYANQTRIILVS 454 (454)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CCCCCCCEEEEEEEC
T ss_conf 6346765699999999999999779988999899993489-999767479999979
No 10
>KOG2323 consensus
Probab=100.00 E-value=0 Score=931.67 Aligned_cols=468 Identities=34% Similarity=0.502 Sum_probs=440.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCEEEEEECC
Q ss_conf 7775269994187757999999999739978999888889899999999999999974992-799998789867886548
Q gi|254780442|r 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP-IGILIDLQGPKFRVGKFA 81 (480)
Q Consensus 3 ~mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~-i~Il~Dl~GpkiR~g~~~ 81 (480)
..|+|||+||+||+|++.|.|++|+++|||++|+|||||++++|+++++++|++...++.. ++||+|++||++|||.++
T Consensus 19 ~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg~~~ 98 (501)
T KOG2323 19 KRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTGDLK 98 (501)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCC
T ss_conf 00100147516786560999999997788579987688976789999988999986358751234531678737602357
Q ss_pred CC-CEEECCCCEEEEECCCCCCC--CCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCC
Q ss_conf 98-18965899999953245564--4422126644222113365267406842210234454112455138808711456
Q gi|254780442|r 82 NS-KVDLTEGQIFTLDNKDSLGS--SDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKG 158 (480)
Q Consensus 82 ~~-~i~l~~G~~v~l~~~~~~~~--~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kg 158 (480)
++ ++.|++|+.++|+.+..... ++.+++||+++.+++++||.|++|||.+.|.|.++..+.++|+|.++|.+.|+||
T Consensus 99 ~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~~~~~~c~v~n~g~l~s~k~ 178 (501)
T KOG2323 99 NGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGSRKG 178 (501)
T ss_pred CCCCEEECCCCEEEEECCHHHHCCCCEEEEEEHHHHHHCCCCCCEEEECCCHHEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 89855716997799962756605655079963677520003577799887314123445324741799964751113457
Q ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHH
Q ss_conf -446785445556765567789988734885325058557734799999862003--43355532785663117888753
Q gi|254780442|r 159 -ISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQL 235 (480)
Q Consensus 159 -vnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~ 235 (480)
+|+||...++|+|||||++|++||+++ ++|++++||+|.++|+.++|+.|+++ +++||+|||+++|+.|||||+.+
T Consensus 179 ~vnlpg~~vdlp~ltekd~~dl~fGven-~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl~~ 257 (501)
T KOG2323 179 NVNLPGTHVDLPALTEKDEKDLKFGVEN-KVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIE 257 (501)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCC-CCCEEEEEEEEEHHHHHHHHHHHCCCCCCCEEEEEECHHHHHCCHHHHHHH
T ss_conf 6568875266766675368998637778-877898310220678999999857366773599985233322227889874
Q ss_pred HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 31247522220021587673689999999985139839980576788882889840347789999851996899814443
Q gi|254780442|r 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETA 315 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa 315 (480)
|||+||||||||+|+|+|++|+.||.||.+||.+|||||+||||||||+.+|+|||||++||+|||+||+||+|||||||
T Consensus 258 sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta 337 (501)
T KOG2323 258 SDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETA 337 (501)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHH
T ss_conf 58159982787773687787899999999851179977872156786316999886625788898850676478526220
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCC
Q ss_conf 5446589999999988763010124444443--20387888878999999998610478689997088379999984188
Q gi|254780442|r 316 SGSYPVDAVRTMSLVASSAERDSSWLEMRSL--RRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERP 393 (480)
Q Consensus 316 ~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~--~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP 393 (480)
.|+||+++|++|.+||.++|.-.++...+.. .....+.+..+++|.+|+.+|.+..+.+|+++|.||++|+++|+|||
T Consensus 338 ~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP 417 (501)
T KOG2323 338 KGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRP 417 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHCCCC
T ss_conf 47670999999999887676667798899998753377776167899999998776254179999367641788744389
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCEEEEE------CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEE
Q ss_conf 8869999299899987666539379993------6879999999999999998888778877999852227888864159
Q gi|254780442|r 394 KLEIIALSPMIQTARRLALVWGIHCVVT------EDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNML 467 (480)
Q Consensus 394 ~~pIiaiT~~~~t~r~l~L~~GV~p~~~------~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~i 467 (480)
++||+++|...+++||++||+||+|+++ .+.++.+..++.+++.+++.|+++.||.+|++.|+.. ..|.+|++
T Consensus 418 ~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd~~vvv~~~~~-~~~~~~~i 496 (501)
T KOG2323 418 SVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVVVNKGKG-GASVTNTI 496 (501)
T ss_pred CCCEEEEECCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCC-CCCCEEEE
T ss_conf 99879995558999998765660136623653011005489999989888776051321987999825547-74530259
Q ss_pred EEEEE
Q ss_conf 99994
Q gi|254780442|r 468 RIAYI 472 (480)
Q Consensus 468 rv~~V 472 (480)
++.++
T Consensus 497 ~v~~~ 501 (501)
T KOG2323 497 RVEKV 501 (501)
T ss_pred EEEEC
T ss_conf 99509
No 11
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=100.00 E-value=0 Score=889.95 Aligned_cols=339 Identities=37% Similarity=0.603 Sum_probs=325.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 77526999418775799999999973997899988888989999999999999997499279999878986788654898
Q gi|254780442|r 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANS 83 (480)
Q Consensus 4 mrktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~ 83 (480)
||||||||||||||++++.|++|+++|||+||||||||+++||.+++++||+++++++++|+||+||||||||||.++++
T Consensus 1 mrrTKIiaTiGPas~~~~~l~~li~~G~dv~RiN~SHg~~e~~~~~i~~iR~~~~~~~~~v~Il~Dl~GpkIR~g~~~~~ 80 (348)
T pfam00224 1 LRRTKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAEEKLGGLVAIALDTKGPEIRTGLFKDG 80 (348)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCC
T ss_conf 98875999548887999999999986999999979999999999999999999998199807998368995355522688
Q ss_pred --CEEECCCCEEEEECCCC---CCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCC-EEEEEECCCCEEECCC
Q ss_conf --18965899999953245---56444221266442221133652674068422102344541-1245513880871145
Q gi|254780442|r 84 --KVDLTEGQIFTLDNKDS---LGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIG-FIKCKVIAGISIADRK 157 (480)
Q Consensus 84 --~i~l~~G~~v~l~~~~~---~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~-~i~c~V~~gG~l~s~K 157 (480)
+++|++|+.++|+.++. .++.+.++++||++++.+++||.|++|||++.|+|+++.++ .+.|+|++||.|+++|
T Consensus 81 ~~~i~l~~G~~v~~~~~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~~i~~~v~~gG~L~s~K 160 (348)
T pfam00224 81 KKDIELKAGDKFLVSTDPAYKGAGDKEKIYVDYKNLTKDVSPGGIILVDDGVLSLKVLEKDDDKTLVTEVLNGGVLGSRK 160 (348)
T ss_pred CEEEEECCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHCCCCCEEEECCCEEEEEEEEEECCCEEEEEEEECEEEECCC
T ss_conf 50389669989999647302578986889737177698758998898438818999999808973999997796997876
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 6446785445556765567789988734885325058557734799999862003--43355532785663117888753
Q gi|254780442|r 158 GISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQL 235 (480)
Q Consensus 158 gvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~--~~~IiaKIE~~~al~nl~eI~~~ 235 (480)
|+|+||..+++|+||+||++||+||+++ ++||||+||||+++||.++|+++.++ +++||||||+++|++||+||+++
T Consensus 161 gvn~p~~~~~lp~lTekD~~di~~a~~~-~vD~ialSFVrsa~Di~~lr~~l~~~~~~~~IIaKIE~~~al~Nl~eIi~~ 239 (348)
T pfam00224 161 GVNLPGTDVDLPALSEKDKADLRFGVKQ-GVDMIFASFVRTASDVLEVREVLGEAGKDIKIIAKIENQEGVNNFDEILEA 239 (348)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6578998567566887679999999977-999999878899999999999999738876059984478988678889985
Q ss_pred HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 31247522220021587673689999999985139839980576788882889840347789999851996899814443
Q gi|254780442|r 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETA 315 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa 315 (480)
||||||||||||+|+|+|+||.+||+||++|+++||||||||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 240 sDgImIARGDLg~ei~~e~vp~~Qk~ii~~~~~~~kpvivATqmLeSM~~~~~PTRAEv~Dvanav~dGad~vmLs~ETa 319 (348)
T pfam00224 240 SDGIMVARGDLGIEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 319 (348)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 88899844764455898898999999999999859929998275776514999856999999999983888899774021
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 5446589999999988763010124444
Q gi|254780442|r 316 SGSYPVDAVRTMSLVASSAERDSSWLEM 343 (480)
Q Consensus 316 ~G~yP~~~v~~~~~i~~~~E~~~~~~~~ 343 (480)
+|+||++||++|++||++||+..+|.+.
T Consensus 320 ~G~~P~~~v~~l~~I~~~~E~~~~~~~~ 347 (348)
T pfam00224 320 KGNYPVEAVKMMARICLEAEKALPHRNV 347 (348)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 7879999999999999998716464530
No 12
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=0 Score=864.89 Aligned_cols=330 Identities=37% Similarity=0.614 Sum_probs=318.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCE
Q ss_conf 52699941877579999999997399789998888898999999999999999749927999987898678865489818
Q gi|254780442|r 6 RIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKV 85 (480)
Q Consensus 6 ktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i 85 (480)
.|++||||||||+++++|++|+++|||+||||||||+++||+++++++|++. ++++||+||||||+|||.++++++
T Consensus 2 ~~~~IaTiGPas~~~e~l~~li~aGvnv~RiN~SHg~~e~~~~~i~~ir~~~----~~i~Il~Dl~GpkiR~g~~~~~~i 77 (352)
T PRK06739 2 TIDRVCTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD----DSIKILGDVQGPKIRLGEIKGEQI 77 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCCEEEECCCCEEEEEECCCCCE
T ss_conf 8777998799869999999999879989999899999999999999999747----546067708898258887169817
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCC
Q ss_conf 96589999995324556444221266442221133652674068422102344541124551388087114564467854
Q gi|254780442|r 86 DLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTF 165 (480)
Q Consensus 86 ~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~ 165 (480)
.|++|+.+.|+.++..++++.++++|+++++.+++||+|++|||.+.|+|++++++.+.|+|++||.|++|||+|+||..
T Consensus 78 ~l~~g~~v~l~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~i~~~~i~~~V~~gG~L~s~KGVnlP~~~ 157 (352)
T PRK06739 78 TLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGAI 157 (352)
T ss_pred EECCCCEEEEECCCCCCCCCEEECCHHHHHHHCCCCCEEEEECCCEEEEEEEECCCEEEEEEEECCEECCCCCEECCCCC
T ss_conf 93489989984566578776674468998864778988998089089999981398699998427281388853168876
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 4555676556778998873488532505855773479999986200---3433555327856631178887533124752
Q gi|254780442|r 166 LTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ---NKIGLMSKIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 166 i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~---~~~~IiaKIE~~~al~nl~eI~~~sDgimia 242 (480)
+++|+||+||++||+||+++ ++||||+||||+++||+++|+++++ .+++||||||+++|++||+||+++|||||||
T Consensus 158 l~lp~LTekD~~dI~~a~~~-~vD~valSFVrsa~DI~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sDgIMIA 236 (352)
T PRK06739 158 VSLPAITEKDKKDIQFLLEE-DVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred CCCCCCCCCCHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCEEEEE
T ss_conf 67766880269999999875-99999985779999999999999972688862799864998997699999855946996
Q ss_pred CCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 22200215876736899999999851398399805767888828898403477899998519968998144435446589
Q gi|254780442|r 243 RGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVD 322 (480)
Q Consensus 243 RGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~ 322 (480)
|||||+|+|+|+||.+||+||++|+++||||||||||||||++||+|||||++||||||+||+||+|||+|||+|+||++
T Consensus 237 RGDLgvei~~e~vp~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanav~dG~D~vmLs~ETA~G~yPv~ 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPVE 316 (352)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHCCCCCHHH
T ss_conf 58644636988989999999999998299789963628876349988769999999999847988997220117979999
Q ss_pred HHHHHHHHHHHHHCCHHH
Q ss_conf 999999988763010124
Q gi|254780442|r 323 AVRTMSLVASSAERDSSW 340 (480)
Q Consensus 323 ~v~~~~~i~~~~E~~~~~ 340 (480)
+|+||++||++||+....
T Consensus 317 ~V~~m~~i~~~aE~~~~~ 334 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999876612
No 13
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=0 Score=722.64 Aligned_cols=328 Identities=33% Similarity=0.526 Sum_probs=306.4
Q ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC
Q ss_conf 775269994187-7579999999997399789998888898999999999999999749927999987898678865489
Q gi|254780442|r 4 LRRIKIISTLGP-SSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN 82 (480)
Q Consensus 4 mrktKIi~TlGP-as~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (480)
-|.|.|+.|+.. |..+++.|++|+++||||+|||||||++|+|.++|++||+++++.|++|+|++||+|||||||.+..
T Consensus 132 ~r~trIMVTlp~EAa~D~~~ir~Ll~AGMdVARINcAHg~pe~w~~mI~~VR~Aa~~~Gr~~~IlmDL~GPKIRtG~l~~ 211 (606)
T PRK08187 132 GRPTRIMVTLPTEAATDPDLVRRLLKRGMDIARINCAHDDPEAWRAMIEHVRTAEEETGRRCRVLMDLAGPKIRTGPIAP 211 (606)
T ss_pred CCCEEEEEECCHHHHCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCC
T ss_conf 99637999688022069799999997699879987688999999999999999999729941799877998311314788
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 8-------------------------------------------------------------------------------
Q gi|254780442|r 83 S------------------------------------------------------------------------------- 83 (480)
Q Consensus 83 ~------------------------------------------------------------------------------- 83 (480)
+
T Consensus 212 gp~v~k~~p~rd~~G~v~~Pa~~wl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~~~~~~ 291 (606)
T PRK08187 212 GPGVVKLRPTRDRYGRVVTPARLWITASPAPESLPGDPAFCLEVTAEWLAKLEQGDEILLTDARGKKRKLVVVRVDDGGV 291 (606)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCEEECCCCCCC
T ss_conf 87543124443443433452021013456666666665322234403333115575011002234421000001355430
Q ss_pred ---------------------------------CEEECCCCEEEEECCCCCCCC------CCCCCCCCCCHHHCCCCCEE
Q ss_conf ---------------------------------189658999999532455644------42212664422211336526
Q gi|254780442|r 84 ---------------------------------KVDLTEGQIFTLDNKDSLGSS------DRVMLPHPEIFASIKIGDRL 124 (480)
Q Consensus 84 ---------------------------------~i~l~~G~~v~l~~~~~~~~~------~~i~i~y~~l~~~ik~Gd~I 124 (480)
.+.|+.|+.+.++.+...+.. ..|.++||+++.++++||.|
T Consensus 292 ~a~~~~~ay~~~G~~l~~~~~~~~v~~~p~~e~~i~L~~Gd~l~Lt~d~~~~~~~~~~~~~~i~ctlp~l~~~v~~G~~I 371 (606)
T PRK08187 292 LAEGDKTAYIQNGTKLRRGHDRTEVGGVPAVEQRLTLKVGDRLLLTRDDAPGDPAAGGGGPRISCTLPEVVDAVRVGDRV 371 (606)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHCCCCCEE
T ss_conf 00023321124564222344433335666544421303588799950566777322677745640406568647899979
Q ss_pred EEECCCEEECCCCCCCCEEEEEEC----CCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCH
Q ss_conf 740684221023445411245513----8808711456446785445556765567789988734885325058557734
Q gi|254780442|r 125 LIDDGRVKLCVQEKGIGFIKCKVI----AGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSAD 200 (480)
Q Consensus 125 ~idDG~i~l~V~~~~~~~i~c~V~----~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~ 200 (480)
++|||+|.++|++++++.+.|+|. +||+|+++||+||||..+++|+||+||++||.|++++ +|||++||||+++
T Consensus 372 l~DDGkI~~~V~~v~~~~v~~~V~~a~~~G~kL~s~KGiN~P~~~l~lp~lT~kD~~dl~f~~~~--~D~va~SFVr~~~ 449 (606)
T PRK08187 372 WFDDGKIGAVVVKVTEDALEVRVTHARPGGSKLKSGKGINLPDTELPLPALTDKDLEDLAFVAKH--ADIVGLSFVQSPE 449 (606)
T ss_pred EEECCCEEEEEEEEECCEEEEEEEECCCCCCEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHC--CCEEEEECCCCHH
T ss_conf 99578079999998588689999972788866648986458999889988987799999999856--9989985158899
Q ss_pred HHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHH-----HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 799999862003---43355532785663117888753-----3124752222002158767368999999998513983
Q gi|254780442|r 201 DLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQL-----SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKP 272 (480)
Q Consensus 201 di~~~r~~l~~~---~~~IiaKIE~~~al~nl~eI~~~-----sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kp 272 (480)
||..+|++|.+. +++||||||+++|++||++|+.+ +|||||||||||+|+|+|+||.+||+||++|+.+|||
T Consensus 450 Dv~~l~~~l~~~~~~~~~iiaKIE~~~a~~nl~~Il~~Am~~~~dgvMVARGDLgVE~~~e~vp~~Qk~ii~~c~~~~~P 529 (606)
T PRK08187 450 DVEYLQEALAQLGADHLGVVLKIETRPAFENLPRILLTAMRRPPFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVP 529 (606)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999996589887489985698998689999985053678469997875546669777289999999999972997
Q ss_pred EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9980576788882889840347789999851996899814443544658999999998876301012
Q gi|254780442|r 273 VVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSS 339 (480)
Q Consensus 273 vivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~ 339 (480)
||+||||||||+.||+|||||+||||||+. +|||||+ .|.||+++|++|++|.++.|.+..
T Consensus 530 VI~ATQmLeSM~~~~~PTRAEvtDvAna~~--adcVMLN----KGpyi~eAV~~L~~Il~Rm~~hq~ 590 (606)
T PRK08187 530 VIWATQVLESLAKKGLPSRAEITDAAMALR--AECVMLN----KGPHIVEAVTVLDDILRRMQEHQR 590 (606)
T ss_pred EEEECCHHHHHCCCCCCCCHHHHHHHHHHC--CCEEEEC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 799500387635188987254999875660--4877617----998889999999999999888775
No 14
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=99.96 E-value=1.4e-28 Score=230.55 Aligned_cols=116 Identities=37% Similarity=0.627 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH
Q ss_conf 78999999998610478689997088379999984188886999929989998766653937999368-79999999999
Q gi|254780442|r 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTED-ASDSDDMVNRA 434 (480)
Q Consensus 356 ~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~-~~~~~~~i~~a 434 (480)
+|+||.+|+++|++++|++|++||+||+||+++|+|||.+||||+|++++++|||+|+|||+|+++++ ..+.|++++.+
T Consensus 1 teaia~sA~~~A~~l~akaIv~~T~sG~tA~~iS~~RP~~pI~a~T~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~i~~a 80 (117)
T pfam02887 1 TEAIARSAVEAAKELGAKAIVVLTESGRTARLVSKYRPGAPIIAVTPNEGTARRLALYWGVHPVLGDERSISTDEIIAEA 80 (117)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 97899999999997699999998898779999995499986899659989999888765970598257779999999999
Q ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 9999988887788779998522278888641599999
Q gi|254780442|r 435 CRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAY 471 (480)
Q Consensus 435 ~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~ 471 (480)
+++++++|++++||.||+++|+|.+..|+||++||++
T Consensus 81 ~~~l~~~g~~~~GD~vVvv~G~p~~~~g~TN~iri~~ 117 (117)
T pfam02887 81 LRVAKDAGLIKKGDLVVVTAGVPVGTSGGTNTLKVIT 117 (117)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 9999986999999989998463599887645999979
No 15
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=98.68 E-value=2.9e-07 Score=73.23 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCEEEEEECCHHHHHHHHHHHHH--HHEEEEECCCCCHHCCH------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf 43355532785663117888753--31247522220021587------67368999999998513983998057678888
Q gi|254780442|r 213 KIGLMSKIEKPRAIEYASEIIQL--SDAVMVARGDLGVEMAL------ELIPGIQKKLIRIARQLGKPVVIATQMLESMV 284 (480)
Q Consensus 213 ~~~IiaKIE~~~al~nl~eI~~~--sDgimiaRGDLg~e~~~------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~ 284 (480)
++.+++-||+.+|++|+|||+.. -|+++|..+||+..++. +++-..-+++++.|+++|||+=+-+
T Consensus 145 ~~~vi~qIEt~~av~nldeI~av~GvD~ifiGp~DLs~slG~~g~~~~pev~~ai~~v~~~~~~~gk~~G~~~------- 217 (256)
T PRK10558 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILA------- 217 (256)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC-------
T ss_conf 3478888536789988999967899888998858999865999999997999999999999998599879936-------
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 288984034778999985199689981444
Q gi|254780442|r 285 TSPFPTRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 285 ~~p~PTRaEv~Dvanav~dG~D~imLs~ET 314 (480)
++. .|..-.+..|++-+..+.++
T Consensus 218 ----~~~---~~a~~~~~~G~~~i~~g~D~ 240 (256)
T PRK10558 218 ----PVE---ADARRYLEWGATFVAVGSDL 240 (256)
T ss_pred ----CCH---HHHHHHHHCCCCEEEEHHHH
T ss_conf ----999---99999997699899972799
No 16
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=98.68 E-value=3.4e-07 Score=72.81 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=69.0
Q ss_pred CCCEEEEEECCHHHHHHHHHHHH--HHHEEEEECCCCCHHCCH------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 34335553278566311788875--331247522220021587------6736899999999851398399805767888
Q gi|254780442|r 212 NKIGLMSKIEKPRAIEYASEIIQ--LSDAVMVARGDLGVEMAL------ELIPGIQKKLIRIARQLGKPVVIATQMLESM 283 (480)
Q Consensus 212 ~~~~IiaKIE~~~al~nl~eI~~--~sDgimiaRGDLg~e~~~------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM 283 (480)
.++.+++-||+.+|++|+|||+. .-|+++|..+||+..++. .++-.+-+++++.|+++|||+=+-.
T Consensus 137 ~~~~vi~qIEt~~av~nldeI~av~GvD~ifiGP~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~Gi~~------ 210 (249)
T TIGR03239 137 DNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA------ 210 (249)
T ss_pred HCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC------
T ss_conf 44278999658899987999967899888998848999876999999997999999999999998599669827------
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8288984034778999985199689981444
Q gi|254780442|r 284 VTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 284 ~~~p~PTRaEv~Dvanav~dG~D~imLs~ET 314 (480)
++- .+..-.+..|++-+.++.++
T Consensus 211 -----~~~---~~~~~~~~~G~~~i~~g~D~ 233 (249)
T TIGR03239 211 -----PVE---ADARRYLEWGATFVAVGSDL 233 (249)
T ss_pred -----CCH---HHHHHHHHCCCCEEEEHHHH
T ss_conf -----999---99999998699899966899
No 17
>pfam03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Probab=98.47 E-value=1.5e-06 Score=68.06 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=90.4
Q ss_pred HHHHCCCCCEECCCCCCCCHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHH--HEEEEECCCCCHH
Q ss_conf 8873488532505855773479999986200---------3433555327856631178887533--1247522220021
Q gi|254780442|r 181 AALQTCEVDWVALSFIQSADDLLEIRKIISQ---------NKIGLMSKIEKPRAIEYASEIIQLS--DAVMVARGDLGVE 249 (480)
Q Consensus 181 ~a~~~~~vD~ialSfVr~~~di~~~r~~l~~---------~~~~IiaKIE~~~al~nl~eI~~~s--DgimiaRGDLg~e 249 (480)
.++.. +.|.|.++.|++++|++.+.+.+.. .++.|++-|||.+|+.|+++|.... |++++.-.||..+
T Consensus 79 ~~l~~-g~~gI~lPkv~s~~~v~~~~~~l~~~~~~~~~~~~~~~ii~~IEt~~gl~~~~eIaa~~~v~~l~~G~~Dls~~ 157 (221)
T pfam03328 79 AVLDA-GAQGVLVPKVETAEEAREAVSACRYPPKGIRGANGNTCLLAQIESALGVLNADEIAAVEGLDGVFLGPEDLSAD 157 (221)
T ss_pred HHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHH
T ss_conf 99964-88889992669999999999997435421268889727999978989999699997489987899878999998
Q ss_pred CCH------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 587------6736899999999851398399805767888828898403477899998519968998
Q gi|254780442|r 250 MAL------ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIML 310 (480)
Q Consensus 250 ~~~------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imL 310 (480)
++. ..+..+..+++..|+.+|+|.|-.-. .+ +.++--- ..+..++...|.||-++
T Consensus 158 lG~~~~~~~~~~~~ar~~i~~aaraagi~~id~v~-~d--~~d~~~~---~~~~~~~~~lGf~Gk~~ 218 (221)
T pfam03328 158 LGTLRSPGGPEVLFARTRILAAARAAGIAAFDTVA-SD--IDDAEGF---LAEGALFVALGFDGKLL 218 (221)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC-CC--CCCHHHH---HHHHHHHHHHCCCCEEC
T ss_conf 39999998237899999999999982999051257-98--1229999---99999999738584041
No 18
>PRK10128 putative aldolase; Provisional
Probab=98.45 E-value=3e-06 Score=65.79 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHH--HHEEEEECCCCCHHCCH------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 343355532785663117888753--31247522220021587------6736899999999851398399805767888
Q gi|254780442|r 212 NKIGLMSKIEKPRAIEYASEIIQL--SDAVMVARGDLGVEMAL------ELIPGIQKKLIRIARQLGKPVVIATQMLESM 283 (480)
Q Consensus 212 ~~~~IiaKIE~~~al~nl~eI~~~--sDgimiaRGDLg~e~~~------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM 283 (480)
.++.+++-||+.+|++|+|||+.. -|+++|.-+||+..+++ .++-.+-+++++.|+++|||+=+-..
T Consensus 127 ~~~~vi~qIEt~~av~nldeI~av~GvD~~fiGp~DLs~slG~pg~~~~p~v~~ai~~v~~~~~~~gk~~G~~~~----- 201 (250)
T PRK10128 127 DSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV----- 201 (250)
T ss_pred HCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC-----
T ss_conf 413665441558999879998588998889988488998659999999869999999999999986997688379-----
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8288984034778999985199689981444
Q gi|254780442|r 284 VTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 284 ~~~p~PTRaEv~Dvanav~dG~D~imLs~ET 314 (480)
...+....+-.|++-+.++.++
T Consensus 202 ---------~~~~a~~~~~~G~~~v~~g~D~ 223 (250)
T PRK10128 202 ---------APDMAQQCLAWGANFVAVGVDT 223 (250)
T ss_pred ---------CHHHHHHHHHCCCCEEEEHHHH
T ss_conf ---------9999999997699999865799
No 19
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0018 Score=45.31 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=64.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHH--HHEEEEECCCCCHHCCH------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 343355532785663117888753--31247522220021587------6736899999999851398399805767888
Q gi|254780442|r 212 NKIGLMSKIEKPRAIEYASEIIQL--SDAVMVARGDLGVEMAL------ELIPGIQKKLIRIARQLGKPVVIATQMLESM 283 (480)
Q Consensus 212 ~~~~IiaKIE~~~al~nl~eI~~~--sDgimiaRGDLg~e~~~------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM 283 (480)
.++-+++.|||++|++|||+|+.. .|||.|.-+||+..++. .+|-..-..++.+.+.+||.-=+-+
T Consensus 143 ~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~------ 216 (255)
T COG3836 143 DEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA------ 216 (255)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC------
T ss_conf 03088878734888977888871578776987778879874999999987999999999999996486441035------
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8288984034778999985199689981444
Q gi|254780442|r 284 VTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 284 ~~~p~PTRaEv~Dvanav~dG~D~imLs~ET 314 (480)
+ +=.+...-+.-|+.=+-+..+|
T Consensus 217 ---~-----~p~~a~~yl~lGa~fvavG~D~ 239 (255)
T COG3836 217 ---A-----DPADARRYLALGATFVAVGSDT 239 (255)
T ss_pred ---C-----CHHHHHHHHHHCCEEEEEECCH
T ss_conf ---8-----9999999998388699982507
No 20
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=96.98 E-value=0.012 Score=39.33 Aligned_cols=148 Identities=21% Similarity=0.265 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 555676556778998873488532505855773479999986200------------34335553278566311788875
Q gi|254780442|r 167 TTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ------------NKIGLMSKIEKPRAIEYASEIIQ 234 (480)
Q Consensus 167 ~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~------------~~~~IiaKIE~~~al~nl~eI~~ 234 (480)
..|.+-.--..+|.-|...+++- |.+.+|.+.+++.++|+++.+ .++++-+-||++.+.-.+|++++
T Consensus 116 ~~p~lf~~QlrAilrAa~~g~l~-Im~PmVt~~~E~~~~r~~~~~~~~~l~~~~~~~~~~~iG~MiEvPsaa~~~d~l~~ 194 (292)
T pfam02896 116 DYPEIFRTQLRAILRASAFGNLE-IMFPMVATVEELREAKRIIEEVKAELDKELGVDPDIKVGIMIEIPSAALLADQLAK 194 (292)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHH
T ss_conf 17076999999999987208807-98358799899999999999999999861797878418999824699995999986
Q ss_pred HHHEEEEECCCCC-----HHCC-----------HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 3312475222200-----2158-----------76736899999999851398399805767888828898403477899
Q gi|254780442|r 235 LSDAVMVARGDLG-----VEMA-----------LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA 298 (480)
Q Consensus 235 ~sDgimiaRGDLg-----~e~~-----------~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dva 298 (480)
.+|.+=|.--||. ++=. ..-+-..-+++++.|+++||||=+..||-. +| + -+.
T Consensus 195 ~~DF~SIGTNDLtQy~la~DR~n~~v~~l~d~~~Pavlr~i~~vi~~a~~~g~~vsiCGE~a~----dp-----~--~~~ 263 (292)
T pfam02896 195 EVDFFSIGTNDLTQYTLAVDRDNERVAYLYDPLHPAVLRLIKQVIRAAHRKGKWVGICGEMAG----DP-----S--AVP 263 (292)
T ss_pred HCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC----CH-----H--HHH
T ss_conf 368779644388889887435773335436999769999999999999987999998088767----98-----9--999
Q ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9985199689981444354465899999999887630
Q gi|254780442|r 299 TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 299 nav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E 335 (480)
-.+--|.|.+=.| | .+|-.++..++++|
T Consensus 264 ~L~~lGi~~lSv~--------p-~~i~~vk~~ir~~~ 291 (292)
T pfam02896 264 LLLGLGLDEFSMS--------P-TSVPRARALAAQIA 291 (292)
T ss_pred HHHHCCCCEEEEC--------H-HHHHHHHHHHHHHC
T ss_conf 9998799979988--------7-77999999999863
No 21
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=96.39 E-value=0.097 Score=32.51 Aligned_cols=121 Identities=25% Similarity=0.288 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHCCCCCEECCCC--CCCCHHHHHHHHHHHC-CCCEEEE-EECCHHHHHHHHHHHHHHHEEEEE------
Q ss_conf 55677899887348853250585--5773479999986200-3433555-327856631178887533124752------
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSF--IQSADDLLEIRKIISQ-NKIGLMS-KIEKPRAIEYASEIIQLSDAVMVA------ 242 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSf--Vr~~~di~~~r~~l~~-~~~~Iia-KIE~~~al~nl~eI~~~sDgimia------ 242 (480)
+.|++-.+.-++ .++|++.+.- -.+..-++.++.+-.. .++.||+ -+-|.++.++|-+ ..+|+|.|.
T Consensus 227 ~~~~eRa~~Lv~-AGvDvivIDtAhGhs~~vi~~ik~ik~~~~~v~viaGNv~T~~~a~~L~~--aGaD~vkVGiG~Gsi 303 (486)
T PRK05567 227 ADNEERAEALVK-AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIE--AGADAVKVGIGPGSI 303 (486)
T ss_pred CCHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH--CCCCEEEECCCCCCC
T ss_conf 018999999997-69988995044521577899999997407877368751201999999997--298769965668866
Q ss_pred ---CCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf ---222002158767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 243 ---RGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 243 ---RGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
|-=.|+-+| ++- +--..-..+++++.|||--.-+-.| .||+-|+--|||++||.
T Consensus 304 CtTr~v~GvGvP--q~t-Av~~~a~~a~~~~v~iIADGGi~~s------------Gdi~KAla~GAd~VMlG 360 (486)
T PRK05567 304 CTTRIVAGVGVP--QIT-AIADAAEAAKKTGIPVIADGGIRYS------------GDIAKALAAGASAVMLG 360 (486)
T ss_pred CCCCCCCCCCCC--HHH-HHHHHHHHHHHCCCEEEECCCCCCC------------CHHHHHHHCCCCEEEEC
T ss_conf 513432477864--699-9999999998659779964883543------------57999986589889866
No 22
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.38 E-value=0.058 Score=34.16 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHCCCCCEECCCCCC--CCH---HHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCC
Q ss_conf 65567789988734885325058557--734---799999862003433555-327856631178887533124752222
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALSFIQ--SAD---DLLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGD 245 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialSfVr--~~~---di~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGD 245 (480)
++.|++-++-.++. ++|++.++=.+ +.. -++.+|+... +..||| -+.|.++.++|- ...+|+|-|.-|-
T Consensus 92 ~~~~~~r~~~l~~a-g~d~i~IDvAhG~~~~~~~~ik~ir~~~p--~~~IiaGNV~T~e~a~~L~--~~GaD~vkVGiG~ 166 (325)
T cd00381 92 REDDKERAEALVEA-GVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIAGNVVTAEAARDLI--DAGADGVKVGIGP 166 (325)
T ss_pred CHHHHHHHHHHHHC-CCCEEEEECHHCCCHHHHHHHHHHHHHCC--CCCEEECCCCCHHHHHHHH--HCCCCEEEECCCC
T ss_conf 86289999999976-99899987000345889999999997689--9756864566899999998--6699899975757
Q ss_pred CCHHCCHHH----HHHHHHHHHHHH----HHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 002158767----368999999998----513983998057678888288984034778999985199689981
Q gi|254780442|r 246 LGVEMALEL----IPGIQKKLIRIA----RQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 246 Lg~e~~~e~----vp~~Qk~ii~~~----~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
=++.+--+. +| |-.-|..| +.++.|||--.-+=. ..||+-|+--|||++||.
T Consensus 167 GS~CtTr~~tGvG~P--q~sai~~~a~~~~~~~v~iiaDGGi~~------------~Gdi~KAla~GAd~VMlG 226 (325)
T cd00381 167 GSICTTRIVTGVGVP--QATAVADVAAAARDYGVPVIADGGIRT------------SGDIVKALAAGADAVMLG 226 (325)
T ss_pred CCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCCEEECCCCCC------------HHHHHHHHHCCCCEEEEC
T ss_conf 777666010178874--588999999976344985894487331------------078888875288789846
No 23
>PRK08227 aldolase; Validated
Probab=96.29 E-value=0.054 Score=34.41 Aligned_cols=187 Identities=18% Similarity=0.136 Sum_probs=102.4
Q ss_pred EEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHH--HHCCCEEEEEHHHHHHHHHCCCCCHHH-H
Q ss_conf 5327856631178887533124752222002158767368999999998--513983998057678888288984034-7
Q gi|254780442|r 218 SKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIA--RQLGKPVVIATQMLESMVTSPFPTRAE-V 294 (480)
Q Consensus 218 aKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~--~~~~kpvivATq~leSM~~~p~PTRaE-v 294 (480)
.-+|+.+ +.++.++..+|+||.-||=| +.| ....++.++-+---. ...+-|+.-. +
T Consensus 66 ~GLed~~--~~I~~l~~~aDAi~l~kGil-----------------r~~~~~~~~~~lil~~s~~t--~~~~~~~~k~lv 124 (291)
T PRK08227 66 TGLERID--INIAPLFEYADVLMCTRGIL-----------------RSVVPPATNKPVVLRASGGN--SILKELSNEAVA 124 (291)
T ss_pred CCCCCHH--HHHHHHHHCCCEEEECHHHH-----------------HHHCCCCCCCEEEEEEECCC--CCCCCCCCCEEE
T ss_conf 6631679--99999860399899766776-----------------32046779940799980687--666787887555
Q ss_pred HHHHHHHHCCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 78999985199689981444354-46589999999988763010124444443203878888789999999986104786
Q gi|254780442|r 295 SDVATAVFEEADAIMLSAETASG-SYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLS 373 (480)
Q Consensus 295 ~Dvanav~dG~D~imLs~ETa~G-~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~ 373 (480)
++|-.||.-|||||...-= +| .+-.+.++-+.+|..+++.+-.-. ......-.......+.+++ |+.+|.+|+|+
T Consensus 125 ~sVeeAvrlGAdAVsv~v~--iGs~~E~~~l~~lg~v~~e~~~~GmPl-la~~~~g~~~~~d~~~va~-aaRia~ELGAD 200 (291)
T PRK08227 125 VDMEDAVRLNVCAVAAQVF--IGSEYETQSIKNIIQLVDAGLRYGMPT-MAVTAVGKDMVRDARYFSL-ATRIAAEMGAQ 200 (291)
T ss_pred ECHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCHHHHHH-HHHHHHHHCCC
T ss_conf 3499998679978999863--599328999999999999999829987-9983468777777899999-99999997899
Q ss_pred EEEEECCCH-HHHHHHHHHCCCCCEE-EEECCHHHHHHHHHHC-----CCEEEEEC---CC-CCHHHHHH
Q ss_conf 899970883-7999998418888699-9929989998766653-----93799936---87-99999999
Q gi|254780442|r 374 AIFCYTASG-ATGLRAARERPKLEII-ALSPMIQTARRLALVW-----GIHCVVTE---DA-SDSDDMVN 432 (480)
Q Consensus 374 aIiv~T~sG-~tA~~iS~~RP~~pIi-aiT~~~~t~r~l~L~~-----GV~p~~~~---~~-~~~~~~i~ 432 (480)
.|=+.- ++ ...+.++.. .+|++ |--+......-|...| |..-+.+- +. .+...+++
T Consensus 201 iVKt~y-t~e~f~~Vv~a~--pvPVliaGG~k~~d~e~L~~v~~a~~aGa~Gv~~GRNVfQ~~~P~~~~~ 267 (291)
T PRK08227 201 IIKTYY-VEKGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDQGASGVDMGRNIFQSDAPVAMIK 267 (291)
T ss_pred EEECCC-CHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHH
T ss_conf 885069-734599999648--9978996799898699999999999769936872400235899899999
No 24
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.012 Score=39.10 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=93.8
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC----CCE-EEEEECCHHHHHHHHHHHHHH---HEEEEECCCCC
Q ss_conf 7789988734885325058557734799999862003----433-555327856631178887533---12475222200
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN----KIG-LMSKIEKPRAIEYASEIIQLS---DAVMVARGDLG 247 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~----~~~-IiaKIE~~~al~nl~eI~~~s---DgimiaRGDLg 247 (480)
..|+.-... .++|.|-|.-++++.|+.++...+... ++. +++=|||..|+.|..+|..++ .|+.+.=.||.
T Consensus 70 ~~Dl~av~~-~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 70 ADDLAAVVR-SAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGANDLA 148 (283)
T ss_pred HHHHHHHHH-CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHCHHHHHCCCCCEEEEEECHHHHH
T ss_conf 889999973-3898898158686588999999851100015521367763068877289999617665355576599999
Q ss_pred HHCCHH-------HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 215876-------736899999999851398399805767888828898403477899998519968998
Q gi|254780442|r 248 VEMALE-------LIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIML 310 (480)
Q Consensus 248 ~e~~~e-------~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imL 310 (480)
..++.. .+..+-..|+..|+.+|++.|=. .-+=+++|--.+ .+..++.-.|.||-++
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~---V~~d~~d~~g~~---~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG---VYTDINDPEGFA---REAAQAAALGFDGKTC 212 (283)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHH---HHHHHHHHCCCCCCCC
T ss_conf 983898788874149999999999998759973245---542447979999---9999999749786411
No 25
>pfam08981 consensus
Probab=96.20 E-value=0.026 Score=36.72 Aligned_cols=104 Identities=18% Similarity=0.324 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCC--CCCEEEEECC------------HHHHHHHHHHCCCEEE-
Q ss_conf 878999999998610478689997088379999984188--8869999299------------8999876665393799-
Q gi|254780442|r 355 GADVISSAARQIAETLRLSAIFCYTASGATGLRAARERP--KLEIIALSPM------------IQTARRLALVWGIHCV- 419 (480)
Q Consensus 355 ~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP--~~pIiaiT~~------------~~t~r~l~L~~GV~p~- 419 (480)
-++.....|++-|.+++.+.|++.|.||.||+++...-+ ...++++|++ +.+.++| --.|+.-+
T Consensus 9 NT~~tl~~a~~ra~e~gI~~iVvASssG~TA~k~~e~~~~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L-~~~G~~V~t 87 (181)
T pfam08981 9 NTEDTLELAAERAKELGIKHIVVASSSGETALKAAEALEGTNLNVVVVTHHAGFSEPGEQEMDPEVRKEL-EERGVKVLT 87 (181)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH-HHCCCEEEE
T ss_conf 3899999999999976997699980787799999987135895599994645778998563899999999-977988999
Q ss_pred -----------EECCCC--CHHHHHHHHHHH--------------HHHCCCCCCCCEEEEEEEECCC
Q ss_conf -----------936879--999999999999--------------9988887788779998522278
Q gi|254780442|r 420 -----------VTEDAS--DSDDMVNRACRI--------------VVEQGFGKPGDRIIISAGLPLG 459 (480)
Q Consensus 420 -----------~~~~~~--~~~~~i~~a~~~--------------l~~~g~i~~GD~VVvv~G~p~~ 459 (480)
+.+++. ...+.+..+++. +.+.|++..|+.||.+.|...|
T Consensus 88 ~tH~lsg~eR~is~kfgG~~p~eiiA~tLR~fgqG~KV~vEi~lMAaDaGlIp~~eeVIaiGGT~~G 154 (181)
T pfam08981 88 GTHALSGLERAISNKFGGISPVEIIAETLRMLGQGVKVCVEIALMAADAGLIPVGEEVIAIGGTGRG 154 (181)
T ss_pred ECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
T ss_conf 5031344235411004797989999999997289747999998875067877889838997766677
No 26
>TIGR01588 citE citrate lyase, beta subunit; InterPro: IPR006475 This group of sequences represent the beta subunit of the holoenzyme citrate lyase (4.1.3.6 from EC) composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The group contains an experimentally characterised member from Leuconostoc mesenteroides . The group contains sequences from a wide range of Gram-positive bacteria. For Gram-negative bacteria, it appears that only the sequences from gamma proteobacteria are present.; GO: 0008816 citryl-CoA lyase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=96.17 E-value=0.016 Score=38.25 Aligned_cols=152 Identities=23% Similarity=0.241 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHHHEEE--
Q ss_conf 6556778998873488532505855773479999986200---------34335553278566311788875331247--
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ---------NKIGLMSKIEKPRAIEYASEIIQLSDAVM-- 240 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~---------~~~~IiaKIE~~~al~nl~eI~~~sDgim-- 240 (480)
|+.-.+||+--++. ++|.|=|+-+.+++||.++-+++.+ -.+++.|=||+..|+-|-.||..+|+=+|
T Consensus 71 tpFG~~Dl~AvVkA-gvdvvRLPKtdt~~~i~~le~~i~~iE~E~Gr~vG~T~lMAAIESAlGv~Na~EIA~AS~RL~GI 149 (288)
T TIGR01588 71 TPFGLEDLKAVVKA-GVDVVRLPKTDTAEDIHELEKLIEEIEKEIGREVGETKLMAAIESALGVVNAVEIARASKRLMGI 149 (288)
T ss_pred CHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHCCCHHHHHH
T ss_conf 85458889988753-88656668989988999999899999986088857615888998863304578884313789998
Q ss_pred -EECC----CCCHHCC--HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf -5222----2002158--76736899999999851398399805767888828898403477899998519968998144
Q gi|254780442|r 241 -VARG----DLGVEMA--LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAE 313 (480)
Q Consensus 241 -iaRG----DLg~e~~--~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~E 313 (480)
++== ||+.+=+ =.+|+.+-..|+..+|.+|--++= ..-|=+||--==+.|++=|-|.=+||=.||
T Consensus 150 AL~AeDYvtdmkT~R~p~G~ELfyAR~~i~lAAR~AgI~AFD---tVysdvNneeGF~~E~~Lik~LGFDGKSLi----- 221 (288)
T TIGR01588 150 ALGAEDYVTDMKTSRSPDGTELFYAREAILLAARAAGIAAFD---TVYSDVNNEEGFLKEAQLIKQLGFDGKSLI----- 221 (288)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EEEECCCCHHHHHHHHHHHHHCCCCCCCCC-----
T ss_conf 830554432277667876328999999999998652614544---554047662357999999986389873125-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 4354465899999999887630101
Q gi|254780442|r 314 TASGSYPVDAVRTMSLVASSAERDS 338 (480)
Q Consensus 314 Ta~G~yP~~~v~~~~~i~~~~E~~~ 338 (480)
+|-|. +.+++|=.-|||..
T Consensus 222 -----nPrQi-~llh~vY~PT~KEi 240 (288)
T TIGR01588 222 -----NPRQI-ELLHKVYAPTEKEI 240 (288)
T ss_pred -----CHHHH-HHHHHHCCCCHHHH
T ss_conf -----62678-87653148857788
No 27
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.15 Score=31.08 Aligned_cols=308 Identities=16% Similarity=0.222 Sum_probs=153.1
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCH-----HHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEE--EECCCCCEEECCCC
Q ss_conf 9999999997399789998888898-----9999999999999997499279999878986788--65489818965899
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSH-----DKMCELIKKIRAVELRSRRPIGILIDLQGPKFRV--GKFANSKVDLTEGQ 91 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~-----e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~--g~~~~~~i~l~~G~ 91 (480)
+..+|+.|++.|..++ =+||-.+ +....+-.-.+.+++.++++|...-|.-|++.+- ..++++.|-|-++
T Consensus 39 ~lpTI~~l~~~gakvv--i~SHlGRPkg~~~~~~SL~pva~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~I~LLEN- 115 (391)
T PRK00073 39 ALPTIKYLLEKGAKVI--LLSHLGRPKGEGDEEFSLAPVAKRLSELLGKPVKFVDDCIGEEAREAIAALKDGEVLLLEN- 115 (391)
T ss_pred HHHHHHHHHHCCCEEE--EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCEEEEEC-
T ss_conf 8999999997899899--9936889999989656879999999998611704046778878999997178997998700-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99995324556444221266442221133652674068422102344541124551388087114564467854455567
Q gi|254780442|r 92 IFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQAL 171 (480)
Q Consensus 92 ~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~l 171 (480)
++|...+. -|.++|.+.+..--.+|++|..= + .-|+.-++-+..--+|.
T Consensus 116 -~RF~~~E~--------~nd~~fak~La~l~DiyVNDAF~---~------------------sHR~haS~~gi~~~lps- 164 (391)
T PRK00073 116 -VRFNKGEE--------KNDPELAKKLASLGDVFVNDAFG---T------------------AHRAHASTVGIAKFLPA- 164 (391)
T ss_pred -CCCCCCCC--------CCCHHHHHHHHHHCCEEEECCHH---H------------------HHHCCCCCCCHHHHCHH-
T ss_conf -03566544--------38999999987548899844304---6------------------56426520041120411-
Q ss_pred CHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC-C--CEEE--EEECCHHHHHHHHHHHHHHHEEEEECC--
Q ss_conf 65567789988734885325058557734799999862003-4--3355--532785663117888753312475222--
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN-K--IGLM--SKIEKPRAIEYASEIIQLSDAVMVARG-- 244 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~-~--~~Ii--aKIE~~~al~nl~eI~~~sDgimiaRG-- 244 (480)
+ .+..+ .+.+..+.+.+... + +-|+ |||+++-.+ ++..++.+|.|++.=|
T Consensus 165 ---------~---------aG~l~---ekEi~~L~~~l~~p~~P~~aIiGGaKisdKi~~--i~~l~~k~D~iiigG~ma 221 (391)
T PRK00073 165 ---------A---------AGFLM---EKELDALGKALENPERPFVAILGGAKVSDKIGV--LENLLKKVDKLIIGGGMA 221 (391)
T ss_pred ---------H---------HHHHH---HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH--HHHHHHHCCEEEECCHHH
T ss_conf ---------2---------01899---999999998743888872899827858878999--999998588888772899
Q ss_pred -----CCCHHCC----HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf -----2002158----7673689999999985139839980576788882889840347789999851996899814443
Q gi|254780442|r 245 -----DLGVEMA----LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETA 315 (480)
Q Consensus 245 -----DLg~e~~----~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa 315 (480)
-.|.+++ -++.-..-++|+.+|.+.++.+++-+...-+=- ....++.++.++.+ +-++ ...|-
T Consensus 222 ntfl~a~G~~IG~sl~E~~~i~~a~~il~~a~~~~~~I~lP~D~~~~~~-~~~~~~~~~~~~~~-i~~~--~~i~D---- 293 (391)
T PRK00073 222 NTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKE-FSADAEATVVPVDE-IPDD--WMILD---- 293 (391)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEC-CCCCCCEEEEECCC-CCCC--CEEEE----
T ss_conf 9999983984786545667899999999998743882766504776202-47887526866345-6766--67987----
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 54465899999999887630101244444432038788887899999999861047868999708837999998418888
Q gi|254780442|r 316 SGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKL 395 (480)
Q Consensus 316 ~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~ 395 (480)
+| -++++...+++.+++. ..|.-.-..-+..+-...+.+++.+..+ .++..|+ --|.|+..+.++...-
T Consensus 294 IG---~~Ti~~~~~~I~~akt-I~wNGP~GvfE~~~F~~GT~~i~~aia~----~~~~siv---GGGdT~aai~~~g~~~ 362 (391)
T PRK00073 294 IG---PKTIELFAEIIKDAKT-IVWNGPMGVFEFENFAKGTKAVAKAIAE----STAFSIA---GGGDTAAAVEKLGLAD 362 (391)
T ss_pred CC---HHHHHHHHHHHHHCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHH----CCCEEEE---CCCHHHHHHHHCCCCC
T ss_conf 17---8999999999866898-9997881543476241799999999986----7997998---7728999999749877
Q ss_pred CEEEEEC
Q ss_conf 6999929
Q gi|254780442|r 396 EIIALSP 402 (480)
Q Consensus 396 pIiaiT~ 402 (480)
.+--+|.
T Consensus 363 ~~~hvST 369 (391)
T PRK00073 363 KFSHIST 369 (391)
T ss_pred CCCEEEC
T ss_conf 9827927
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=95.80 E-value=0.12 Score=31.73 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHHHEEE
Q ss_conf 56778998873488532505855773479999986200-------------34335553278566311788875331247
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ-------------NKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~-------------~~~~IiaKIE~~~al~nl~eI~~~sDgim 240 (480)
.-..+|.-+...+++ .|.+.||.+.+++.++|+++.+ .++++-.-||+|.++-..|++.+.+|.+=
T Consensus 372 ~QlrAilra~~~g~l-~IM~PmVs~~~E~~~~k~~~~~~~~el~~~g~~~~~~i~iGiMiEvPsaa~~~d~la~~vDF~S 450 (575)
T PRK11177 372 DQLRAILRASAFGKL-RIMFPMIISVEEVRELKKEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEVDFFS 450 (575)
T ss_pred HHHHHHHHHHCCCCC-EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCEEE
T ss_conf 999999986354885-6997346762789999999999999999739987778628999962489984999997488889
Q ss_pred EECCCCC-----HHCC-----------HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 5222200-----2158-----------76736899999999851398399805767888828898403477899998519
Q gi|254780442|r 241 VARGDLG-----VEMA-----------LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 241 iaRGDLg-----~e~~-----------~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG 304 (480)
|.--||- ++=. ..-|-..-+.++..|+++|+||=+..+|-- .|. -+.=.+-.|
T Consensus 451 IGTNDLtQy~lA~DR~n~~v~~ly~~~hPavLr~i~~vi~~a~~~g~~v~iCGEmA~----dp~-------~~~lLlglG 519 (575)
T PRK11177 451 IGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG----DER-------ATLLLLGMG 519 (575)
T ss_pred ECCCHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC----CHH-------HHHHHHHCC
T ss_conf 645389899998367974545334877889999999999999985998997668656----975-------799999779
Q ss_pred CCEEEEC
Q ss_conf 9689981
Q gi|254780442|r 305 ADAIMLS 311 (480)
Q Consensus 305 ~D~imLs 311 (480)
.|-+=.|
T Consensus 520 ~~~lSm~ 526 (575)
T PRK11177 520 LDEFSMS 526 (575)
T ss_pred CCEEEEC
T ss_conf 9838688
No 29
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=95.56 E-value=0.042 Score=35.17 Aligned_cols=253 Identities=21% Similarity=0.257 Sum_probs=137.1
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC--------------------------CEEEEEE--CCCC---EEE
Q ss_conf 73997899988888989999999999999997499--------------------------2799998--7898---678
Q gi|254780442|r 28 EEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR--------------------------PIGILID--LQGP---KFR 76 (480)
Q Consensus 28 ~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~--------------------------~i~Il~D--l~Gp---kiR 76 (480)
..|.=|.-=|| +.|+.-|.++++|+++.-.=. -++|--| ..|| |+.
T Consensus 57 ~GGiGVIH~N~---~~E~Qae~V~~VKr~e~g~i~redp~t~~P~~tv~~~~~l~~~~gisG~PVv~~G~~~g~ktGKLv 133 (476)
T TIGR01302 57 EGGIGVIHRNM---SIERQAEEVKRVKRAENGIISREDPVTISPETTVEDVLELMERKGISGIPVVEDGKDGGPKTGKLV 133 (476)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHHHHHCCCEEEECCCEEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEE
T ss_conf 49947994479---989999998875232066065148868479851899997322157654578836889897100699
Q ss_pred EEECCC---C--CEEECCCCE--EEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEE-ECCCCCCCCEEEEEEC
Q ss_conf 865489---8--189658999--9995324556444221266442221133652674068422-1023445411245513
Q gi|254780442|r 77 VGKFAN---S--KVDLTEGQI--FTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVK-LCVQEKGIGFIKCKVI 148 (480)
Q Consensus 77 ~g~~~~---~--~i~l~~G~~--v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~-l~V~~~~~~~i~c~V~ 148 (480)
|-+-+ . .+...+++. |.=.. ....+.|..+++--++.+. .+ +.+-++. |-|++.++ +++..|.
T Consensus 134 -GIiT~sqWrD~~f~~~~~~~daV~~~M---T~~~~~iT~~e~i~~e~A~---~~-L~~~r~ekLpvVd~~~-~lVgLiT 204 (476)
T TIGR01302 134 -GIITKSQWRDVRFVKDKGKKDAVSEVM---TPREELITVPEGIDLEEAL---KV-LHKHRIEKLPVVDKDG-ELVGLIT 204 (476)
T ss_pred -EEEECCCEEECCCCCCCCCCCCEEECC---CCCCCCEEECCCCCHHHHH---HH-HHHHCCCEEEEECCCC-CEEEEEE
T ss_conf -998377225411010468833010112---0376434841677789999---99-8860865047882789-8899986
Q ss_pred CCCEEECCCCCCCCCCC---------CC-CCCCC--HHHHHHHHHHHHCCCCCEECC--CCCCCCHHHHHHHHHHHC-CC
Q ss_conf 88087114564467854---------45-55676--556778998873488532505--855773479999986200-34
Q gi|254780442|r 149 AGISIADRKGISFPDTF---------LT-TQALT--QKDREDLHAALQTCEVDWVAL--SFIQSADDLLEIRKIISQ-NK 213 (480)
Q Consensus 149 ~gG~l~s~Kgvnip~~~---------i~-l~~lt--ekD~~di~~a~~~~~vD~ial--SfVr~~~di~~~r~~l~~-~~ 213 (480)
.....+.++ +|+.- +- -.+.+ +.|++=+..-.+ .+||+|.+ |+-+|-.-|..+|+.=+. .+
T Consensus 205 ~~Di~~~~~---~P~A~kd~vG~~GrL~VgAAvg~r~~D~~R~~~L~~-AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~ 280 (476)
T TIGR01302 205 VKDIVKRRE---FPHASKDTVGENGRLIVGAAVGTREDDLERAEALVE-AGVDVIVIDSSHGHSIYVLDSIKKIKKTYPD 280 (476)
T ss_pred HHHHHHHHH---CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCE
T ss_conf 447889863---888778874888608999884689861899999996-5965899816654537899999999863880
Q ss_pred CEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCCHH-------CCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
Q ss_conf 33555-3278566311788875331247522220021-------587673689999999985139839980576788882
Q gi|254780442|r 214 IGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLGVE-------MALELIPGIQKKLIRIARQLGKPVVIATQMLESMVT 285 (480)
Q Consensus 214 ~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg~e-------~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~ 285 (480)
+.||| =|=|.++-+||= --.+||+=|.=|==++. ++..++--+ -+.-..|.+.|.|||=-.=+=.|
T Consensus 281 ~~iiaGNVaT~~~a~~LI--~AgADg~rVGiGpGSICTTr~V~gVGvPQ~TAv-~~Va~~A~~~Gi~VIADGGIr~S--- 354 (476)
T TIGR01302 281 LDIIAGNVATAEQAKALI--DAGADGLRVGIGPGSICTTRIVAGVGVPQITAV-YDVAEYAAQSGIPVIADGGIRYS--- 354 (476)
T ss_pred EEEEECCCCCHHHHHHHH--HCCCCEEEECCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHCCCEEEECCCCCCH---
T ss_conf 579943441178898898--528887898368898110015651276268899-99999997279909983775625---
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 88984034778999985199689981
Q gi|254780442|r 286 SPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 286 ~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
-||+=|+-=||||+||.
T Consensus 355 ---------GDivKAlAaGA~aVMlG 371 (476)
T TIGR01302 355 ---------GDIVKALAAGADAVMLG 371 (476)
T ss_pred ---------HHHHHHHHHCCCEEHHC
T ss_conf ---------58999998167722023
No 30
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=95.54 E-value=0.24 Score=29.57 Aligned_cols=124 Identities=25% Similarity=0.344 Sum_probs=95.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHHH-HHEEEEECCCCC-------------H
Q ss_conf 2505855773479999986200-------343355532785663117888753-312475222200-------------2
Q gi|254780442|r 190 WVALSFIQSADDLLEIRKIISQ-------NKIGLMSKIEKPRAIEYASEIIQL-SDAVMVARGDLG-------------V 248 (480)
Q Consensus 190 ~ialSfVr~~~di~~~r~~l~~-------~~~~IiaKIE~~~al~nl~eI~~~-sDgimiaRGDLg-------------~ 248 (480)
+|.+.|||+.++++.+++++.+ ++.+|+-=+|.|..+-=+|++++. .||.=|.=-||. .
T Consensus 724 ~vMiPFvRT~~E~~rv~~im~~~GL~~g~nGl~~~vM~E~PsnvlLAd~f~~~GfDGFSiGSNDLTQLTLgvDRDSelVA 803 (877)
T TIGR01418 724 EVMIPFVRTPEEGKRVLEIMAEEGLKRGKNGLEVYVMCEVPSNVLLADEFAKLGFDGFSIGSNDLTQLTLGVDRDSELVA 803 (877)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCHHHH
T ss_conf 11357548889999999999972888477855799988356899999989850877156575168776642010431433
Q ss_pred HCC--H---HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCC-HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 158--7---67368999999998513983998057678888288984-03477899998519968998144435446589
Q gi|254780442|r 249 EMA--L---ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPT-RAEVSDVATAVFEEADAIMLSAETASGSYPVD 322 (480)
Q Consensus 249 e~~--~---e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PT-RaEv~Dvanav~dG~D~imLs~ETa~G~yP~~ 322 (480)
+++ - +-|=-.=++.|+.|+++||-|=+..|= |+ --|+.+- .|..|.|.|=|. |--
T Consensus 804 ~lGYFDErn~AVL~li~~~I~aAk~~G~~vgICGQA---------PSDyPe~vef--LVe~GIDSiSlN--------PDa 864 (877)
T TIGR01418 804 HLGYFDERNPAVLRLIEMAIKAAKEHGKKVGICGQA---------PSDYPEVVEF--LVEEGIDSISLN--------PDA 864 (877)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC---------CCCHHHHHHH--HHHCCCCEEEEC--------CCC
T ss_conf 037775768799999999999998739969870688---------8873899999--985498769855--------401
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999887
Q gi|254780442|r 323 AVRTMSLVAS 332 (480)
Q Consensus 323 ~v~~~~~i~~ 332 (480)
++++.+.+++
T Consensus 865 V~~t~~~VA~ 874 (877)
T TIGR01418 865 VLKTRLQVAE 874 (877)
T ss_pred CHHHHHHHHH
T ss_conf 0889999976
No 31
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=95.26 E-value=0.018 Score=37.94 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHH-----------------------------CCCCEEEEEECCHHHH
Q ss_conf 77899887348853250585577347999998620-----------------------------0343355532785663
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIIS-----------------------------QNKIGLMSKIEKPRAI 226 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~-----------------------------~~~~~IiaKIE~~~al 226 (480)
|+-++.|+.. +-+..|+|++.=+.+=+-.. ++.+=+.--|||++||
T Consensus 78 K~lLDIGAQT-----LLvPmi~~aeqA~~~V~A~rYPP~GiRGVGSALARASrwNrIp~Ylq~AdeeiClLlQVEtr~al 152 (249)
T TIGR02311 78 KQLLDIGAQT-----LLVPMIETAEQAEAAVKATRYPPKGIRGVGSALARASRWNRIPDYLQQADEEICLLLQVETREAL 152 (249)
T ss_pred EHHHHHHHHH-----HHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHHHHHHHHHHH
T ss_conf 0132234566-----43103037789999998506951951340078776322176125760521320232326579988
Q ss_pred HHHHHHHHH--HHEEEEECCCCCHHCCH------HHHHHHHHHHHHHHHHCCCEE
Q ss_conf 117888753--31247522220021587------673689999999985139839
Q gi|254780442|r 227 EYASEIIQL--SDAVMVARGDLGVEMAL------ELIPGIQKKLIRIARQLGKPV 273 (480)
Q Consensus 227 ~nl~eI~~~--sDgimiaRGDLg~e~~~------e~vp~~Qk~ii~~~~~~~kpv 273 (480)
+||+||..+ .|||.|.=.||+..+|+ .+|-.+=..-|.+-+.+||++
T Consensus 153 ~NL~~Ia~VeGVDGVFiGPADLaasmGH~GnPsHPEV~~AI~~Ai~~i~a~gKAa 207 (249)
T TIGR02311 153 ENLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQDAIDDAIERIKAAGKAA 207 (249)
T ss_pred HHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6215775017866247571244340156888696158999999999998548986
No 32
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=95.21 E-value=0.25 Score=29.46 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHH
Q ss_conf 5567655677899887-3488532505855773479999986200-------------3433555327856631178887
Q gi|254780442|r 168 TQALTQKDREDLHAAL-QTCEVDWVALSFIQSADDLLEIRKIISQ-------------NKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 168 l~~ltekD~~di~~a~-~~~~vD~ialSfVr~~~di~~~r~~l~~-------------~~~~IiaKIE~~~al~nl~eI~ 233 (480)
-|.+-..-..+|.-|. ..+++ .|.+.||.+.+++.++|+++.+ ..+++-.-||.|.++-.+|++.
T Consensus 531 ~p~lf~~QlrAllRAsa~~g~l-~IM~PMVs~v~E~~~ar~~l~~~~~el~~~~~~~~~~~~vGiMiEvPsaa~~~d~la 609 (748)
T PRK11061 531 QPEIFLIQVRAMLRANAATGNL-SILLPMVTSIDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLA 609 (748)
T ss_pred CCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 9286999999999986168980-699818898899999999999999999871387778770899986699998599999
Q ss_pred HHHHEEEEECCCCC-----HHCCH-----------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 53312475222200-----21587-----------673689999999985139839980576788882889840347789
Q gi|254780442|r 234 QLSDAVMVARGDLG-----VEMAL-----------ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297 (480)
Q Consensus 234 ~~sDgimiaRGDLg-----~e~~~-----------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dv 297 (480)
+..|.+=|.--||- ++=.- .-|-..-+++++.|+++||||=+..+|=- .|.-+
T Consensus 610 ~~vDF~SIGTNDLtQY~lAvDR~n~~va~lyd~~hPAvLr~i~~vi~~a~~~g~~VsvCGEmAg----dp~~~------- 678 (748)
T PRK11061 610 KRVDFISVGTNDLTQYLLAVDRNNTRVASVYDSLHPAMLRALKMIADEAEQHGLPVRLCGEMAG----DPMGA------- 678 (748)
T ss_pred HHCCEEEECHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC----CHHHH-------
T ss_conf 7599999871088889989658986888772878889999999999999984995998133356----97579-------
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99985199689981
Q gi|254780442|r 298 ATAVFEEADAIMLS 311 (480)
Q Consensus 298 anav~dG~D~imLs 311 (480)
.=.+--|.|.+=.|
T Consensus 679 ~lL~glG~~~lSm~ 692 (748)
T PRK11061 679 LLLIGLGYRHLSMN 692 (748)
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99996699826567
No 33
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.01 E-value=0.35 Score=28.43 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHCC-CCCEECCC--CCCCCHH---HHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 67655677899887348-85325058--5577347---99999862003433555-327856631178887533124752
Q gi|254780442|r 170 ALTQKDREDLHAALQTC-EVDWVALS--FIQSADD---LLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 170 ~ltekD~~di~~a~~~~-~vD~ialS--fVr~~~d---i~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimia 242 (480)
.+++.|++-+....+.. ..||+.+- +=.+..- ++.+|+.+. +..||| -+-|.++.++|- -..+|+|.|.
T Consensus 93 Gi~~~~~~~i~~l~~~~~~~~~i~iDvAhG~~~~~~~~i~~ik~~~~--~~~iiaGNVaT~e~~~~L~--~~Gad~VkVG 168 (326)
T PRK05458 93 GVKDDEYDFIDQLAAEGLTPEYITIDIAHGHSDSVINMIKHIKKHLP--ETFVIAGNVGTPEAVRELE--NAGADATKVG 168 (326)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEECCCCCHHHHHHHH--HCCCCEEEEC
T ss_conf 79989999999998569997779998056442899999999998789--9839965431899999999--7499999967
Q ss_pred CCCCCHHCCH----HHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 2220021587----6736899999999851-39839980576788882889840347789999851996899814
Q gi|254780442|r 243 RGDLGVEMAL----ELIPGIQKKLIRIARQ-LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 243 RGDLg~e~~~----e~vp~~Qk~ii~~~~~-~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
=|-=++.+-- --+|.+|-.-|..|.+ ..+|+|--.-+-. ..||+-|+--|||+|||.+
T Consensus 169 IG~Gs~CTTR~~tGvG~p~~q~sai~~ca~~~~~~iiaDGGi~~------------~GDi~KAla~GAd~VM~G~ 231 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRT------------HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC------------CCHHHHHHHCCCCEEEECC
T ss_conf 77987520350135477589999999999972797797368587------------4789999864898898671
No 34
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.82 E-value=0.39 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 79999999997399789998888898
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSH 43 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~ 43 (480)
.+.+.++...++|+|..=++|-..++
T Consensus 11 t~~eda~~~~~~gad~iGfif~~~Sp 36 (212)
T PRK01222 11 TTPEDALAAAEAGADAIGFVFYPKSP 36 (212)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 95999999995799989888038999
No 35
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.79 E-value=0.39 Score=28.03 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=82.8
Q ss_pred HHHHHHHHHHH-----HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHH--HCC-CEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 66311788875-----331247522220021587673689999999985--139-8399805767888828898403477
Q gi|254780442|r 224 RAIEYASEIIQ-----LSDAVMVARGDLGVEMALELIPGIQKKLIRIAR--QLG-KPVVIATQMLESMVTSPFPTRAEVS 295 (480)
Q Consensus 224 ~al~nl~eI~~-----~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~--~~~-kpvivATq~leSM~~~p~PTRaEv~ 295 (480)
.|++|++.+++ ..|+++.-+|=+ +.+. ..+ .|.|+--..-.++.....|-..=+.
T Consensus 18 ~gl~d~~~~i~~~~~~g~dai~~~~G~~-----------------~~~~~~~~~~~~li~~ls~~t~~~~~~~~~~~l~~ 80 (235)
T cd00958 18 PGLEDPEETVKLAAEGGADAVALTKGIA-----------------RAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVA 80 (235)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECHHHH-----------------HHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHC
T ss_conf 6645989999999864999999888899-----------------75153215787669996467645788851776651
Q ss_pred HHHHHHHCCCCEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCHHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89999851996899814443544-658999999998876301012444--444320387888878999999998610478
Q gi|254780442|r 296 DVATAVFEEADAIMLSAETASGS-YPVDAVRTMSLVASSAERDSSWLE--MRSLRRIEPNETGADVISSAARQIAETLRL 372 (480)
Q Consensus 296 Dvanav~dG~D~imLs~ETa~G~-yP~~~v~~~~~i~~~~E~~~~~~~--~~~~~~~~~~~~~~~aIa~aav~lA~~l~a 372 (480)
+|-.|+.-|+|||-.. ...|. +--+.++.+.+++++++++-.-.- ..........+...+.|+++| .+|.+++|
T Consensus 81 sVeeAvrlGAdaV~~~--v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aa-Ria~ELGA 157 (235)
T cd00958 81 SVEDAVRLGADAVGVT--VYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAA-RIGAELGA 157 (235)
T ss_pred CHHHHHHCCCCEEEEE--EECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHH-HHHHHHCC
T ss_conf 6999983555679999--86898168999999999999999839978999741687655656689999999-99999789
Q ss_pred CEEE-EECCC-HHHHHHHHHHCCCCCEE
Q ss_conf 6899-97088-37999998418888699
Q gi|254780442|r 373 SAIF-CYTAS-GATGLRAARERPKLEII 398 (480)
Q Consensus 373 ~aIi-v~T~s-G~tA~~iS~~RP~~pIi 398 (480)
+.|= -||.+ ....+.++.. .+||+
T Consensus 158 DiVKv~y~g~~e~f~~vv~~~--~vPVv 183 (235)
T cd00958 158 DIVKTKYTGDAESFKEVVEGC--PVPVV 183 (235)
T ss_pred CEEEECCCCCHHHHHHHHHHC--CCCEE
T ss_conf 989823999989999999708--99899
No 36
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=94.46 E-value=0.46 Score=27.50 Aligned_cols=125 Identities=25% Similarity=0.270 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHCCCCCEECC--CCCCCCHHHHHHHHHHHCC-CCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCC
Q ss_conf 6556778998873488532505--8557734799999862003-433555-32785663117888753312475222200
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVAL--SFIQSADDLLEIRKIISQN-KIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLG 247 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ial--SfVr~~~di~~~r~~l~~~-~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg 247 (480)
++.|++-.+.-++. ++|+|.+ ++-.+..-++.+|.+-... ++.||| -|-|.++.++|-+ ..+|+|-|.=|-=+
T Consensus 221 ~~~~~eRa~~Lv~a-GvDvivIDtAhGhs~~vi~~ik~ik~~~p~~~iIaGNVaT~e~a~~Li~--aGAD~vKVGiGpGS 297 (467)
T pfam00478 221 RDDDLERAEALVEA-GVDVIVIDSAHGHSEYVLEMIKWIKKKYPDLDVIAGNVVTAEAARELID--AGADAVKVGIGPGS 297 (467)
T ss_pred CHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH--HCCCEEEECCCCCC
T ss_conf 86599999999876-9988997344544188999999987407877378510058999999997--07775775566886
Q ss_pred HHCCHH----HHHHHH--HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 215876----736899--9999998513983998057678888288984034778999985199689981
Q gi|254780442|r 248 VEMALE----LIPGIQ--KKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 248 ~e~~~e----~vp~~Q--k~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
+.+.-+ -+|+++ -..-..|++++.|||--.-+=.| .||+-|+--|||+|||.
T Consensus 298 iCTTR~v~GvG~PQ~tAv~~~a~~a~~~~vpiIADGGi~~s------------GDi~KAlaaGAd~VMlG 355 (467)
T pfam00478 298 ICTTREVAGVGRPQLTAVYEVADAARKLGVPVIADGGIRYS------------GDIAKALAAGASAVMLG 355 (467)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCH------------HHHHHHHHCCCCEEEEC
T ss_conf 56564203667750879999999986569879944762330------------48999987289889877
No 37
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.27 Score=29.23 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC-CCEEEEECCHH-----------HHHHHHHHCCCEEE-
Q ss_conf 888789999999986104786899970883799999841888-86999929989-----------99876665393799-
Q gi|254780442|r 353 ETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK-LEIIALSPMIQ-----------TARRLALVWGIHCV- 419 (480)
Q Consensus 353 ~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~-~pIiaiT~~~~-----------t~r~l~L~~GV~p~- 419 (480)
...++..-..|++-|.+++.+-|++.|.||+||++++-.-+. ..++.+|.+.- -.|..-.-+|..-+
T Consensus 9 ~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 9 KENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCHHHHHHHHHCCCEEEE
T ss_conf 21469999999998874486159998436578999998442673599998322655688520589999999970860043
Q ss_pred -----------EECCCC--CHHHHHHHHHHH--------------HHHCCCCCCCCEEEEEEEECCC
Q ss_conf -----------936879--999999999999--------------9988887788779998522278
Q gi|254780442|r 420 -----------VTEDAS--DSDDMVNRACRI--------------VVEQGFGKPGDRIIISAGLPLG 459 (480)
Q Consensus 420 -----------~~~~~~--~~~~~i~~a~~~--------------l~~~g~i~~GD~VVvv~G~p~~ 459 (480)
..+.+. ..-+.+..+++. +.+.|+++....||-+.|...|
T Consensus 89 ~sHalSg~eRsis~kfGG~~p~eiiAetLR~fg~G~KVcvEItiMAaDaGlIp~~eeViAiGGt~~G 155 (186)
T COG1751 89 QSHALSGVERSISRKFGGYSPLEIIAETLRMFGQGVKVCVEITIMAADAGLIPVSEEVIAIGGTERG 155 (186)
T ss_pred EHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCC
T ss_conf 0022200014445532782669999999998447747999999874267876553058996464567
No 38
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=94.33 E-value=0.49 Score=27.29 Aligned_cols=321 Identities=14% Similarity=0.188 Sum_probs=148.5
Q ss_pred CHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE--EEECCCCCEEECCCC
Q ss_conf 9999999997399789998888-----898999999999999999749927999987898678--865489818965899
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSH-----TSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFR--VGKFANSKVDLTEGQ 91 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SH-----g~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR--~g~~~~~~i~l~~G~ 91 (480)
+..+|+.|++.|....-| +|| |..++...+-.-.+.+++.++++|...-|.-||+.+ +..++++.|-|-++=
T Consensus 46 ~lpTI~~l~~~gak~Vvl-~SH~GRP~g~~~~~~SL~pva~~L~~~L~~~V~f~~d~~g~~a~~~i~~l~~G~I~LLENv 124 (419)
T PTZ00005 46 TIPTIKYLLKNGAKSIVL-MSHLGRPDGRRVEKYSLKPVVEELEKLLGKEVKFLSDCVGEEVEKECANPEEGSVILLENL 124 (419)
T ss_pred HHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 999999999879988999-6788899997796658399999999986866645655458899999963888858997115
Q ss_pred EEEEECCCC-CCC---CCCCCCC---CCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCC
Q ss_conf 999953245-564---4422126---644222113365267406842210234454112455138808711456446785
Q gi|254780442|r 92 IFTLDNKDS-LGS---SDRVMLP---HPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDT 164 (480)
Q Consensus 92 ~v~l~~~~~-~~~---~~~i~i~---y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~ 164 (480)
+|...+. .+. .+.+..+ ...|.+.+.+--.+|++|..= +--..--++. |+.++-.
T Consensus 125 --RF~~eEe~~~~~~~~~~~k~~~~~~~~fa~~La~laDvyVnDAF~---~aHR~haS~v-------------gi~~~~~ 186 (419)
T PTZ00005 125 --RFHIEEEGKGVDAEGDKVKADDEEVQAFRNSLTKLGDVYVNDAFG---TAHRAHSSMV-------------GVNLPQK 186 (419)
T ss_pred --CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCC---CCCCCCCCEE-------------CCCCCCC
T ss_conf --525321245543201210268688999999986536798743201---0122456210-------------3156834
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC-C--CEEE--EEECCHHHHHHHHHHHHHHHEE
Q ss_conf 445556765567789988734885325058557734799999862003-4--3355--5327856631178887533124
Q gi|254780442|r 165 FLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN-K--IGLM--SKIEKPRAIEYASEIIQLSDAV 239 (480)
Q Consensus 165 ~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~-~--~~Ii--aKIE~~~al~nl~eI~~~sDgi 239 (480)
+ .-.|=+ +.+..+.+.+... + +-|+ |||+++-.+ ++..++.+|.|
T Consensus 187 -~-aG~l~e--------------------------kEl~~L~~~l~~p~~P~~aIlGGaKisdKi~v--i~~ll~k~D~i 236 (419)
T PTZ00005 187 -V-AGFLMK--------------------------KELEYFAKALENPQRPFLAILGGAKVKDKIQL--IKNLLDKVDEM 236 (419)
T ss_pred -C-CCHHHH--------------------------HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--HHHHHHHCCEE
T ss_conf -1-328999--------------------------99999999964988883899648873427999--99899727869
Q ss_pred EEEC-----------C-CCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH-HHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7522-----------2-200215876736899999999851398399805767888-82889840347789999851996
Q gi|254780442|r 240 MVAR-----------G-DLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESM-VTSPFPTRAEVSDVATAVFEEAD 306 (480)
Q Consensus 240 miaR-----------G-DLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM-~~~p~PTRaEv~Dvanav~dG~D 306 (480)
+|.= | +.|-..--++.-..-+.|+.+|.++++.+++-..+.-+= .++..++|. +++.. .+-++.
T Consensus 237 iigG~mantfl~a~~G~~iG~sl~e~~~~~~~~~i~~~a~~~~~kI~lP~D~vv~~~~~~~~~~~~-~~~~~-~ip~~~- 313 (419)
T PTZ00005 237 IIGGGMAYTFKKVLNNMPIGSSLFDEEGAKIVKEIMEKAKEKNVKILLPVDFVVADKFSNDANIKV-VTDEE-GIPDGW- 313 (419)
T ss_pred EECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCEEE-ECCCC-CCCCCC-
T ss_conf 977279999999966998775543445679999999998863996657568998524577787037-34214-688644-
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
Q ss_conf 89981444354465899999999887630101244444432038788887899999999861047868999708837999
Q gi|254780442|r 307 AIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGL 386 (480)
Q Consensus 307 ~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~ 386 (480)
..|- +| .++++...+++++++. ..|.-.....+..+-..++..++.+..+.+.+ ++-.|+ --|.|+.
T Consensus 314 -~ilD----IG---~~Ti~~~~~~I~~akt-I~wNGP~G~fE~~~F~~GT~~i~~~ia~~~~~-~~~siv---GGGdT~a 380 (419)
T PTZ00005 314 -MGLD----CG---PKSIENFKDVILTAKT-IVWNGPLGVFEFPNFAKGSIEVLDLVVEATKN-GAITII---GGGDTAS 380 (419)
T ss_pred -CCCC----CC---HHHHHHHHHHHHHCCE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEE---ECHHHHH
T ss_conf -0026----57---6679999999855898-99989824455560648999999999975207-998999---2769999
Q ss_pred HHHHHCCCCCEEEEECCH
Q ss_conf 998418888699992998
Q gi|254780442|r 387 RAARERPKLEIIALSPMI 404 (480)
Q Consensus 387 ~iS~~RP~~pIiaiT~~~ 404 (480)
.+.++...-.+--+|.-.
T Consensus 381 ai~~~g~~~~~~hvSTGG 398 (419)
T PTZ00005 381 LAEKTGKANKVSHVSTGG 398 (419)
T ss_pred HHHHCCCCCCCEEECCCH
T ss_conf 999759757820780776
No 39
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.14 E-value=0.54 Score=27.03 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCC--CCCHHHHHHHHHHHC-CCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCCH
Q ss_conf 556778998873488532505855--773479999986200-3433555-327856631178887533124752222002
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSFI--QSADDLLEIRKIISQ-NKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLGV 248 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSfV--r~~~di~~~r~~l~~-~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg~ 248 (480)
+.|.+-.+.-++ .++|++.+--. .+..-++.+|.+-+. .++.||| -|-|.+|.++|- -..+|+|-|.-|-=++
T Consensus 237 ~~~~eRa~~Lv~-aGvDvlvIDtAhGhs~~v~~~ik~ik~~~p~v~vIaGNVaT~~~a~~Li--~aGAD~vkVGiGpGSi 313 (499)
T PTZ00314 237 EEDKERAAALID-AGVDVLVLDSSQGNSIYQIDFIKWIKSTYPHLEVIAGNVVTQDQAKNLI--DAGADGIRIGMGSGSI 313 (499)
T ss_pred CCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH--HCCCCEEEECCCCCCC
T ss_conf 048999999998-6998999816887727899999998852798846764331099999999--7499879975358855
Q ss_pred HCCHH----HHHHHH--HHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 15876----736899--9999998513983998057678888288984034778999985199689981
Q gi|254780442|r 249 EMALE----LIPGIQ--KKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 249 e~~~e----~vp~~Q--k~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
.+--. -+|++. ...-..|++.+.|||--.-+=.| .||+-|+--|||+|||.
T Consensus 314 CTTR~v~GvGvPq~tAv~~~a~~a~~~gvpiIADGGIr~s------------GDi~KAlAaGAd~VMlG 370 (499)
T PTZ00314 314 CTTQEVCAVGRPQATAVYKVARYAHSRGVPCIADGGIRSS------------GDIVKALALGASCVMLG 370 (499)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCH------------HHHHHHHHCCCCEEEEC
T ss_conf 1046434667860567999999864499859914784643------------18999987289878608
No 40
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=94.12 E-value=0.17 Score=30.66 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHH-CCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCC-
Q ss_conf 65567789988734885325058--5577347999998620-03433555-3278566311788875331247522220-
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIIS-QNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDL- 246 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~-~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDL- 246 (480)
++.|++-.+.-++. ++|++.+. +=.|..-++.+|.+-. ..++.||| -|-|.+|.++|- -..+|++-|.=|-=
T Consensus 225 ~~d~~eR~~aLv~A-GvDvlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGNvaT~~~a~~Li--~aGad~ikvGiG~GS 301 (479)
T PRK07807 225 NGDVAAKARALLEA-GVDVLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGNVVTAEGTRDLV--EAGADIVKVGVGPGA 301 (479)
T ss_pred CCCHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH--HCCCCEEECCCCCCC
T ss_conf 84589999999976-998999754576648999999999840898857874320299999999--739997631555783
Q ss_pred --------CHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf --------02158767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 247 --------GVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 247 --------g~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
|+-+| ++.-+ -..-..|+++|.|+|--.-+=.| .||+-|+--|||++||.
T Consensus 302 iCtTr~v~gvG~p--q~tAi-~~~a~~a~~~gvpiIADGGIr~s------------Gdi~KAla~GA~~VMlG 359 (479)
T PRK07807 302 MCTTRMMTGVGRP--QFSAV-LECAAAARELGAHVWADGGVRHP------------RDVALALAAGASNVMIG 359 (479)
T ss_pred CEECCCCCCCCCC--HHHHH-HHHHHHHHHCCCCEEECCCCCCC------------CHHHHHHHCCCCEEEEC
T ss_conf 2434632377886--09999-99999987569978945872534------------67999987289878888
No 41
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.09 E-value=0.55 Score=26.95 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC----CCCCHH-C
Q ss_conf 77899887348853250585577347999998620034335553278566311788875331247522----220021-5
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR----GDLGVE-M 250 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR----GDLg~e-~ 250 (480)
.+.++..+++ ++++|..+|=...+-++.+|+ ..++++.++-+.+..+...+ ...|+|++-= |..|.. .
T Consensus 70 ~~~~~~~~~~-~v~~v~~~~g~p~~~v~~l~~----~g~~v~~~v~s~~~A~~a~~--~GaD~iv~qG~eAGGH~g~~~~ 142 (236)
T cd04730 70 EALLEVALEE-GVPVVSFSFGPPAEVVERLKA----AGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDI 142 (236)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHH----CCCEEEEECCCHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999999976-999999879897899999998----29989995898999999998--1899899977777778898755
Q ss_pred C-HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 8-767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 251 A-LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 251 ~-~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
+ ++-+|.+-+. .+.|+|.|.=+-+. .|++.+.--|+|++++.
T Consensus 143 ~~~~lv~~v~~~-------~~ipviaAGGI~~g------------~~i~aal~lGA~gV~~G 185 (236)
T cd04730 143 GTFALVPEVRDA-------VDIPVIAAGGIADG------------RGIAAALALGADGVQMG 185 (236)
T ss_pred CHHHHHHHHHHH-------HCCCEEEECCCCCH------------HHHHHHHHHCCCEEEEC
T ss_conf 567799999998-------29868965462778------------99999998089799955
No 42
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=93.50 E-value=0.27 Score=29.19 Aligned_cols=113 Identities=15% Similarity=0.227 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHC-----CCCEEEEEECCH-HHHHHHHHHHHH-HHEEEEE--CCCCCHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 73479999986200-----343355532785-663117888753-3124752--22200215876736899999999851
Q gi|254780442|r 198 SADDLLEIRKIISQ-----NKIGLMSKIEKP-RAIEYASEIIQL-SDAVMVA--RGDLGVEMALELIPGIQKKLIRIARQ 268 (480)
Q Consensus 198 ~~~di~~~r~~l~~-----~~~~IiaKIE~~-~al~nl~eI~~~-sDgimia--RGDLg~e~~~e~vp~~Qk~ii~~~~~ 268 (480)
+.+|+..-+.+-.. .+..+=|=|-.. +.++..+.++++ .|.|.|+ -|+ - ..|...++..++
T Consensus 191 t~kDi~k~~~~P~a~~D~~grL~VgAAVG~~~~~~eRa~~Lv~aGvDvivIDtAhGh------s----~~vi~~ik~ik~ 260 (467)
T pfam00478 191 TRKDIEKARDYPNASKDAQGRLLVGAAVGTRDDDLERAEALVEAGVDVIVIDSAHGH------S----EYVLEMIKWIKK 260 (467)
T ss_pred EHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC------C----HHHHHHHHHHHH
T ss_conf 743467742078522265677799998067865999999998769988997344544------1----889999999874
Q ss_pred C--CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC----------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3--983998057678888288984034778999985199689981----------4443544658999999998876
Q gi|254780442|r 269 L--GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS----------AETASGSYPVDAVRTMSLVASS 333 (480)
Q Consensus 269 ~--~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs----------~ETa~G~yP~~~v~~~~~i~~~ 333 (480)
. ..|+| |.+ .-|..-+-|... -|+|+|-.. .-|.+|.=-..+|......+++
T Consensus 261 ~~p~~~iI-aGN---------VaT~e~a~~Li~---aGAD~vKVGiGpGSiCTTR~v~GvG~PQ~tAv~~~a~~a~~ 324 (467)
T pfam00478 261 KYPDLDVI-AGN---------VVTAEAARELID---AGADAVKVGIGPGSICTTREVAGVGRPQLTAVYEVADAARK 324 (467)
T ss_pred CCCCCCEE-EEE---------ECCHHHHHHHHH---HCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 07877378-510---------058999999997---07775775566886565642036677508799999999865
No 43
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.48 E-value=0.69 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=19.2
Q ss_pred HCCHHHHHHHHH-------------HHHHHHHHCCCEEEEEHH
Q ss_conf 158767368999-------------999998513983998057
Q gi|254780442|r 249 EMALELIPGIQK-------------KLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 249 e~~~e~vp~~Qk-------------~ii~~~~~~~kpvivATq 278 (480)
++.++.+|..++ +.--.|+.+|+|+++.+.
T Consensus 393 ~TsPddv~gM~~A~~i~t~~gg~t~h~a~~ar~~~~p~~~g~~ 435 (794)
T PRK06464 393 MTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCG 435 (794)
T ss_pred CCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 7886688898874154684598504899999871898698343
No 44
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=93.42 E-value=0.71 Score=26.14 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHCCCCCEECCC-------CCCCCHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 65567789988734885325058-------557734799999862003433555-3278566311788875331247522
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALS-------FIQSADDLLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialS-------fVr~~~di~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaR 243 (480)
++.|.....-++.+.++|++.+- ++.+...+..+++++.+.++.||| -|-|.+|.+.|- -.-+|+|-|.-
T Consensus 138 ~~~~~~~~~~~Lv~aGvDvlvId~~vvd~aH~~~~~~~l~~~~~~~~~~v~vIaGNVaT~e~a~~Li--~aGADaVKVGI 215 (368)
T PRK08649 138 SPQNAQKLGPTVVEAGADLFVIQGTVVSAEHVSEGGEPLNLKEFIYELDVPVVVGGCVTYTTALHLM--RTGAAGVLVGI 215 (368)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH--HCCCCEEEECC
T ss_conf 2463899999999749988998414754022203203565664312379878973446999999999--77998999456
Q ss_pred CCCCHHCCHH----HHHHHHHHHHHHHHHC-----------CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 2200215876----7368999999998513-----------983998057678888288984034778999985199689
Q gi|254780442|r 244 GDLGVEMALE----LIPGIQKKLIRIARQL-----------GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAI 308 (480)
Q Consensus 244 GDLg~e~~~e----~vp~~Qk~ii~~~~~~-----------~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~i 308 (480)
|-=++.+-=. -+| |-.-|..|-+. +-|||--.-+=.| .||+-|+--|||++
T Consensus 216 GpGSICTTRvVaGvGvP--QltAI~~~a~a~~~y~~~~~g~~VpvIADGGIr~s------------GDi~KAlaaGA~~V 281 (368)
T PRK08649 216 GPGAACTSRGVLGIGVP--MATAIADCAAARRDYLDETGGRYVHVIADGGIVTS------------GDICKAIACGADAV 281 (368)
T ss_pred CCCCCCCCCCEECCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC------------CHHHHHHHCCCCEE
T ss_conf 68877566340125721--69999999999886556526854648956885864------------18999987289989
Q ss_pred EE
Q ss_conf 98
Q gi|254780442|r 309 ML 310 (480)
Q Consensus 309 mL 310 (480)
||
T Consensus 282 Ml 283 (368)
T PRK08649 282 ML 283 (368)
T ss_pred EE
T ss_conf 87
No 45
>PRK02621 consensus
Probab=93.19 E-value=0.43 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHH
Q ss_conf 7789988734885325058--5577347999998620
Q gi|254780442|r 176 REDLHAALQTCEVDWVALS--FIQSADDLLEIRKIIS 210 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~ 210 (480)
.++++..++. ++|-|.+. .+++++-+.++-+..+
T Consensus 86 ~e~~~~ll~~-GadkVii~s~a~~np~~~~~~~~~fG 121 (254)
T PRK02621 86 LEGIKELLRA-GADKVSLNSAAVRDPDLVRQASDRFG 121 (254)
T ss_pred HHHHHHHHHC-CCCEEEECCHHHHCCCHHHHHHHHCC
T ss_conf 7999999974-99989998867647354455687569
No 46
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.10 E-value=0.43 Score=27.71 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHH-----CCCCEEEEEECC-HHHHHHHHHHHHH-HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-
Q ss_conf 7347999998620-----034335553278-5663117888753-3124752222002158767368999999998513-
Q gi|254780442|r 198 SADDLLEIRKIIS-----QNKIGLMSKIEK-PRAIEYASEIIQL-SDAVMVARGDLGVEMALELIPGIQKKLIRIARQL- 269 (480)
Q Consensus 198 ~~~di~~~r~~l~-----~~~~~IiaKIE~-~~al~nl~eI~~~-sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~- 269 (480)
+.+|+...+.+-. ..+..+=|=|-+ ...++..+..+++ +|.+.|+=-. +. ...|...++.+++.
T Consensus 206 t~kDi~k~~~~P~a~~D~~grL~VgAAVg~~~~~~eRa~~Lv~aGvDvlvIDtAh-----Gh---s~~v~~~ik~ik~~~ 277 (499)
T PTZ00314 206 SRSDAVKNRDYPHASKDENKQLLVGAAISTREEDKERAAALIDAGVDVLVLDSSQ-----GN---SIYQIDFIKWIKSTY 277 (499)
T ss_pred ECCHHHHHHHCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCC-----CC---CHHHHHHHHHHHHHC
T ss_conf 3034877533871222013878999994788048999999998699899981688-----77---278999999988527
Q ss_pred -CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC----------CCCCCCCCHHHHHHHHHHHH
Q ss_conf -983998057678888288984034778999985199689981----------44435446589999999988
Q gi|254780442|r 270 -GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS----------AETASGSYPVDAVRTMSLVA 331 (480)
Q Consensus 270 -~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs----------~ETa~G~yP~~~v~~~~~i~ 331 (480)
.-|||. . +.-|+.-+.|... -|+|+|-.. .-|.+|.=...+|....+.+
T Consensus 278 p~v~vIa-G---------NVaT~~~a~~Li~---aGAD~vkVGiGpGSiCTTR~v~GvGvPq~tAv~~~a~~a 337 (499)
T PTZ00314 278 PHLEVIA-G---------NVVTQDQAKNLID---AGADGIRIGMGSGSICTTQEVCAVGRPQATAVYKVARYA 337 (499)
T ss_pred CCCCEEE-E---------EECHHHHHHHHHH---CCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9884676-4---------3310999999997---499879975358855104643466786056799999986
No 47
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.68 E-value=0.35 Score=28.43 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHHHEEEEECCCCCHHC
Q ss_conf 9988734885325058--5577347999998620034335553--2785663117888753312475222200215
Q gi|254780442|r 179 LHAALQTCEVDWVALS--FIQSADDLLEIRKIISQNKIGLMSK--IEKPRAIEYASEIIQLSDAVMVARGDLGVEM 250 (480)
Q Consensus 179 i~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~~~~~IiaK--IE~~~al~nl~eI~~~sDgimiaRGDLg~e~ 250 (480)
+.-.++..++|++.+. +-+...|...+++.- .++.||+- |.+.+-.+.+-+ ..+||+||+||-|.-.+
T Consensus 157 ~a~~~e~aG~~~l~v~~~~~~~~ad~~~I~~~~--~~i~VigNGDI~s~eda~~~~~--~G~DgVMIgRgAL~n~~ 228 (233)
T cd02911 157 LARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS--YGADMVSVARASLPENI 228 (233)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHH--HCCCEEEECHHHCCCCC
T ss_conf 999999839607994320778508999999863--7987998089699999999998--59999997387556852
No 48
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.52 E-value=0.49 Score=27.28 Aligned_cols=143 Identities=15% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHH
Q ss_conf 4564467854455567655677899887348853250585577347999998620034335553278-566311788875
Q gi|254780442|r 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEK-PRAIEYASEIIQ 234 (480)
Q Consensus 156 ~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~-~~al~nl~eI~~ 234 (480)
+-..++|=..-++.+.++.+.. +.++ +++++-.+-. |.--.+-+..+++. +.+..+.+=|-. .+..+.++.+++
T Consensus 30 ~~~l~iPIissnMDtV~~~~mA-~~la-~~Gglgvlhr-~~~~e~~~~~v~~v--k~~~~v~aaig~~~~~~~r~~~l~~ 104 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMA-IAMA-RLGGIGVIHR-NMSIEEQAEEVRKV--KGRLLVGAAVGTREDDKERAEALVE 104 (325)
T ss_pred CCCCCCCEEECCCCCCCCHHHH-HHHH-HCCCEEEEEC-CCCHHHHHHHHHHH--HCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 8144898886788875889999-9999-7799689943-58889999999975--0476999997668628999999997
Q ss_pred H-HHEEEEE--CCCCCHHCCHHHHHHHHHHHHHHHHHC--CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 3-3124752--222002158767368999999998513--9839980576788882889840347789999851996899
Q gi|254780442|r 235 L-SDAVMVA--RGDLGVEMALELIPGIQKKLIRIARQL--GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIM 309 (480)
Q Consensus 235 ~-sDgimia--RGDLg~e~~~e~vp~~Qk~ii~~~~~~--~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~im 309 (480)
+ .|.|.|+ -|+ . ..+...++..++. .+|+| |.++ .|..=+-|. +..|+|+|-
T Consensus 105 ag~d~i~IDvAhG~-------~---~~~~~~ik~ir~~~p~~~Ii-aGNV---------~T~e~a~~L---~~~GaD~vk 161 (325)
T cd00381 105 AGVDVIVIDSAHGH-------S---VYVIEMIKFIKKKYPNVDVI-AGNV---------VTAEAARDL---IDAGADGVK 161 (325)
T ss_pred CCCCEEEEECHHCC-------C---HHHHHHHHHHHHHCCCCCEE-ECCC---------CCHHHHHHH---HHCCCCEEE
T ss_conf 69989998700034-------5---88999999999768997568-6456---------689999999---866998999
Q ss_pred E----------CCCCCCCCCHH-HHHHHH
Q ss_conf 8----------14443544658-999999
Q gi|254780442|r 310 L----------SAETASGSYPV-DAVRTM 327 (480)
Q Consensus 310 L----------s~ETa~G~yP~-~~v~~~ 327 (480)
. ...|.+| ||. .+|...
T Consensus 162 VGiG~GS~CtTr~~tGvG-~Pq~sai~~~ 189 (325)
T cd00381 162 VGIGPGSICTTRIVTGVG-VPQATAVADV 189 (325)
T ss_pred ECCCCCCCCCCCCCCCCC-CCHHHHHHHH
T ss_conf 757577776660101788-7458899999
No 49
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.01 E-value=1.1 Score=24.82 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=81.9
Q ss_pred HHHHHHH----HHHH-HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCC-HHHHHHHH
Q ss_conf 6311788----8753-3124752222002158767368999999998513983998057678888288984-03477899
Q gi|254780442|r 225 AIEYASE----IIQL-SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPT-RAEVSDVA 298 (480)
Q Consensus 225 al~nl~e----I~~~-sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PT-RaEv~Dva 298 (480)
+++|+++ +++. .|+++.-+|=+..--+ ......|.|+--..-.++ .|.|. ..=+++|-
T Consensus 37 gl~d~~~~i~~~~~~g~dai~~~~G~~~~~~~--------------~~~~~~~lil~l~~~t~~--~~~~~~~~~~~sVe 100 (266)
T PRK07226 37 GLVDMRETVNKVAEGGADAVLMHKGLARHGHR--------------GYGRDVGLIVHLSASTSL--SPDPNDKVLVGTVE 100 (266)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECHHHHHHCCC--------------CCCCCCCEEEEECCCCCC--CCCCCHHEEECCHH
T ss_conf 53599999999986399999967677864352--------------215788749994377314--78864010121499
Q ss_pred HHHHCCCCEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99851996899814443544-6589999999988763010124----444443203878888789999999986104786
Q gi|254780442|r 299 TAVFEEADAIMLSAETASGS-YPVDAVRTMSLVASSAERDSSW----LEMRSLRRIEPNETGADVISSAARQIAETLRLS 373 (480)
Q Consensus 299 nav~dG~D~imLs~ETa~G~-yP~~~v~~~~~i~~~~E~~~~~----~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~ 373 (480)
.|+.-|+|||...- ..|. |--+.++.+.+++++++++-.. ...+. ... ......+.|+++| .+|.+|+|+
T Consensus 101 eAvrlGAdaV~~~v--~~Gs~~E~~~l~~l~~l~~ea~~~GlPll~~~yprG-~~~-~~~~d~~~ia~aa-Ria~ELGAD 175 (266)
T PRK07226 101 DAIKLGADAVSVHV--NVGSETEAEMLEDLGRIARECEEWGMPLLAMMYPRG-PKI-KNEYDPEVVAHAA-RVGAELGAD 175 (266)
T ss_pred HHHHCCCCEEEEEE--ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCC-CCCCCHHHHHHHH-HHHHHHCCC
T ss_conf 99855877899985--479983799999999999999985995699973468-877-7787599999999-999996799
Q ss_pred EEEEECCCH--H-HHHHHHHHCCCCCEEEE
Q ss_conf 899970883--7-99999841888869999
Q gi|254780442|r 374 AIFCYTASG--A-TGLRAARERPKLEIIAL 400 (480)
Q Consensus 374 aIiv~T~sG--~-tA~~iS~~RP~~pIiai 400 (480)
.|=+ ..+| . ..+.++.. | +||+.-
T Consensus 176 iVKv-~y~gd~e~f~~vv~~~-~-vPVlia 202 (266)
T PRK07226 176 IIKT-NYTGDPESFREVVEGC-P-VPVVIA 202 (266)
T ss_pred EEEE-CCCCCHHHHHHHHHHC-C-CCEEEE
T ss_conf 8983-5999989999999847-9-878995
No 50
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=91.79 E-value=0.72 Score=26.08 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHC-----CCCEEEEEEC-CHHHHHHHHHHHHH-HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-
Q ss_conf 73479999986200-----3433555327-85663117888753-3124752222002158767368999999998513-
Q gi|254780442|r 198 SADDLLEIRKIISQ-----NKIGLMSKIE-KPRAIEYASEIIQL-SDAVMVARGDLGVEMALELIPGIQKKLIRIARQL- 269 (480)
Q Consensus 198 ~~~di~~~r~~l~~-----~~~~IiaKIE-~~~al~nl~eI~~~-sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~- 269 (480)
+.+|+...+.+-.. .+..+=|=|- +++.++..+..+++ +|.+.|+=-+ -.-+.+ -..|+..++.
T Consensus 196 t~kDi~k~~~~P~A~~D~~grL~VgAAVg~~~~~~eRa~~Lv~AGvDvivIDtAh----Ghs~~v----i~~ik~ik~~~ 267 (486)
T PRK05567 196 TVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVKAGVDVLVVDTAH----GHSEGV----LDRVREIKAKY 267 (486)
T ss_pred EHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCC----CCHHHH----HHHHHHHHHCC
T ss_conf 7667776520885123666888999996268018999999997699889950445----215778----99999997407
Q ss_pred -CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC----------CCCCCCCCHHHHHHHHHH
Q ss_conf -983998057678888288984034778999985199689981----------444354465899999999
Q gi|254780442|r 270 -GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS----------AETASGSYPVDAVRTMSL 329 (480)
Q Consensus 270 -~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs----------~ETa~G~yP~~~v~~~~~ 329 (480)
..|+|. .+ .-|+--+-|.. .-|+|+|... ..|.+|.=-..+|.-...
T Consensus 268 ~~v~via-GN---------v~T~~~a~~L~---~aGaD~vkVGiG~GsiCtTr~v~GvGvPq~tAv~~~a~ 325 (486)
T PRK05567 268 PDVQIIA-GN---------VATAEAARALI---EAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAE 325 (486)
T ss_pred CCCCEEE-EE---------ECHHHHHHHHH---HCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8773687-51---------20199999999---72987699656688665134324778646999999999
No 51
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=91.78 E-value=0.49 Score=27.29 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHCCCCCEECCCCCC--CCHH---HHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCC--HHH
Q ss_conf 734885325058557--7347---99999862003433555-327856631178887533124752222002158--767
Q gi|254780442|r 183 LQTCEVDWVALSFIQ--SADD---LLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMA--LEL 254 (480)
Q Consensus 183 ~~~~~vD~ialSfVr--~~~d---i~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~--~e~ 254 (480)
++ .++|++.+--.. +..- ++.+|+.+. ..+.|+| -|.|.+|.++|-+ ..+|+|-|.=|-=++.+- ..-
T Consensus 251 v~-aGvD~lviD~AhGhs~~v~~~ik~ik~~~~-~~~~i~aGNVaT~~~~~~L~~--aGad~vkVGiGpGSiCtTr~v~g 326 (497)
T PRK07107 251 VE-AGADVLCIDSSDGYSEWQKRTLDYIKEKYG-DTVKVGAGNVVDRDGFLYLAE--AGADFVKVGIGGGSICITREQKG 326 (497)
T ss_pred HH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCHHCHHHHHHHHH--CCCCEEEECCCCCCCCEECCCCC
T ss_conf 98-599999803435352999999999998669-876341452126999999998--08986897115996621130125
Q ss_pred HHHHHHHHHHHHHH--------CC--CEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 36899999999851--------39--83998057678888288984034778999985199689981
Q gi|254780442|r 255 IPGIQKKLIRIARQ--------LG--KPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 255 vp~~Qk~ii~~~~~--------~~--kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
+-.-|-.-|..|-+ .| .|+|--.-+=.| .||+-|+--|||++||.
T Consensus 327 vG~pQ~sAv~~~a~~~~~~~~~~g~~vpiiADGGi~~s------------GDi~KAlaaGA~~VMlG 381 (497)
T PRK07107 327 IGRGQATALIDVAKARDEYFERTGVYIPICSDGGIVHD------------YHMTLALAMGADFIMLG 381 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC------------CHHHHHHHCCCCEEEEC
T ss_conf 67734889999999988877741676328717875655------------45999985389889988
No 52
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.34 E-value=1.2 Score=24.39 Aligned_cols=97 Identities=20% Similarity=0.319 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHH
Q ss_conf 47999998620034335553278566311788875331247522220021587673689999999985139839980576
Q gi|254780442|r 200 DDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQM 279 (480)
Q Consensus 200 ~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~ 279 (480)
++..++++++.+.++.+++=.=..++++-++++ ..|++=||-+|+ ...| +|+.+-+.+||+|++|-|
T Consensus 77 e~~~~L~~~~k~~gI~f~~t~fd~~s~~~l~~l--~~~~~KIaS~d~-~n~~----------Li~~iak~~kpviiStG~ 143 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPFDETAVDFLESL--DVPAYKIASFEI-TDLP----------LIRYVAKTGKPIIMSTGI 143 (327)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHC--CCCEEEECCHHH-CCHH----------HHHHHHCCCCCEEEECCC
T ss_conf 999999999998599799788997999999870--799599894153-6656----------999986648867996888
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHC-CCC--EEEECCCCCCCCCHHH
Q ss_conf 788882889840347789999851-996--8998144435446589
Q gi|254780442|r 280 LESMVTSPFPTRAEVSDVATAVFE-EAD--AIMLSAETASGSYPVD 322 (480)
Q Consensus 280 leSM~~~p~PTRaEv~Dvanav~d-G~D--~imLs~ETa~G~yP~~ 322 (480)
. |-.|+.+..+.+.. |.. ++|-. +-.||..
T Consensus 144 s---------~~~EI~~av~~~~~~~~~~i~llhC----~s~YPt~ 176 (327)
T TIGR03586 144 A---------TLEEIEEAVEAAREAGCKDLVLLKC----TSSYPAP 176 (327)
T ss_pred C---------CHHHHHHHHHHHHHHCCCCEEECCC----CCCCCCC
T ss_conf 7---------5456788888776502557156525----8589989
No 53
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.15 E-value=0.79 Score=25.78 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHCCCCCEECCCCCCC-------CHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHHHEEEEECCCCCH
Q ss_conf 7348853250585577-------34799999862003433555--327856631178887533124752222002
Q gi|254780442|r 183 LQTCEVDWVALSFIQS-------ADDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQLSDAVMVARGDLGV 248 (480)
Q Consensus 183 ~~~~~vD~ialSfVr~-------~~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~sDgimiaRGDLg~ 248 (480)
++..+++++.+ +-|+ .-|-+.++++....++.+|+ =|.+.+-.+++-+.- .+||+||+||-|+-
T Consensus 147 l~~~G~~~ltv-H~Rt~~q~~~~~a~~e~i~~~~~~~~ipvi~NGdI~s~~d~~~~~~~t-g~dgvMigRgal~n 219 (231)
T cd02801 147 LEDAGASALTV-HGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT-GVDGVMIGRGALGN 219 (231)
T ss_pred HHHCCCCEEEE-ECCCHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-CCCEEEECHHHHHC
T ss_conf 99769989998-356144146776226999999865997799838909999999999850-99999987888769
No 54
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=91.14 E-value=1.3 Score=24.19 Aligned_cols=100 Identities=21% Similarity=0.365 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 73479999986200343355532785663117888753312475222200215876736899999999851398399805
Q gi|254780442|r 198 SADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 198 ~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
+.++..++++++.+.++..++=+=..++++-++++ ..|.+=||=+|+ ...| +|+.+.+.+||+|+.|
T Consensus 54 s~~~~~~l~~~~kk~gi~f~~t~fd~~s~~~l~~l--~~~~~KIaS~d~------~n~~-----Li~~i~k~~kpiiiST 120 (240)
T pfam03102 54 PEEWHKELFEYCKEKGIEFFSTPFDLESVDFLESL--GVPAYKIASGEI------TNLP-----LLRYIAKTGKPVILST 120 (240)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHC--CCCEEEECCCCC------CCHH-----HHHHHHHCCCCEEEEC
T ss_conf 99999999999998299689898989999988755--888699898864------6589-----9999997399689957
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHC-CC-C-EEEECCCCCCCCCHHHH
Q ss_conf 76788882889840347789999851-99-6-89981444354465899
Q gi|254780442|r 278 QMLESMVTSPFPTRAEVSDVATAVFE-EA-D-AIMLSAETASGSYPVDA 323 (480)
Q Consensus 278 q~leSM~~~p~PTRaEv~Dvanav~d-G~-D-~imLs~ETa~G~yP~~~ 323 (480)
-|. |..|+....+.+.. +. + ++|-. +-.||..-
T Consensus 121 G~s---------~~~eI~~~i~~~~~~~~~~i~llhC----vS~YPt~~ 156 (240)
T pfam03102 121 GMA---------TLEEIEEAVETLREAGNEDITLLHC----TSEYPAPF 156 (240)
T ss_pred CCC---------CHHHHHHHHHHHHHCCCCCCEEEEE----CCCCCCCH
T ss_conf 988---------8999999999999634567768665----88899974
No 55
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=91.09 E-value=0.64 Score=26.47 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=40.2
Q ss_pred HHHHHHHCCCCCEECCCCCCC-------CHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHHHEEEEECCCCCH
Q ss_conf 899887348853250585577-------34799999862003433555--327856631178887533124752222002
Q gi|254780442|r 178 DLHAALQTCEVDWVALSFIQS-------ADDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQLSDAVMVARGDLGV 248 (480)
Q Consensus 178 di~~a~~~~~vD~ialSfVr~-------~~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~sDgimiaRGDLg~ 248 (480)
++...++..+++++++ +-|+ ..|-..++++-..-+++||+ -|-+.+..+..-+ ...+|||||+||-||-
T Consensus 153 ~~~~~~e~aG~~~itv-HgRT~~q~y~g~adw~~i~~vk~~~~iPvi~NGDI~~~~da~~~l~-~tg~dgvMigRgal~n 230 (321)
T PRK10415 153 EIAQLAEDCGIQALTI-HGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLD-YTGADALMIGRAAQGR 230 (321)
T ss_pred HHHHHHHHCCCCEEEE-EHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH-HHCCCEEEECHHHHCC
T ss_conf 9999998569889999-7221344316998779999998547997896589199999999998-6299999975665369
No 56
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=90.76 E-value=1.4 Score=23.95 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH-HHC------CCCEEEEEECCHHHH---------HHHHHHHHHH-
Q ss_conf 56778998873488532505855773479999986-200------343355532785663---------1178887533-
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALSFIQSADDLLEIRKI-ISQ------NKIGLMSKIEKPRAI---------EYASEIIQLS- 236 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~-l~~------~~~~IiaKIE~~~al---------~nl~eI~~~s- 236 (480)
++.++|.-++.++++||| |.-...|-+..=+. +.. -.+..+-|.|...-. .|-|++...-
T Consensus 63 ~~~~eii~~lne~~idYI---FT~Rg~D~~K~Y~tAi~~~~p~vDiDi~l~~k~~~r~~~TklmvSyHt~~sd~m~a~Ld 139 (228)
T PRK01261 63 ESEPEIISALNEMDIDYI---FTYRGVDARKYYETAIDKMPPAVDLDINLIGKLEFRPRNTMLMVSYHTNNSDNMPAILD 139 (228)
T ss_pred CCHHHHHHHHHHCCCCEE---EEECCCCHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 345999998874587489---99527888888888874289706630444333304888747999934896778999999
Q ss_pred -------HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE-
Q ss_conf -------124752222002158767368999999998513983998057678888288984034778999985199689-
Q gi|254780442|r 237 -------DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAI- 308 (480)
Q Consensus 237 -------DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~i- 308 (480)
|-+=||-- --+.++...--++|+..-.+.+||++-- |--+|..-+..+.+ +.|-+
T Consensus 140 ~M~e~n~Di~KVA~~----Y~d~k~Fl~DLq~il~~kk~~~kPi~~i------------PMG~~flRv~s~y~-vSdivY 202 (228)
T PRK01261 140 IMNEKNPDYVKVACN----YNDNKKFVDDLQYILMKKDEKYKPIVFI------------PMGREFLRIFSGYY-VSDIVY 202 (228)
T ss_pred HHHHCCCCEEEEEEC----CCCHHHHHHHHHHHHHHHHHCCCCEEEE------------ECCHHHHHHHHHHH-HHEEEE
T ss_conf 997549985899705----3347899999999999887528935997------------45399999988761-010566
Q ss_pred -EECCCCCCCCCHHHH
Q ss_conf -981444354465899
Q gi|254780442|r 309 -MLSAETASGSYPVDA 323 (480)
Q Consensus 309 -mLs~ETa~G~yP~~~ 323 (480)
+-..|||-|+-|-+-
T Consensus 203 A~y~~~TApGQ~~~d~ 218 (228)
T PRK01261 203 ARYDNETAPGQPKRDY 218 (228)
T ss_pred EECCCCCCCCCCCHHH
T ss_conf 7414777899999799
No 57
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=90.11 E-value=1.4 Score=23.96 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHHHHHHCCCCCEECCCCC--CCC---HHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCCH
Q ss_conf 6778998873488532505855--773---4799999862003433555-327856631178887533124752222002
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALSFI--QSA---DDLLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLGV 248 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialSfV--r~~---~di~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg~ 248 (480)
+++-.+-.++ .++|++.+.-. .+. +-++.+|+... ++.||| -+-|.++.++|- -.-+|||.|.-|-=++
T Consensus 154 ~~era~~Lv~-AGvD~lvID~AhGhs~~~~e~ik~ik~~~p--~v~VIaGNVaT~~~a~~Li--~aGAD~VkVGiGpGsi 228 (404)
T PRK06843 154 TIERVEELVK-AHVDILVIDSAHGHSTRIIELVKTIKNKYP--NLDLIAGNIVTKEAALDLI--NVGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEECCCCCHHHHHHHH--HHCCCEEEECCCCCCC
T ss_conf 8999999997-699999996887521789999999997679--9616630305799999999--8198999956547877
Q ss_pred HCCHHH----HHHHHH--HHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 158767----368999--999998513983998057678888288984034778999985199689981
Q gi|254780442|r 249 EMALEL----IPGIQK--KLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 249 e~~~e~----vp~~Qk--~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
.+--+. +|+++- ..-..|+..+.|||--.-+=.| .||+-|+--|||+|||.
T Consensus 229 CTTr~v~GvGvPq~tAi~d~~~~a~~~~v~IIADGGI~~s------------GDi~KAlA~GAdaVMlG 285 (404)
T PRK06843 229 CTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFS------------GDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC------------CHHHHHHHCCCCEEEEC
T ss_conf 2566545868748999999999960579978836874653------------27999997189888867
No 58
>PRK06381 threonine synthase; Validated
Probab=90.08 E-value=1.6 Score=23.54 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=17.2
Q ss_pred HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf 33124752222002158767368999999998513983998057
Q gi|254780442|r 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 235 ~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq 278 (480)
.-|.+.+.=|.=|.=.+.-+-+ |...........|.+++.|
T Consensus 166 ~pD~vv~~vG~Gg~~~Gi~~g~---~~~~~~~~~~~~prii~ve 206 (319)
T PRK06381 166 VPDYVAVPVGNGTTLAGIYYGF---RRMYDMGIIDRMPRMVGAS 206 (319)
T ss_pred CCCEEEEECCCCHHHHHHHHHH---HHHHHCCCCCCCCEEEEEC
T ss_conf 9998999789857799999999---9887524467765179862
No 59
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=89.34 E-value=0.95 Score=25.20 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=63.1
Q ss_pred HHHHHCCCCCEECC---------CCCCCCHHHHHHHHHHHCC-CCEEEE--EECCHHHHHHHHHHHHHHHEEEEECCCCC
Q ss_conf 98873488532505---------8557734799999862003-433555--32785663117888753312475222200
Q gi|254780442|r 180 HAALQTCEVDWVAL---------SFIQSADDLLEIRKIISQN-KIGLMS--KIEKPRAIEYASEIIQLSDAVMVARGDLG 247 (480)
Q Consensus 180 ~~a~~~~~vD~ial---------SfVr~~~di~~~r~~l~~~-~~~Iia--KIE~~~al~nl~eI~~~sDgimiaRGDLg 247 (480)
+.+ +..|+..|+| +=--+=+-|..+|.-+++. .++||+ =|.++++=+..=+ -..+|||||+||=||
T Consensus 166 ~~a-~~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~vKq~v~~~GeiPVigNGDi~~~~~A~~~L~-~TG~DGvm~gRG~lG 243 (336)
T TIGR00737 166 RIA-EDAGAQAVTLHGRTRAQGYEGEANWDIIARVKQAVRKEGEIPVIGNGDIFSPEDAKAMLE-TTGADGVMIGRGALG 243 (336)
T ss_pred HHH-HHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH-HCCCCEEEEECHHCC
T ss_conf 999-872400021110000015788760689999999971687533222774246789999986-378868985002227
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 21587673689999999985139839980576788882889840347789999
Q gi|254780442|r 248 VEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 (480)
Q Consensus 248 ~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvana 300 (480)
.=- +-++| .|.|++=...+.||-+|..++.-.
T Consensus 244 ~PW-------l~~~i--------------~~yL~tG~~~~~p~~~ek~~~~~~ 275 (336)
T TIGR00737 244 NPW-------LFKQI--------------EQYLTTGKYKPPPTLAEKLDAILR 275 (336)
T ss_pred CCH-------HHHHH--------------HHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 875-------89999--------------999726877889888999999999
No 60
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=89.12 E-value=1.9 Score=23.04 Aligned_cols=204 Identities=17% Similarity=0.214 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC-------------------CCCEEEEEECCHHHHHHHHHHH
Q ss_conf 556778998873488532505855773479999986200-------------------3433555327856631178887
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ-------------------NKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~-------------------~~~~IiaKIE~~~al~nl~eI~ 233 (480)
+..++-+..|++. ++|++- -..+|+..++++=+- .....+-.|.+++.++..-+..
T Consensus 13 ~~~K~~vt~AlEs-Gvd~vv----v~~~d~~~v~~Lg~i~v~~~~~d~~~~~~~~~~~~~~~~~v~I~~~~~ee~A~~~~ 87 (347)
T PRK02290 13 EERKEVVTTALES-GVDAVV----VDEADVERVRELGRIKVAADSSDADIVLLADLKGGEDGVYVEITDKADEEFAAEAA 87 (347)
T ss_pred HHHHHHHHHHHHC-CCCEEE----ECHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf 7789999999971-887899----89889788886177179862775301233214676179999978889999999875
Q ss_pred HHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 53312475222200215876736899999999851398399805767888828898403477899998519968998144
Q gi|254780442|r 234 QLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAE 313 (480)
Q Consensus 234 ~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~E 313 (480)
...|-+++.=.|- --||+|.+ |..+...+.-++..-. +-.|+.-.+.+...|+|||+|..+
T Consensus 88 ~~~~~vvv~~~dW-~iIPlENl-------IA~~~g~~~~i~a~v~-----------~~~eA~~a~~~LE~GvdgV~l~~~ 148 (347)
T PRK02290 88 ARADYVILEGRDW-TIIPLENL-------IADLQGASGKIVAGVA-----------DAEEAELALETLEKGVDGVLLDPD 148 (347)
T ss_pred CCCCEEEEECCCC-CCCCHHHH-------HHHHCCCCCEEEEEEC-----------CHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 4598899976887-28258999-------9985589965999909-----------999999999887128777998899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC-----------------CCCC-------CHHHHHHHHHH-----
Q ss_conf 435446589999999988763010124444443203-----------------8788-------88789999999-----
Q gi|254780442|r 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRI-----------------EPNE-------TGADVISSAAR----- 364 (480)
Q Consensus 314 Ta~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~-----------------~~~~-------~~~~aIa~aav----- 364 (480)
. |.+ ++.+...+.+.+.............. .+.. +-.=.+.++-.
T Consensus 149 d-----~~e-i~~~~~~~~~~~~~~l~L~~a~Vt~V~~~G~GdRvCVDt~sll~~gEGmLVGS~s~~~fLVhsEt~~s~y 222 (347)
T PRK02290 149 D-----PNE-LKAIVAAVEKLARESLELVEAEVTAVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHSETEENPY 222 (347)
T ss_pred C-----HHH-HHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEEEEHHCCCCCCEEEEEECCCEEEEEEECCCCCCC
T ss_conf 9-----899-9999999875257752106999999987574307999701127899738961036617999715456898
Q ss_pred --HHHHCCCCCEEEEECCC-HHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf --98610478689997088-3799999841888869999299899
Q gi|254780442|r 365 --QIAETLRLSAIFCYTAS-GATGLRAARERPKLEIIALSPMIQT 406 (480)
Q Consensus 365 --~lA~~l~a~aIiv~T~s-G~tA~~iS~~RP~~pIiaiT~~~~t 406 (480)
.--..+||-+.=.|+.. |...+++|-+++.-.++++..+.++
T Consensus 223 v~~RPFRVNAGavHaYv~~p~g~T~YLSEL~sG~~Vl~v~~~G~t 267 (347)
T PRK02290 223 VAPRPFRVNAGAVHAYVRVPGGKTRYLSELKAGDEVLIVDADGRT 267 (347)
T ss_pred CCCCCCEECCCCHHEEEECCCCCEEEHHHCCCCCEEEEEECCCCE
T ss_conf 888772132762116897489826201340489879999799987
No 61
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=89.09 E-value=1.9 Score=23.02 Aligned_cols=98 Identities=18% Similarity=0.380 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf 34799999862003433555327856631178887533124752222002158767368999999998513983998057
Q gi|254780442|r 199 ADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 199 ~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq 278 (480)
.++..++++++.+.++..++=+=..++++-+.++ ..|.+=||-+|+. ..| +|+.+-+.+||+|+.|-
T Consensus 75 ~~~~~~L~~~~~~~gi~~~~s~fd~~s~~~l~~~--~~~~~KIaS~d~~------n~~-----Li~~i~~~~kpiiiStG 141 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLEDL--GVPRFKIPSGEIT------NAP-----LLKKIARFGKPVILSTG 141 (329)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHC--CCCEEEECCCCCC------CHH-----HHHHHHHHCCCEEEECC
T ss_conf 9999999999997299299896989999999864--9997997923105------489-----99999974897899678
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCC-C-C---EEEECCCCCCCCCHHH
Q ss_conf 67888828898403477899998519-9-6---8998144435446589
Q gi|254780442|r 279 MLESMVTSPFPTRAEVSDVATAVFEE-A-D---AIMLSAETASGSYPVD 322 (480)
Q Consensus 279 ~leSM~~~p~PTRaEv~Dvanav~dG-~-D---~imLs~ETa~G~yP~~ 322 (480)
|. |-.|+.+..+.+... . + ++|-. +-.||..
T Consensus 142 ~s---------~~~EI~~av~~~~~~~~~~~~i~llhC----~s~YP~~ 177 (329)
T TIGR03569 142 MA---------TLEEIEAAVGVLRDAGTPDSNITLLHC----TTEYPAP 177 (329)
T ss_pred CC---------HHHHHHHHHHHHHHCCCCCCCEEEEEE----CCCCCCC
T ss_conf 62---------399999999999974886557688643----7889999
No 62
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=88.67 E-value=0.94 Score=25.24 Aligned_cols=90 Identities=19% Similarity=0.330 Sum_probs=46.9
Q ss_pred HHHCCCCCEECCCCCCCC------------------HHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHHHEEEE
Q ss_conf 873488532505855773------------------4799999862003433555--32785663117888753312475
Q gi|254780442|r 182 ALQTCEVDWVALSFIQSA------------------DDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQLSDAVMV 241 (480)
Q Consensus 182 a~~~~~vD~ialSfVr~~------------------~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~sDgimi 241 (480)
.+++.+++++.+ +-|++ +-|.++|+-+ .++.||. -|.+.+.. .+.++..|||||
T Consensus 159 ~~~~aG~~~i~v-H~R~a~l~Glspk~nR~ippl~~~~v~~lk~~~--p~ipvi~NGdI~s~~~~---~~~l~~~DGVMi 232 (333)
T PRK11815 159 TVAEAGCDRFIV-HARKAWLKGLSPKENREIPPLDYDRVYRLKRDF--PHLTIEINGGIKTLEEA---KEHLQHVDGVMI 232 (333)
T ss_pred HHHHCCCCEEEE-EEHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHC--CCCEEEECCCCCCHHHH---HHHHHCCCEEEE
T ss_conf 999759988999-602787726787775058730489999999766--78718845996999999---999855996211
Q ss_pred ECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2222002158767368999999998513983998057678888288984034778999
Q gi|254780442|r 242 ARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 (480)
Q Consensus 242 aRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvan 299 (480)
+||-++--.=+.++ +..+ +|. ..|.|||.|+-+.+-
T Consensus 233 GRga~~nPwif~~i----d~~~-----~g~-------------~~~~~s~~ei~~~~~ 268 (333)
T PRK11815 233 GRAAYHNPYLLAEV----DREL-----FGE-------------PAPVPSREEVLEAML 268 (333)
T ss_pred HHHHHCCCHHHHHH----HHHH-----HCC-------------CCCCCCHHHHHHHHH
T ss_conf 48675599789999----9998-----489-------------999999999999999
No 63
>pfam01959 DHQS 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides.
Probab=88.51 E-value=2 Score=22.75 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=111.0
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHH---------------C--CCCEEEEEECCHHHHHHHHHHHHHHHE
Q ss_conf 77899887348853250585577347999998620---------------0--343355532785663117888753312
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIIS---------------Q--NKIGLMSKIEKPRAIEYASEIIQLSDA 238 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~---------------~--~~~~IiaKIE~~~al~nl~eI~~~sDg 238 (480)
++.+..|++. ++|++-+ ..+|+..+|++-+ . +....+-+|.+++..+..-+..+..|-
T Consensus 14 K~~vt~alEs-G~d~v~v----~~~~~~~v~~Lg~i~vi~~~~~~~~~~~~~g~~v~~~v~i~~~e~e~~a~~~~~~~~~ 88 (343)
T pfam01959 14 KERITTALES-GVDAVLV----DEEDVERVRELGRITVAAFGEDDLETLKESGKEVGAYVEITDKEDEEFAAEAAKEADY 88 (343)
T ss_pred HHHHHHHHHC-CCCEEEE----CHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 7887888871-8868997----9899777664164689812874223442168647999998888999999987533987
Q ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 47522220021587673689999999985139839980576788882889840347789999851996899814443544
Q gi|254780442|r 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGS 318 (480)
Q Consensus 239 imiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~ 318 (480)
+++.=.|-. -||+|.+ |..+...+--++..-. +-.|+.-.+.+...|+|||+|..+.
T Consensus 89 viv~~~DW~-iIPlENl-------IA~~~g~~t~i~a~v~-----------~~~eA~~a~~~LE~GvDgVvl~~~~---- 145 (343)
T pfam01959 89 VIVEGRDWT-IIPLENL-------IARLQGSETKVIAVVK-----------SAEEAKLALETLEKGVDGVLLDPDD---- 145 (343)
T ss_pred EEEECCCCC-EECHHHH-------HHHHCCCCCEEEEEEC-----------CHHHHHHHHHHHCCCCCEEEECCCC----
T ss_conf 999768894-9538999-------8875389955999918-----------9999999998861487689988999----
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHC-----------------CCCC-------CCHHHHHHHHH----HHH---H
Q ss_conf 658999999998876301012444444320-----------------3878-------88878999999----998---6
Q gi|254780442|r 319 YPVDAVRTMSLVASSAERDSSWLEMRSLRR-----------------IEPN-------ETGADVISSAA----RQI---A 367 (480)
Q Consensus 319 yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~-----------------~~~~-------~~~~~aIa~aa----v~l---A 367 (480)
|-+ ++.+...+.+.+............. ..+- .+-.=.+.++= -.+ -
T Consensus 146 -~~e-i~~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDt~sll~~GEGmLVGS~s~~lfLVhsEt~~s~Yv~~RP 223 (343)
T pfam01959 146 -PNE-IKAIVAVVEEKSSESLDLVPATVTEIEPVGMGDRVCVDTCSLMEDGEGMLVGSSSRGLFLVHSETLESPYVASRP 223 (343)
T ss_pred -HHH-HHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEEEEEHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCC
T ss_conf -899-999999985257674146789999998757621699871231789972796013662799981333688878997
Q ss_pred HCCCCCEEEEECCC-HHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 10478689997088-3799999841888869999299899
Q gi|254780442|r 368 ETLRLSAIFCYTAS-GATGLRAARERPKLEIIALSPMIQT 406 (480)
Q Consensus 368 ~~l~a~aIiv~T~s-G~tA~~iS~~RP~~pIiaiT~~~~t 406 (480)
...||-++-+|+.. |...+++|-+++.-.++++..+.++
T Consensus 224 FRVNAGaVHaYv~~p~g~T~YLsEL~sGdeVlvvd~~G~t 263 (343)
T pfam01959 224 FRVNAGAVHAYVRVPGGKTRYLSELKAGDEVLVVDADGRT 263 (343)
T ss_pred EEECCCCEEEEEECCCCCEEEEHHHCCCCEEEEEECCCCE
T ss_conf 2331773057998289937873020589869999789985
No 64
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.46 E-value=2 Score=22.73 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999999999998888
Q gi|254780442|r 427 SDDMVNRACRIVVEQGF 443 (480)
Q Consensus 427 ~~~~i~~a~~~l~~~g~ 443 (480)
..++.+.-.+++.++|+
T Consensus 270 i~~i~~~L~~~l~~~G~ 286 (296)
T cd04740 270 FKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999998399
No 65
>PRK09932 glycerate kinase II; Provisional
Probab=88.11 E-value=1.2 Score=24.34 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 43355532785663117888753312475222200215876736899999999851398399805767
Q gi|254780442|r 213 KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQML 280 (480)
Q Consensus 213 ~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~l 280 (480)
+.++.+=+|--..+-||++-++.+|-|+-.-|-+--+...-|+|. .|.+.|+++++|||.-.--+
T Consensus 262 ~a~l~~G~d~v~~~~~l~~~i~~aDLVITGEG~~D~Qtl~GK~p~---gVa~~A~~~~~Pviai~G~~ 326 (381)
T PRK09932 262 NADIKPGIEIVLNAVNLEQAVQGAALVITGEGRIDSQTAGGKAPL---GVASVAKQFNVPVIGIAGVL 326 (381)
T ss_pred CCEECCHHHHHHHHHCHHHHHCCCCEEEECCCCCCCCCCCCCHHH---HHHHHHHHCCCCEEEEECCC
T ss_conf 979845699999875989884789999989987766688988599---99999998499989996245
No 66
>PRK06260 threonine synthase; Validated
Probab=87.95 E-value=2.2 Score=22.51 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=28.0
Q ss_pred EEEEECCHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-EE
Q ss_conf 999929989998766653---9379993687999999999999999888877887799985-22
Q gi|254780442|r 397 IIALSPMIQTARRLALVW---GIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISA-GL 456 (480)
Q Consensus 397 IiaiT~~~~t~r~l~L~~---GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~-G~ 456 (480)
.+++| +..+.....+++ |+++ .. ....--.++..+.++|.+++++.||++. |.
T Consensus 313 ~v~Vt-D~ei~~A~~~La~~eGi~v---Ep---asA~alAgl~kl~e~G~i~~~~~VV~~lTG~ 369 (400)
T PRK06260 313 AESVS-DEEILAAQRLLARKEGIGV---EP---ASAASVAGLIKLVEMGVIDKDEKVVCVTTGH 369 (400)
T ss_pred EEEEC-HHHHHHHHHHHHHHCCEEE---CC---HHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 99988-9999999999997489067---83---6899999999999739999999799990788
No 67
>TIGR02152 D_ribokin_bact ribokinase; InterPro: IPR011877 This entry describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family. ; GO: 0004747 ribokinase activity, 0006014 D-ribose metabolic process.
Probab=87.73 E-value=2 Score=22.74 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHH-----HCCCCEEEE---EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 58557734799999862-----003433555---3278566311788875331247522220021587673689999999
Q gi|254780442|r 193 LSFIQSADDLLEIRKII-----SQNKIGLMS---KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIR 264 (480)
Q Consensus 193 lSfVr~~~di~~~r~~l-----~~~~~~Iia---KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~ 264 (480)
.+||+.-++...=..++ +++.|-|++ +==+++-+++.++.+..||-++. =.|+|+|=+ ++.++
T Consensus 81 t~~v~~~~~~~TG~A~I~V~~~G~N~I~v~~GAN~~l~~~~~~~~~~~i~~s~~~~~-----QlEiP~etv----~~a~~ 151 (303)
T TIGR02152 81 TEYVKTVKDTPTGTAFIFVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLL-----QLEIPLETV----LEALK 151 (303)
T ss_pred CCCEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEE-----ECCCCHHHH----HHHHH
T ss_conf 021167177776358999837888579880275645798899999987746888997-----237888999----99999
Q ss_pred HHHHCCCEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 9851398399805767888828898403477
Q gi|254780442|r 265 IARQLGKPVVIATQMLESMVTSPFPTRAEVS 295 (480)
Q Consensus 265 ~~~~~~kpvivATq~leSM~~~p~PTRaEv~ 295 (480)
.|+++|++||. ||=|-+....
T Consensus 152 ~a~~~G~~viL----------NPAPA~~~~~ 172 (303)
T TIGR02152 152 IAKKHGVKVIL----------NPAPAQKKLP 172 (303)
T ss_pred HHHHCCCCEEE----------CCCCCCCCCC
T ss_conf 99965898986----------6888887875
No 68
>PRK00830 consensus
Probab=87.29 E-value=2.4 Score=22.24 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=5.5
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999973997
Q gi|254780442|r 21 DVINRLHEEGTD 32 (480)
Q Consensus 21 e~i~~l~~aG~n 32 (480)
+..+..-+.|++
T Consensus 38 ~~ak~~~~~gad 49 (273)
T PRK00830 38 ELAKRYYEDGAD 49 (273)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999987999
No 69
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=86.90 E-value=1.5 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=15.7
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHEEEEECCC
Q ss_conf 433555327856631178887533124752222
Q gi|254780442|r 213 KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGD 245 (480)
Q Consensus 213 ~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGD 245 (480)
.++|.+-+.+++......+ .-+|||=++|=.
T Consensus 535 ~~~V~~N~~~p~da~~a~~--~gadGVGL~RtE 565 (875)
T PRK09279 535 RLKVRANADTPEDAKTARE--FGAEGIGLCRTE 565 (875)
T ss_pred CEEEEECCCCHHHHHHHHH--CCCCEEEECHHH
T ss_conf 2267745899899999997--699838662556
No 70
>pfam02595 Gly_kinase Glycerate kinase family. This is family of Glycerate kinases.
Probab=86.63 E-value=1.4 Score=23.91 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=69.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHH----------HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 555676556778998873488532505855773479----------9999862003433555327856631178887533
Q gi|254780442|r 167 TTQALTQKDREDLHAALQTCEVDWVALSFIQSADDL----------LEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 167 ~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di----------~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~s 236 (480)
+..-.|+++.+.++.++++. .+.+.-.+-++..++ --+..++ +.++.+=+|.-.-+-||++-++.+
T Consensus 210 pQKGa~~~~v~~ld~~l~~~-a~~~~~~~~~d~~~~~G~GAAGG~g~~l~~~l---ga~l~sG~d~v~~~~~l~~~i~~a 285 (378)
T pfam02595 210 PQKGATPAMVAVLDQGLSHF-ARVLEKALGRGVRDEPGAGAAGGMGAGLLAFL---GADLKSGIEIVLEATHLEDAVADA 285 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC---CCEECCHHHHHHHHHCHHHHHCCC
T ss_conf 44699999999999999999-99999983998445766544668899999974---989887699999875989783799
Q ss_pred HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 1247522220021587673689999999985139839980
Q gi|254780442|r 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 237 DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
|-|+-.-|-+--+...-|+|. .+.+.|++++||||.-
T Consensus 286 DlVITGEG~~D~QTl~GK~p~---~va~~A~~~~~Pviai 322 (378)
T pfam02595 286 DLVITGEGRIDSQSIHGKVPI---GVAAAAKKFNKPVIGI 322 (378)
T ss_pred CEEEECCCCCCCCCCCCCHHH---HHHHHHHHHCCCEEEE
T ss_conf 999989987753478987799---9999999839998999
No 71
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.15 E-value=2.7 Score=21.82 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 789999851996899814443544658999999998876301
Q gi|254780442|r 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER 336 (480)
Q Consensus 295 ~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~ 336 (480)
-|+...++-||++|.+. ||.=.+.-+ ..++|+++-+.
T Consensus 252 ~DaiE~ilAGAsaVQv~--Ta~~~~G~~---v~~~i~~eL~~ 288 (333)
T PRK07565 252 EDVIKMLLAGADVVMIA--SALLRHGPD---YIGTILAGLED 288 (333)
T ss_pred HHHHHHHHCCCCHHEEE--HHHHHHCCH---HHHHHHHHHHH
T ss_conf 99999998098863362--236653727---99999999999
No 72
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=85.70 E-value=2.9 Score=21.67 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HHHH--HHHEEEEECCCCC
Q ss_conf 567789988734885325058557734799999862003433555327856631178----8875--3312475222200
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYAS----EIIQ--LSDAVMVARGDLG 247 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~----eI~~--~sDgimiaRGDLg 247 (480)
+|.++++.+++. +..++.+.+. +-..+.++-+.+.+++-.+|-.++--+|+.+=+ =|.+ ..|||+=-|+.+
T Consensus 6 r~~~~l~~al~s-~~~~vfll~g-~I~~l~~~v~~~k~~gK~vfVHiDli~GL~~d~~av~fL~~~~~~dGIISTk~~~- 82 (174)
T pfam04309 6 RNLKDLDRALES-EYQVVFLLTG-HILNLKEIVKLLKQRGKTVFVHVDLVEGLSNDEEAIEFIKEVIEPDGIISTKSKV- 82 (174)
T ss_pred CCHHHHHHHHCC-CCCEEEEECC-CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCHHH-
T ss_conf 678899999849-9989999558-0878999999999879989998521677789889999999824899999688999-
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
Q ss_conf 21587673689999999985139839980576788
Q gi|254780442|r 248 VEMALELIPGIQKKLIRIARQLGKPVVIATQMLES 282 (480)
Q Consensus 248 ~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leS 282 (480)
|++|++.|-..|-=-=+++|
T Consensus 83 ---------------i~~Ak~~gl~tIqR~FliDS 102 (174)
T pfam04309 83 ---------------IKKAKKLGLPAIQRLFLLDS 102 (174)
T ss_pred ---------------HHHHHHCCCEEEEEEEEEEH
T ss_conf ---------------99999879928977643417
No 73
>KOG2550 consensus
Probab=85.57 E-value=2.4 Score=22.28 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCC--CCCHHH---HHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCC
Q ss_conf 556778998873488532505855--773479---9999862003433555-3278566311788875331247522220
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSFI--QSADDL---LEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDL 246 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSfV--r~~~di---~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDL 246 (480)
+.|++-+.+-.+. ++|+|.|--- +|---+ +.+|+-. .+..||+ -+-|.+-.+|| |...+||+-|.=|-=
T Consensus 250 e~dK~rl~ll~~a-GvdvviLDSSqGnS~~qiemik~iK~~y--P~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsG 324 (503)
T KOG2550 250 DDDKERLDLLVQA-GVDVVILDSSQGNSIYQLEMIKYIKETY--PDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSG 324 (503)
T ss_pred CHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEECCCEEEHHHHHHH--HHCCCCEEEECCCCC
T ss_conf 3016778886634-8868999668885045799999998668--8863431655338889999--873676057525567
Q ss_pred CHHCCHHHHH------HHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 0215876736------89999999985139839980576788882889840347789999851996899814
Q gi|254780442|r 247 GVEMALELIP------GIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 247 g~e~~~e~vp------~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
++.+--|.+. .+--+.-.-|+++|-|||--.-+- -+.+|+-|+--|++.+|+.+
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi~------------~~Ghi~KAl~lGAstVMmG~ 384 (503)
T KOG2550 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQ------------NVGHVVKALGLGASTVMMGG 384 (503)
T ss_pred CEEEECEEEECCCCCCCCHHHHHHHHHHCCCCEECCCCCC------------CCHHHHHHHHCCCHHHHCCC
T ss_conf 5054530123267762003269999976499655068758------------73177888753850631041
No 74
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=85.38 E-value=2.6 Score=21.91 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHCCCCCEECCCCCCC-------CHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHH--HHHEEEEECCCCCH
Q ss_conf 87348853250585577-------34799999862003433555--3278566311788875--33124752222002
Q gi|254780442|r 182 ALQTCEVDWVALSFIQS-------ADDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQ--LSDAVMVARGDLGV 248 (480)
Q Consensus 182 a~~~~~vD~ialSfVr~-------~~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~--~sDgimiaRGDLg~ 248 (480)
.+++.+++++++ +-|+ ..|-..++++.+.-++.+|+ -|-+.+-.. +.++ .+||+||+||-|+-
T Consensus 146 ~l~~~G~~~itv-H~Rt~~q~~~g~a~w~~i~~~k~~~~ipvi~NGdi~~~~d~~---~~l~~tg~dgvMigRga~~n 219 (309)
T pfam01207 146 RVEDAGAQALTV-HGRTRAQNYEGPADWDAIKQVKQAVSIPVIANGDITDAEDAQ---RCLSYTGADGVMIGRGALGN 219 (309)
T ss_pred HHHHCCCCEEEE-ECCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHH---HHHHHHCCCEEEECHHHHHC
T ss_conf 998468887999-676324026786541899999985898289808948899999---99861099999984897749
No 75
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=85.07 E-value=3 Score=21.46 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCEECCCCCCC--CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC-----CCCCHHCCHHHHHHHH
Q ss_conf 853250585577--347999998620034335553278566311788875331247522-----2200215876736899
Q gi|254780442|r 187 EVDWVALSFIQS--ADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR-----GDLGVEMALELIPGIQ 259 (480)
Q Consensus 187 ~vD~ialSfVr~--~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR-----GDLg~e~~~e~vp~~Q 259 (480)
..|-+.+|--++ +-|..+++..-...+.++++ -+---.+|+.++++.+||++|+- |----++.++++
T Consensus 177 ~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlv--GSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv---- 250 (263)
T COG0434 177 LADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLV--GSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERV---- 250 (263)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE--ECCCCHHHHHHHHHHCCCEEEEEEECCCCEECCCCCHHHH----
T ss_conf 8877999566678999989999998626987897--3688888999999872866997866038863684599999----
Q ss_pred HHHHHHHHHC
Q ss_conf 9999998513
Q gi|254780442|r 260 KKLIRIARQL 269 (480)
Q Consensus 260 k~ii~~~~~~ 269 (480)
+++++.++..
T Consensus 251 ~~~v~~a~~~ 260 (263)
T COG0434 251 RRFVEAARRL 260 (263)
T ss_pred HHHHHHHHHH
T ss_conf 9999999875
No 76
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=84.75 E-value=1.4 Score=23.89 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=38.0
Q ss_pred EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 32785663117888753312475222200215876736899999999851398399805767
Q gi|254780442|r 219 KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQML 280 (480)
Q Consensus 219 KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~l 280 (480)
.=+...=++.+.+.+...|+|.+.=-.=|+=.+ .+-..+|+.|+++||||+|-=+--
T Consensus 129 ~~~~~~L~~~~~~~l~~~d~VvLSDYaKGvLt~-----~v~~~~I~~Ar~~~~pVlVDPKg~ 185 (321)
T TIGR02198 129 AEEEARLLAAIKEQLASADAVVLSDYAKGVLTP-----SVVQEVIAAAREAGKPVLVDPKGK 185 (321)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 778999999999972328789998668763585-----789999999996689199807876
No 77
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.65 E-value=3.2 Score=21.33 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHH
Q ss_conf 67789988734885325058--5577347999998620
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIIS 210 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~ 210 (480)
+.++++..++. ++|-|.++ ++++++-+.++-+..+
T Consensus 85 s~e~~~~ll~~-GadkVvigs~a~~~p~~i~~~~~~~G 121 (253)
T PRK02083 85 SVEDARRLLRA-GADKVSINSAAVADPELITELADRFG 121 (253)
T ss_pred CHHHHHHHHHC-CCCEEEECCHHHHCCCHHHHHHHHCC
T ss_conf 38987689877-98789999846538535578897469
No 78
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=84.62 E-value=3.2 Score=21.32 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=73.4
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE----CCCCCHHCCH
Q ss_conf 789988734885325058557734799999862003433555327856631178887533124752----2220021587
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVA----RGDLGVEMAL 252 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimia----RGDLg~e~~~ 252 (480)
+.++..+++ +++++..||-.-.+.+..+|+ .+++++..+-+...-+... -..+|+|.+. =|.+|---.+
T Consensus 78 ~~~~~~~e~-~v~vv~~~~G~p~~~~~~~~~----~g~~v~~~v~s~~~A~~a~--~~G~D~iV~qG~EAGGH~G~~~~~ 150 (307)
T TIGR03151 78 ELVDLVIEE-KVPVVTTGAGNPGKYIPRLKE----NGVKVIPVVASVALAKRME--KAGADAVIAEGMESGGHIGELTTM 150 (307)
T ss_pred HHHHHHHHH-CCCCEEECCCCCHHHHHHHHH----CCCEEEEEECCHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHH
T ss_conf 999999860-898247279996899999998----5997999818999999999--649999997455446877864378
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 67368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 253 ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 253 e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
.-+|.+ . .....|||.|.=+.+. .+++.|.--|+|++++.
T Consensus 151 ~Lvp~v----~---d~~~iPViAAGGI~dg------------r~iaaalalGA~gV~mG 190 (307)
T TIGR03151 151 ALVPQV----V---DAVSIPVIAAGGIADG------------RGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHH----H---HHCCCCEEEECCCCCC------------HHHHHHHHCCCCEEEEC
T ss_conf 779999----8---5046865764113365------------88999997188478744
No 79
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=84.57 E-value=3.2 Score=21.31 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCCCEECCCCC--CCCHHHHHHHHHHH-CCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCC-----HHCCHH-HH
Q ss_conf 88532505855--77347999998620-03433555-32785663117888753312475222200-----215876-73
Q gi|254780442|r 186 CEVDWVALSFI--QSADDLLEIRKIIS-QNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLG-----VEMALE-LI 255 (480)
Q Consensus 186 ~~vD~ialSfV--r~~~di~~~r~~l~-~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg-----~e~~~e-~v 255 (480)
.++|.+-+--. ....-+..+|.+-. +.+++|+| .|-+.+|+++|-+ ..+|-|-+.=|-=. +..+.- --
T Consensus 237 aG~d~lv~dtahGhq~~~~~a~k~~~~ld~~~P~~aGn~v~a~G~rdl~~--aGa~~~kvGvGPGamCttrm~tGvGrPq 314 (476)
T TIGR01303 237 AGVDVLVIDTAHGHQEKMISAVKAVRALDLRVPIVAGNVVSAEGVRDLVE--AGANIIKVGVGPGAMCTTRMMTGVGRPQ 314 (476)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCEEECCCHHHHHH--CCCCEEEECCCCCCHHHHHHHHCCCCCH
T ss_conf 68858998346540689999999998604558654242241100488874--4761898646886023444430578713
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 68999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 256 PGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 256 p~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
|..--+.-..++++|+-|.--.-+- +| -||+-|+--|+.-+|..
T Consensus 315 fsavleCa~~a~~~G~h~WadGG~r-----~P-------rdvalalaaGasnvm~G 358 (476)
T TIGR01303 315 FSAVLECAAEARKLGKHVWADGGVR-----HP-------RDVALALAAGASNVMVG 358 (476)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCC-----CH-------HHHHHHHHHCCCCEEEE
T ss_conf 7899898899986077264068867-----63-------77777665064302441
No 80
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.91 E-value=3.4 Score=21.11 Aligned_cols=120 Identities=20% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHH-CCCCCEECCCCC--CCCHHH---HHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 676556778998873-488532505855--773479---9999862003433555-327856631178887533124752
Q gi|254780442|r 170 ALTQKDREDLHAALQ-TCEVDWVALSFI--QSADDL---LEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 170 ~ltekD~~di~~a~~-~~~vD~ialSfV--r~~~di---~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimia 242 (480)
.+++.|.+-+.-..+ ..++||+++.-. .+..-+ +.+|+... +..||| -+-|++++++|-+ ..+|+|.|.
T Consensus 104 Gi~~~d~~r~~~i~~~~~~~~~i~iDvA~G~~~~~~~~i~~ik~~~~--~~~iiaGNvaT~e~~~~L~~--~GaD~vkVG 179 (347)
T PRK05096 104 GTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP--DKTICAGNVVTGEMVEELIL--SGADIVKVG 179 (347)
T ss_pred ECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEECCCHHHHHHHHHHHH--CCCCEEEEC
T ss_conf 17878999999999528998989997798620889999999998789--98088143123999999997--378899976
Q ss_pred CCC---------CCHHCCHHHHHHHHHHHHHHH----HHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 222---------002158767368999999998----5139839980576788882889840347789999851996899
Q gi|254780442|r 243 RGD---------LGVEMALELIPGIQKKLIRIA----RQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIM 309 (480)
Q Consensus 243 RGD---------Lg~e~~~e~vp~~Qk~ii~~~----~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~im 309 (480)
=|- .|+-+| |-.-|..| +.++.|+|--.-+=. ..||+-|+--|||+||
T Consensus 180 IG~Gs~CtTR~~tGvG~P-------q~sai~~c~~~~~~~~~~iiaDGGi~~------------~gDi~KAla~GAd~VM 240 (347)
T PRK05096 180 IGPGSVCTTRVKTGVGYP-------QLSAVIECADAAHGLGGMIVSDGGCTV------------PGDVAKAFGGGADFVM 240 (347)
T ss_pred CCCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHCCCCCEEECCCCCC------------HHHHHHHHHCCCCEEE
T ss_conf 778754304522356730-------378999999986057994895688475------------0479999873898898
Q ss_pred ECC
Q ss_conf 814
Q gi|254780442|r 310 LSA 312 (480)
Q Consensus 310 Ls~ 312 (480)
|.+
T Consensus 241 ~G~ 243 (347)
T PRK05096 241 LGG 243 (347)
T ss_pred ECC
T ss_conf 673
No 81
>PRK08197 threonine synthase; Validated
Probab=83.82 E-value=3.4 Score=21.09 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=31.9
Q ss_pred EEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-EE
Q ss_conf 9999299899987666539379993687999999999999999888877887799985-22
Q gi|254780442|r 397 IIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISA-GL 456 (480)
Q Consensus 397 IiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~-G~ 456 (480)
++++| +..+.+-..+++.-.-++.+. ....--.+...+.+.|.++++|.||++. |.
T Consensus 322 ~v~Vs-D~Ei~~A~~~La~~eGi~~Ep---asA~alAgl~kl~e~G~i~~~~~VV~~lTG~ 378 (402)
T PRK08197 322 AIAVD-DEAILAALSELAREEGLFACP---EGAAALAAAKQLRESGWLKSGERVVLFNTGT 378 (402)
T ss_pred EEEEC-HHHHHHHHHHHHHHCCEEECC---HHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 99989-999999999999855927773---6999999999999829999999699990888
No 82
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=83.61 E-value=3.5 Score=21.03 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=46.4
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCCCCCCCCEEEEE
Q ss_conf 886999929989998766653937-9993687999999999999999888877887799985--2227888864159999
Q gi|254780442|r 394 KLEIIALSPMIQTARRLALVWGIH-CVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISA--GLPLGTPGSTNMLRIA 470 (480)
Q Consensus 394 ~~pIiaiT~~~~t~r~l~L~~GV~-p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~--G~p~~~~G~TN~irv~ 470 (480)
..+-+-+.+++.++..++-.+.-. ++++-+.-.+++.++.|.+.+.++++ |.+|.=- ....|...-+|.+.+.
T Consensus 364 ~~~~L~L~~npDIL~~i~~~~~~~~~~~VGFAAETe~li~~A~~KL~~K~~----D~IvaNdv~~~~~gFgsD~N~V~ii 439 (476)
T PRK13982 364 GPPPLQLVENPDILATISKLAENRPPLVIGFAAETEHLIDNARAKLARKGC----DWIVANDVSPATGVMGGDRNTVHLL 439 (476)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 766357767953999998742579988999803868379999999997298----9999807888899758885289999
Q ss_pred E
Q ss_conf 9
Q gi|254780442|r 471 Y 471 (480)
Q Consensus 471 ~ 471 (480)
.
T Consensus 440 ~ 440 (476)
T PRK13982 440 T 440 (476)
T ss_pred E
T ss_conf 6
No 83
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.29 E-value=3.6 Score=20.94 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH--HCCCCCHHHHHHHH--HHHHCCCCEEEEC
Q ss_conf 767368999999998513983998057678888--28898403477899--9985199689981
Q gi|254780442|r 252 LELIPGIQKKLIRIARQLGKPVVIATQMLESMV--TSPFPTRAEVSDVA--TAVFEEADAIMLS 311 (480)
Q Consensus 252 ~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~--~~p~PTRaEv~Dva--nav~dG~D~imLs 311 (480)
.+++-.+-+.+=..|.+++.|||+++|+=-..- .+.+|+ .+|+. -++.+-||.||+-
T Consensus 145 ~~~i~~i~~~Lk~lA~e~~v~Vi~~sQlnR~~~~~~~~~p~---l~dl~~S~~ieq~AD~vl~l 205 (242)
T cd00984 145 QQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPM---LSDLRESGSIEQDADVVMFL 205 (242)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999999999799399984678661227898866---01223320002017499998
No 84
>KOG2335 consensus
Probab=82.96 E-value=2.1 Score=22.69 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=38.1
Q ss_pred CCCCCEECC-----------CCCCCCHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHHHEEEEECCCCC
Q ss_conf 488532505-----------8557734799999862003433555--32785663117888753312475222200
Q gi|254780442|r 185 TCEVDWVAL-----------SFIQSADDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQLSDAVMVARGDLG 247 (480)
Q Consensus 185 ~~~vD~ial-----------SfVr~~~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~sDgimiaRGDLg 247 (480)
.-+++++.+ ++.-+=+-|+.+|+-+.+ +++|| -|.+.+-+++.-+. ..+||||+|||-|-
T Consensus 166 ~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~-tG~dGVM~arglL~ 238 (358)
T KOG2335 166 DAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCLKY-TGADGVMSARGLLY 238 (358)
T ss_pred HCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHHHH-HCCCEEEECCHHHC
T ss_conf 67986899936557762888887677999999974767--708950885768999999997-58746886000003
No 85
>PRK05211 consensus
Probab=82.76 E-value=3.7 Score=20.79 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=13.0
Q ss_pred EECCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 941877579999999997399789998
Q gi|254780442|r 11 STLGPSSFSEDVINRLHEEGTDVFRIN 37 (480)
Q Consensus 11 ~TlGPas~~~e~i~~l~~aG~nv~RiN 37 (480)
.|+|=--.+.+.+++++++|++=.-||
T Consensus 68 l~vGGGIrs~~~i~~ll~~GadkViig 94 (248)
T PRK05211 68 FCVAGGIKSVEDAREILSFGADKISIN 94 (248)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 896278013899999998799889989
No 86
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=82.66 E-value=3.8 Score=20.77 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCEEEEC
Q ss_conf 36899999999851-39839980576788882889840347789999851-99689981
Q gi|254780442|r 255 IPGIQKKLIRIARQ-LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE-EADAIMLS 311 (480)
Q Consensus 255 vp~~Qk~ii~~~~~-~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~d-G~D~imLs 311 (480)
.|.+-+++++.+++ ..+||++ .-.|.-.++.++|.|+.+ |+|||.|.
T Consensus 152 ~pe~v~~i~~~Vk~~~~iPV~v----------KLsPnvtdi~~iA~aa~~aGADgv~li 200 (413)
T PRK08318 152 VPELVEMVTRWVKRGSRLPVIA----------KLTPNITDIREPARAAKRGGADAVSLI 200 (413)
T ss_pred CHHHHHHHHHHHHHHCCCCEEE----------EECCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999988506885699----------828997528999999997699889998
No 87
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=82.65 E-value=3.1 Score=21.43 Aligned_cols=89 Identities=28% Similarity=0.469 Sum_probs=49.8
Q ss_pred HHHCCCCCEECCCCCCCC----------HHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHH--HHEEEEECCCCC
Q ss_conf 873488532505855773----------4799999862003433555--32785663117888753--312475222200
Q gi|254780442|r 182 ALQTCEVDWVALSFIQSA----------DDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQL--SDAVMVARGDLG 247 (480)
Q Consensus 182 a~~~~~vD~ialSfVr~~----------~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~--sDgimiaRGDLg 247 (480)
.++..+++.+.+ +.|++ +-|.++|+.+++ +.||+ -|-+ .+...+.++. +||+||+||-++
T Consensus 160 ~~~~~G~~~ltV-HgRtr~~~y~~~a~~~~I~~vk~~~~~--ipvi~NGdI~s---~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 160 ILEDAGADALTV-HGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKS---LEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHCCCCEEEE-ECCCHHHCCCCCCCHHHHHHHHHHCCC--CEEEECCCCCC---HHHHHHHHHHHCCCEEEECHHHHC
T ss_conf 999679878999-556676468986487999999986799--75985799499---999999998418987997435316
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2158767368999999998513983998057678888288984034778999
Q gi|254780442|r 248 VEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299 (480)
Q Consensus 248 ~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvan 299 (480)
-=-=+. .| |.++.=...| |+.+|+-|+.-
T Consensus 234 nP~l~~-------~i---------------~~~~~g~~~~-~~~~e~~~~~~ 262 (323)
T COG0042 234 NPWLFR-------QI---------------DYLETGELLP-PTLAEVLDILR 262 (323)
T ss_pred CCHHHH-------HH---------------HHHCCCCCCC-CCHHHHHHHHH
T ss_conf 955755-------33---------------5530688788-77999999999
No 88
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=82.03 E-value=4 Score=20.61 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=19.1
Q ss_pred HCC--CEEEEEHHHHHHH---HHCC--CCCHHHHHHHH-----HHHHCCCCEEEE
Q ss_conf 139--8399805767888---8288--98403477899-----998519968998
Q gi|254780442|r 268 QLG--KPVVIATQMLESM---VTSP--FPTRAEVSDVA-----TAVFEEADAIML 310 (480)
Q Consensus 268 ~~~--kpvivATq~leSM---~~~p--~PTRaEv~Dva-----nav~dG~D~imL 310 (480)
+++ ||.+||.-|=-.= ..+| --|-.|+-+.+ -.+-.|+|.+++
T Consensus 108 ~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLi 162 (311)
T COG0646 108 EAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILI 162 (311)
T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4478875389873268677677687666359999999999999998378758997
No 89
>PRK02747 consensus
Probab=81.81 E-value=4 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHH
Q ss_conf 789988734885325058--5577347999998620
Q gi|254780442|r 177 EDLHAALQTCEVDWVALS--FIQSADDLLEIRKIIS 210 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~ 210 (480)
++++..++. ++|-|.+. .+++++-+.++-+..+
T Consensus 87 e~~~~ll~~-GadkViigs~a~~np~l~~~~~~~fG 121 (257)
T PRK02747 87 DDIRKLLLA-GADKVSINSAAVARPEFVAEAADKFG 121 (257)
T ss_pred HHHHHHHHC-CCCEEEECHHHHHCCHHHHHHHHHCC
T ss_conf 887899876-99689834446548347777887559
No 90
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=81.05 E-value=4.3 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHCC-CCCEECCCC
Q ss_conf 655677899887348-853250585
Q gi|254780442|r 172 TQKDREDLHAALQTC-EVDWVALSF 195 (480)
Q Consensus 172 tekD~~di~~a~~~~-~vD~ialSf 195 (480)
+..|+..+.-.++.. ++|++-+.+
T Consensus 102 ~~~d~~~~~~~l~~~~~ad~ielNi 126 (301)
T PRK07259 102 TPEEYVEVAEKLSKAPNVDAIELNI 126 (301)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 7689999999864556888899965
No 91
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=80.86 E-value=4.3 Score=20.32 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred CHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEE--EECCCCCEEECCCC
Q ss_conf 99999999973997899988888-----989999999999999997499279999878986788--65489818965899
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHT-----SHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRV--GKFANSKVDLTEGQ 91 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg-----~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~--g~~~~~~i~l~~G~ 91 (480)
...+|+.|++.|..+. =+||- ..+....+-.-...+++.++++|...-|.-|++.+- ..++++.|.|-++
T Consensus 41 ~lpTI~~ll~~gakvv--i~SHlGRPkG~~d~~~SL~pva~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~G~I~LLEN- 117 (653)
T PRK13962 41 ALPTIKYALDRGAKVI--LLSHLGRPKGEVDPKYSLAPVAKRLSELLGKEVAFADDVIGEEVRKAVEQLKEGDVLLLEN- 117 (653)
T ss_pred HHHHHHHHHHCCCEEE--EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEE-
T ss_conf 9999999997889799--9806889999989876859999999999789728577678889999996379995899863-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCC
Q ss_conf 999953245564442212664422211336526740684
Q gi|254780442|r 92 IFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGR 130 (480)
Q Consensus 92 ~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~ 130 (480)
++|...+. -|.++|.+.+..--.+|++|..
T Consensus 118 -vRF~~~E~--------~nd~~fa~~LA~l~DiyVnDAF 147 (653)
T PRK13962 118 -VRFEKGET--------KNDPEFAKRLASLADIYVNDAF 147 (653)
T ss_pred -CCCCCCHH--------CCCHHHHHHHHHHCCEEEECCC
T ss_conf -68683110--------2899999999864789862331
No 92
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.76 E-value=4.4 Score=20.30 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 77579999999997399789998888898999999999999999749927
Q gi|254780442|r 15 PSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 (480)
Q Consensus 15 Pas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i 64 (480)
|-+++.+.+++++++|++++-+-.-+.+.++..+....++++.++++.+.
T Consensus 17 ~i~d~~~~ve~al~gGv~~vQlR~K~~~~~e~~~~a~~~~~l~~~~~v~l 66 (211)
T PRK03512 17 PVVDSVQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYNARL 66 (211)
T ss_pred EECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 53596999999998799999981799999999999999999999809859
No 93
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=80.29 E-value=4.5 Score=20.19 Aligned_cols=213 Identities=20% Similarity=0.188 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCCC--CCCCCHHHCCCCCEE
Q ss_conf 999999999999749927999987898678865489818965899999953245564442212--664422211336526
Q gi|254780442|r 47 CELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVML--PHPEIFASIKIGDRL 124 (480)
Q Consensus 47 ~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~~~~~~~~~~i~i--~y~~l~~~ik~Gd~I 124 (480)
.++-..|+.+-+..-.++-|- |++.+ +.....-.+.|+.++..+.-+.+.. ++..+.-.++.|+.|
T Consensus 9 sel~~~ik~~le~~~~~v~V~----------GEIS~--~~~~~sGH~YF~LkD~~a~i~~v~~~~~~~~l~~~~~~G~~V 76 (443)
T PRK00286 9 SELNGYVKSLLERDLGQVWVR----------GEISN--FTRPSSGHWYFTLKDEQAQIRCVMFRGSARRLKFKPEEGMQV 76 (443)
T ss_pred HHHHHHHHHHHHHHCCCEEEE----------EEECC--CEECCCCEEEEEEEECCCEEEEEEECCHHHHCCCCCCCCCEE
T ss_conf 999999999998348989999----------99646--662899649999981892899999928475289999899999
Q ss_pred EE--------ECCCEEECCCCCCCCEE----------EEEECCCCEEECCCCCCCCCCCCCCCCCCHHH---HHHHHHHH
Q ss_conf 74--------06842210234454112----------45513880871145644678544555676556---77899887
Q gi|254780442|r 125 LI--------DDGRVKLCVQEKGIGFI----------KCKVIAGISIADRKGISFPDTFLTTQALTQKD---REDLHAAL 183 (480)
Q Consensus 125 ~i--------dDG~i~l~V~~~~~~~i----------~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD---~~di~~a~ 183 (480)
.+ ..|.++|.|.+.....+ +-+-..-|..-.++.-.+|-.+-.+-.+|..+ +.|+.--+
T Consensus 77 ~v~g~i~~Y~~~g~~ql~v~~i~~~g~G~L~~~~e~lk~kL~~eGlFd~~~Kk~lP~~P~~IgvITS~tgAa~~Di~~~~ 156 (443)
T PRK00286 77 LVRGKVSVYEPRGDYQLIVEDIEPAGIGALAQAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVL 156 (443)
T ss_pred EEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 99999989868861899997812779218999999999999777796877789998785579998368438999999998
Q ss_pred HCC--CCCEE-CCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHH
Q ss_conf 348--85325-058557734799999862003433555327856631178887533124752222002158767368999
Q gi|254780442|r 184 QTC--EVDWV-ALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQK 260 (480)
Q Consensus 184 ~~~--~vD~i-alSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk 260 (480)
+.- .+.++ .-+-||-..-..++-+-+. .++. ....|.|+|+||-= ++|++-..-.
T Consensus 157 ~~R~p~~~i~l~p~~VQG~~A~~~I~~ai~-----------------~~~~-~~~~DvIIi~RGGG----S~eDL~~FNd 214 (443)
T PRK00286 157 SRRFPSVEVIIYPTLVQGEGAAASIVEAIE-----------------RANA-RGEVDVLIVARGGG----SLEDLWAFND 214 (443)
T ss_pred HCCCCCEEEEEEECCCCHHHHHHHHHHHHH-----------------HHHH-HCCCCEEEEECCCC----CHHHHHHCCC
T ss_conf 504996599998145626547999999999-----------------9852-24888899936878----8889765187
Q ss_pred HHHHHH-HHCCCEEEEE------HHHHHHHH--HCCCCCHHH
Q ss_conf 999998-5139839980------57678888--288984034
Q gi|254780442|r 261 KLIRIA-RQLGKPVVIA------TQMLESMV--TSPFPTRAE 293 (480)
Q Consensus 261 ~ii~~~-~~~~kpvivA------Tq~leSM~--~~p~PTRaE 293 (480)
..+.++ -....|||.| +-++|-.- .-|+||-|=
T Consensus 215 E~varaI~~s~iPVISaIGHE~D~Ti~D~VAD~Ra~TPTaAA 256 (443)
T PRK00286 215 EAVARAIAASKIPVISAVGHETDFTIADFVADLRAPTPTAAA 256 (443)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf 999999984899789514667775588886540379969999
No 94
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.12 E-value=2.1 Score=22.65 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=39.6
Q ss_pred HHHCCCCCEECCCCCCC--------CHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHHHEEEEECCCCCH
Q ss_conf 87348853250585577--------34799999862003433555--327856631178887533124752222002
Q gi|254780442|r 182 ALQTCEVDWVALSFIQS--------ADDLLEIRKIISQNKIGLMS--KIEKPRAIEYASEIIQLSDAVMVARGDLGV 248 (480)
Q Consensus 182 a~~~~~vD~ialSfVr~--------~~di~~~r~~l~~~~~~Iia--KIE~~~al~nl~eI~~~sDgimiaRGDLg~ 248 (480)
+++..+++++++- -|+ +-|-..++++...-++.+|+ -|-+.+...++-+ ...+||+||+||=||-
T Consensus 156 ~~~~~G~~~ltvH-~RT~~q~y~~~~~dw~~i~~~~~~~~iPvi~NGdI~s~~d~~~~~~-~tg~dgvMiGRgal~n 230 (312)
T PRK10550 156 AVQQAGATELVVH-GRTKEQGYRAEHIDWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA-ISGCDAVMIGRGALNI 230 (312)
T ss_pred HHHHCCCCEEEEE-CCCHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-HHCCCEEEECHHHHHC
T ss_conf 9997399879990-5526535899834899999999748998997079599999999987-1489999965855309
No 95
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=79.92 E-value=4.6 Score=20.11 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=41.2
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 999999999739978999888889899999999999999974992799998789
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQG 72 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~G 72 (480)
+.+++.+|.++|.++.|+-. ...+..+-+..||+.-...+.++++.+|.--
T Consensus 43 tv~Qi~~l~~aGceiVRvtv---p~~~~a~al~~I~~~l~~~~~~iPlvADIHF 93 (613)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTT---QGVREAENLMNINIGLRSQGYMVPLVADVHF 93 (613)
T ss_pred HHHHHHHHHHCCCCEEEECC---CCHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99999999985999899888---9999998499999998627998987973278
No 96
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=79.74 E-value=4.7 Score=20.07 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCC-CCC-HHHHHHHHHHHHC--
Q ss_conf 178887533124752222002158767368999999998513983998057678888288-984-0347789999851--
Q gi|254780442|r 228 YASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSP-FPT-RAEVSDVATAVFE-- 303 (480)
Q Consensus 228 nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p-~PT-RaEv~Dvanav~d-- 303 (480)
.+.+|..-+|||=..-.-+--+..... ...-..+++.|+++|..|++-|= ++. .|. ..++....+..++
T Consensus 266 ~l~~ia~~adgi~p~~~~~~~~~~~~~-~~~~~~lV~~ah~~GL~V~~wTv------n~e~~~~~~~d~~~~~~~l~~~~ 338 (359)
T PRK11143 266 AMKEVAKYADGIGPDYHMLVDETSTPG-NIKLTGMVKEAHQAKLVVHPYTV------RADALPEYATDVNQLYDILYNQA 338 (359)
T ss_pred HHHHHHHHCCCCCCCHHHCCCCCCCCC-CCCCHHHHHHHHHCCCEEEEEEC------CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 689999753703676454055666566-55738999999987998999963------67655433379999999876506
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99689981444354465899999999
Q gi|254780442|r 304 EADAIMLSAETASGSYPVDAVRTMSL 329 (480)
Q Consensus 304 G~D~imLs~ETa~G~yP~~~v~~~~~ 329 (480)
|+||| +-.||-.+++++.+
T Consensus 339 GVDGI-------iTD~Pd~a~~~L~~ 357 (359)
T PRK11143 339 GVDGV-------FTDFPDKAVKFLQK 357 (359)
T ss_pred CCCEE-------ECCCHHHHHHHHHH
T ss_conf 98789-------81878899999840
No 97
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=79.66 E-value=2.3 Score=22.37 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=33.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCC------------HHHHHHHHHHHHH
Q ss_conf 269994187757999999999739978999888889------------8999999999999
Q gi|254780442|r 7 IKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTS------------HDKMCELIKKIRA 55 (480)
Q Consensus 7 tKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~------------~e~~~~~i~~ir~ 55 (480)
=|+.||||-. ++|++++|-+||+|..==|+-.++ +|+-..+++++|+
T Consensus 155 L~~C~~LG~l--~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~ 213 (350)
T TIGR00433 155 LKTCATLGLL--DPEQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKE 213 (350)
T ss_pred CHHHHCCCCC--CHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHH
T ss_conf 1223203776--8899998886388611167367878766873432307767999999997
No 98
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=79.57 E-value=4.8 Score=20.03 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=83.9
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHHH--------------------
Q ss_conf 8853250585577347999998620---------03433555327856631178887533--------------------
Q gi|254780442|r 186 CEVDWVALSFIQSADDLLEIRKIIS---------QNKIGLMSKIEKPRAIEYASEIIQLS-------------------- 236 (480)
Q Consensus 186 ~~vD~ialSfVr~~~di~~~r~~l~---------~~~~~IiaKIE~~~al~nl~eI~~~s-------------------- 236 (480)
+.=-|+-++-..+....+--.+++. ..-++...=|||.-|.-+++||+-+.
T Consensus 183 g~gpYfYlPKle~~~EA~lwndvF~~~e~~lglp~gTIKatvLiEt~~a~fem~EilyeLr~h~~gLN~GrWDY~fS~Ik 262 (511)
T cd00480 183 GSGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIK 262 (511)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHH
T ss_conf 99853752366788999999999999999828998854788740231767519999999985312200451355689999
Q ss_pred ------HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEE--EEHHHHH-HHHHCCCCCH-HHHHHHHHHHHCCCC
Q ss_conf ------12475222200215876736899999999851398399--8057678-8882889840-347789999851996
Q gi|254780442|r 237 ------DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVV--IATQMLE-SMVTSPFPTR-AEVSDVATAVFEEAD 306 (480)
Q Consensus 237 ------DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvi--vATq~le-SM~~~p~PTR-aEv~Dvanav~dG~D 306 (480)
|.++=+|..+.++.| -+-.+++..++.|++.|-+.| +|.|+.- .|-..+-.-- .=..|=..-+.+|.|
T Consensus 263 ~~~~~~~~vlPdR~~vtM~~p--fm~AY~~llv~tchkrGa~A~GGMaA~Ip~k~d~~~n~~al~~v~~DK~rE~~~G~d 340 (511)
T cd00480 263 TFRNHPDFVLPDRAKVTMTSP--FMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHD 340 (511)
T ss_pred HHCCCCCCCCCCHHHCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 863386422676031345659--999999999999997298735674220578898332499999999999888876998
Q ss_pred EEEEC
Q ss_conf 89981
Q gi|254780442|r 307 AIMLS 311 (480)
Q Consensus 307 ~imLs 311 (480)
|-+..
T Consensus 341 gaWVa 345 (511)
T cd00480 341 GTWVA 345 (511)
T ss_pred CCCCC
T ss_conf 71335
No 99
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.38 E-value=4.8 Score=19.99 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=21.3
Q ss_pred HHHHHHH-HCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCEEEECC
Q ss_conf 9999985-139839980576788882889840347789999851-996899814
Q gi|254780442|r 261 KLIRIAR-QLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE-EADAIMLSA 312 (480)
Q Consensus 261 ~ii~~~~-~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~d-G~D~imLs~ 312 (480)
.+++..+ ...+||++ .-.|.-..+.+++.+..+ |+||+.|..
T Consensus 153 ~iv~~Vk~~~~~Pv~v----------KLsP~~~di~~ia~aa~~~GAdgi~liN 196 (325)
T cd04739 153 DILRAVKSAVTIPVAV----------KLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HHHHHHHHCCCCCEEE----------ECCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999998607886699----------5399830099999999975998899735
No 100
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=79.28 E-value=4.8 Score=19.97 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=32.4
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 99999999973997899988888989999999999999997499279999878
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQ 71 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~ 71 (480)
+.+.|++|.++|.++.|+-. ...++.+.+..|.+--..++.++++.+|.=
T Consensus 44 tv~qi~~L~e~GcdIVRvtV---p~~e~a~A~~~I~~rL~al~~~vPLVADiH 93 (633)
T TIGR00612 44 TVEQIRALEEAGCDIVRVTV---PDKESAEALEEIKERLQALGLNVPLVADIH 93 (633)
T ss_pred HHHHHHHHHHCCCCEEEEEE---CCHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999999971994899960---884679999999999986268887488730
No 101
>PRK04281 consensus
Probab=79.16 E-value=4.9 Score=19.94 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHC
Q ss_conf 67789988734885325058--55773479999986200
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIISQ 211 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~ 211 (480)
+.++++..++. ++|-|.+. ++++++-+.++-+..+.
T Consensus 85 s~e~~~~ll~~-GadkViigs~a~~np~~l~~~~~~fG~ 122 (254)
T PRK04281 85 TVADIRRLLNA-GADKVSINTAAVTRPDLIDEAAGFFGS 122 (254)
T ss_pred ECHHHHHHHHC-CCCEEEECHHHHHCCHHHHHHHHHCCC
T ss_conf 51889999976-998899777676492676767875598
No 102
>PRK10342 glycerate kinase I; Provisional
Probab=78.78 E-value=2.3 Score=22.38 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHH----------HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 555676556778998873488532505855773479----------9999862003433555327856631178887533
Q gi|254780442|r 167 TTQALTQKDREDLHAALQTCEVDWVALSFIQSADDL----------LEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 167 ~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di----------~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~s 236 (480)
+..-.|+++.+.++.++++. .+.+.-.|-++-.++ --+..++ +.++.+=+|.-..+-||++-++.+
T Consensus 210 pQKGa~~~~i~~Ld~~l~~~-a~~i~~~~~~d~~~~pGaGAAGGlg~~l~a~l---gA~l~sG~d~v~~~~~l~~~i~~a 285 (381)
T PRK10342 210 PQKGASEAMIVELDNNLSHY-ADVIKKALHVDVKDVPGAGAAGGMGAALMAFL---GAELKSGIEIVTTALNLEEHIHDC 285 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH---CCEECCHHHHHHHHHCHHHHHCCC
T ss_conf 66798999999999999999-99999983987213667643558999999984---989867799999886989884789
Q ss_pred HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE-EHHHH
Q ss_conf 124752222002158767368999999998513983998-05767
Q gi|254780442|r 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI-ATQML 280 (480)
Q Consensus 237 DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv-ATq~l 280 (480)
|=|+..-|-+--+.-.-|+|. .+.+.|++++||||. +.++-
T Consensus 286 DLVITGEG~~D~Qsl~GK~p~---~Va~~A~~~~~Pviai~G~v~ 327 (381)
T PRK10342 286 TLVITGEGRIDSQSIHGKVPI---GVANVAKKYHKPVIGIAGSLT 327 (381)
T ss_pred CEEEECCCCCCCCCCCCCHHH---HHHHHHHHHCCCEEEEECCCC
T ss_conf 999989977776678998799---999999980999999968668
No 103
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=78.69 E-value=5 Score=19.84 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHC----------------CCCEEEEEECCHHHHHHHHHHHHHH----H------EEE
Q ss_conf 8532505855773479999986200----------------3433555327856631178887533----1------247
Q gi|254780442|r 187 EVDWVALSFIQSADDLLEIRKIISQ----------------NKIGLMSKIEKPRAIEYASEIIQLS----D------AVM 240 (480)
Q Consensus 187 ~vD~ialSfVr~~~di~~~r~~l~~----------------~~~~IiaKIE~~~al~nl~eI~~~s----D------gim 240 (480)
-+-+|-|.++.+++.+..+..+..+ +.+.+|.=||...++-|.++|++.- + -++
T Consensus 123 pIfEVILPMt~s~~~i~~v~~~~~~~v~~~~~~~~~~~~~p~~I~vIPL~Ed~~~ll~~~~Il~~y~~~~~~~~~y~RVF 202 (487)
T PRK13655 123 PIFEVILPMTTSAEELIEVQRYYEKVVAGKSEEFLVDGENPKSIEVIPLFEDADALLKADEILEEYLKAEKQDPEYLRVF 202 (487)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 70689736778899999999999999965403206678888725788250674888548999999999875084222666
Q ss_pred EECCCCCHHCCHHHHHHHHHHHHHHHHH----CCCEEEEEHHHHHHHHHCCCCCHHHHH--HHHHHHHCCCCEEEECCCC
Q ss_conf 5222200215876736899999999851----398399805767888828898403477--8999985199689981444
Q gi|254780442|r 241 VARGDLGVEMALELIPGIQKKLIRIARQ----LGKPVVIATQMLESMVTSPFPTRAEVS--DVATAVFEEADAIMLSAET 314 (480)
Q Consensus 241 iaRGDLg~e~~~e~vp~~Qk~ii~~~~~----~~kpvivATq~leSM~~~p~PTRaEv~--Dvanav~dG~D~imLs~ET 314 (480)
+||-|=++-.|+=---+.-|.-+.+..+ .|-|++-- + =-...|=|.-.+ -+.+.+.+...---.+=-+
T Consensus 203 LarSDpAmnyG~isavl~~k~AL~~l~~~~~e~gi~iyPI---l---G~GS~PFRG~l~p~n~~~~~~eY~gv~TfTvQS 276 (487)
T PRK13655 203 LARSDPAMNYGHIAAVLSVKYALSRLYELEEELGIPIYPI---L---GVGSPPFRGHLSPENIERVLEEYPGVYTFTVQS 276 (487)
T ss_pred EECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC---C---CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 5147455312639999999999999998889719862000---0---578877588898076899998748816899876
Q ss_pred C-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 3-54465899999999887630
Q gi|254780442|r 315 A-SGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 315 a-~G~yP~~~v~~~~~i~~~~E 335 (480)
| .=.||.+-|+-..+.+.+..
T Consensus 277 AfrYDy~~~ev~~ai~~i~~~~ 298 (487)
T PRK13655 277 AFRYDYPVEEVVKAIEKIKEAL 298 (487)
T ss_pred EEECCCCHHHHHHHHHHHHHCC
T ss_conf 2002798899999999997037
No 104
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=78.21 E-value=5.2 Score=19.75 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=90.2
Q ss_pred ECCCCCCCCHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCC-----HHCCH
Q ss_conf 505855773479999986200-------------343355532785663117888753312475222200-----21587
Q gi|254780442|r 191 VALSFIQSADDLLEIRKIISQ-------------NKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLG-----VEMAL 252 (480)
Q Consensus 191 ialSfVr~~~di~~~r~~l~~-------------~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg-----~e~~~ 252 (480)
+-+.-|.+.+.+++.|+++.. ...+|=+-+|-+..+-.|+++.+..|-+=|.-.||- ++=+-
T Consensus 562 imLPMVt~~~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR~N 641 (756)
T COG3605 562 ILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDRNN 641 (756)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCC
T ss_conf 74101246578999999999999999973587767787433566447998699988547778855418989999870699
Q ss_pred -----------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf -----------673689999999985139839980576788882889840347789999851996899814443544658
Q gi|254780442|r 253 -----------ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPV 321 (480)
Q Consensus 253 -----------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~ 321 (480)
.-+-.+-|+|.+.|...|+||-+..+|- ..|.- ..-.|--|.+.+=.++ |++|+
T Consensus 642 ~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA----g~Pl~-------A~~LigLGfrslSMn~-~~v~~--- 706 (756)
T COG3605 642 TRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA----GDPLS-------AMALIGLGFRSLSMNP-RSVGP--- 706 (756)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHC----CCHHH-------HHHHHHCCCCCCCCCC-CCCCC---
T ss_conf 535443022478999999999999986299767515432----78588-------9999961757123484-44511---
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999988763010
Q gi|254780442|r 322 DAVRTMSLVASSAERD 337 (480)
Q Consensus 322 ~~v~~~~~i~~~~E~~ 337 (480)
||+|-+=+.-+|..
T Consensus 707 --VK~ml~~ld~~~~~ 720 (756)
T COG3605 707 --VKYLLRHLDLAEAR 720 (756)
T ss_pred --HHHHHHHCCHHHHH
T ss_conf --89999736799999
No 105
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=76.12 E-value=5.9 Score=19.34 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE---EECCCCCCCCCEEEEEE
Q ss_conf 869999299899987666539379993687999999999999999888877887799985---22278888641599999
Q gi|254780442|r 395 LEIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISA---GLPLGTPGSTNMLRIAY 471 (480)
Q Consensus 395 ~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~---G~p~~~~G~TN~irv~~ 471 (480)
.+.+-+.+++.....+.-.+- ..+.+-+.-.+++.++.|.+.+.++++ |.+|.=. +.+|| ..+|.+.++.
T Consensus 296 ~~~l~L~~npDIL~~i~~~~~-~~~~VGFaaEt~~l~~~A~~Kl~~K~~----D~IvaN~v~~~~gFg--sd~N~v~ii~ 368 (392)
T PRK05579 296 ELTLELVPNPDILAEVAALKD-NQPLVGFAAETGNVLEYARAKLKRKGL----DLIVANDVSAGGGFG--SDENAVTLLW 368 (392)
T ss_pred CCEEEEEECHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHHCCC----CEEEEECCCCCCCCC--CCCEEEEEEE
T ss_conf 865787528289999861289-975999963777189999999997598----999993589998878--7863999997
No 106
>pfam00311 PEPcase Phosphoenolpyruvate carboxylase.
Probab=75.70 E-value=6 Score=19.27 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=48.3
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHH------H----EEEEECCCCCHHCCHH----HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 3433555327856631178887533------1----2475222200215876----7368999999998513983998
Q gi|254780442|r 212 NKIGLMSKIEKPRAIEYASEIIQLS------D----AVMVARGDLGVEMALE----LIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 212 ~~~~IiaKIE~~~al~nl~eI~~~s------D----gimiaRGDLg~e~~~e----~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+++.+|.=||...++-|.++|++.- + -+|+||-|=++..|+= -+-.++.++-+...+.|-|+.-
T Consensus 166 ~~I~vIPL~Ed~~~ll~a~~Il~~y~~~~g~~~~y~RVFlarSDpAmnyG~isa~l~~k~Al~~l~~~~~e~gv~i~P 243 (500)
T pfam00311 166 KEIEVIPLFEDKDALLAADEIVEEYLKAKGHDPKYQRVFLARSDPAMNYGLISAVLSVKYALSRLYKLEEELGIKIYP 243 (500)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 855688260674888548999999999827883221565404745531252999999999999999888870986200
No 107
>PRK02145 consensus
Probab=75.68 E-value=6 Score=19.26 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=4.5
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7347999998620
Q gi|254780442|r 198 SADDLLEIRKIIS 210 (480)
Q Consensus 198 ~~~di~~~r~~l~ 210 (480)
..-++.++|++|.
T Consensus 237 ~~~~i~e~k~~l~ 249 (257)
T PRK02145 237 GEHTVGEAKRFMA 249 (257)
T ss_pred CCCCHHHHHHHHH
T ss_conf 9989999999999
No 108
>pfam04477 consensus
Probab=75.40 E-value=6.1 Score=19.21 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=82.3
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHC------------------------CCCEEEEEECCHHHHHHHHHHHHHHH-----
Q ss_conf 8532505855773479999986200------------------------34335553278566311788875331-----
Q gi|254780442|r 187 EVDWVALSFIQSADDLLEIRKIISQ------------------------NKIGLMSKIEKPRAIEYASEIIQLSD----- 237 (480)
Q Consensus 187 ~vD~ialSfVr~~~di~~~r~~l~~------------------------~~~~IiaKIE~~~al~nl~eI~~~sD----- 237 (480)
-+-+|-|.++.+++.+..+..+..+ ..+.+|.=||...++-|.++|++.-=
T Consensus 124 pIfEVILPMtts~~~i~~v~~~~~~~v~~k~~~~~~~~~vke~~g~~~p~~I~vIPL~Ed~~~ll~~~~Il~ey~~~~~~ 203 (498)
T pfam04477 124 PIFEVILPMTTSAEEIIRVYRYYEKFVAGKDRELYDDVTVKEWIGEFNPKEIEVIPLIEDKDALLNADEIVEEYLKAKKP 203 (498)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 62789735778899999999999999841344412563034422557877456883616748885489999999974584
Q ss_pred ---EEEEECCCCCHHCCHHHHHHHHHHHHHHHHH----CCCEEEEEHHHHHHHHHCCCCCHHHHH--HHHHHHHCCCCEE
Q ss_conf ---2475222200215876736899999999851----398399805767888828898403477--8999985199689
Q gi|254780442|r 238 ---AVMVARGDLGVEMALELIPGIQKKLIRIARQ----LGKPVVIATQMLESMVTSPFPTRAEVS--DVATAVFEEADAI 308 (480)
Q Consensus 238 ---gimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~----~~kpvivATq~leSM~~~p~PTRaEv~--Dvanav~dG~D~i 308 (480)
-+++||-|=++-.|+=---+.-|.-+.+..+ .|-|++-- + =-...|=|.-.+ -+.+.+.+...--
T Consensus 204 ~y~RVFLarSDpAmnyG~isavl~~k~AL~~l~~~~~e~gi~iyPI---l---G~GS~PFRG~l~p~n~~~~~~eY~gv~ 277 (498)
T pfam04477 204 KYLRVFLARSDPAMNYGLISAVLSVKYALSRLYKLEEELGIPIYPI---L---GVGSLPFRGGLSPENVERVLDEYPGVY 277 (498)
T ss_pred CCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE---E---CCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 5126765047455313539999999999999998888709862000---0---578877588898176899998748826
Q ss_pred EECCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9814443-54465899999999887630
Q gi|254780442|r 309 MLSAETA-SGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 309 mLs~ETa-~G~yP~~~v~~~~~i~~~~E 335 (480)
-.+=-+| .=.||.+-|+-..+.+.+.+
T Consensus 278 TfTvQSAfrYDy~~~ev~~ai~~i~~~~ 305 (498)
T pfam04477 278 TFTVQSAFKYDYPEEEVKKAIKKIKEAE 305 (498)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 8998762002798899999999998328
No 109
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=75.36 E-value=3.2 Score=21.33 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=58.9
Q ss_pred CCHHHCCCCCE-EEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHCC--
Q ss_conf 42221133652-67406842210234454112455138808711456446785445556765567789988---7348--
Q gi|254780442|r 113 EIFASIKIGDR-LLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA---LQTC-- 186 (480)
Q Consensus 113 ~l~~~ik~Gd~-I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a---~~~~-- 186 (480)
.+...++.||+ |+|=||.-. ++...+|-++|..++|..+ |..-..-.||++|++--+.- ++.-
T Consensus 208 ~ylpei~~GDKRilL~~G~Pi--------g~a~~Rip~~gE~RgNlav---GG~~~a~~L~~rD~eIc~~~~P~L~~rGl 276 (322)
T TIGR01380 208 RYLPEIKEGDKRILLIDGEPI--------GYAVARIPAGGEFRGNLAV---GGRGEAQELSERDREICATVAPELKRRGL 276 (322)
T ss_pred ECHHHHHHCCCEEEEECCEEC--------CCCEEECCCCCCCCHHHCC---CCEEEECCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 020576617965999788350--------0101402788750002002---88622002667899999871610020774
Q ss_pred ---CCCEECC----CCCCCCHHHHHHHHHHH
Q ss_conf ---8532505----85577347999998620
Q gi|254780442|r 187 ---EVDWVAL----SFIQSADDLLEIRKIIS 210 (480)
Q Consensus 187 ---~vD~ial----SfVr~~~di~~~r~~l~ 210 (480)
|+|.|+= =.|-|+--++|+.+.-+
T Consensus 277 ~fvGiDVIG~~LTEvNVTSPTGi~Ei~~~~G 307 (322)
T TIGR01380 277 LFVGIDVIGGYLTEVNVTSPTGIREIDRQKG 307 (322)
T ss_pred EEEEEEEECCCCEEEECCCCHHHHHHHHHCC
T ss_conf 7975467778007983146456898876358
No 110
>PRK06352 threonine synthase; Validated
Probab=75.18 E-value=6.2 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHEEEEECCCCCHHCCHHH
Q ss_conf 3124752222002158767
Q gi|254780442|r 236 SDAVMVARGDLGVEMALEL 254 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~e~ 254 (480)
-|.+.+.-|.-|.-.++.+
T Consensus 177 pD~vv~pvG~Gg~i~Gi~~ 195 (351)
T PRK06352 177 PDVLAIPVGNAGNISAYWK 195 (351)
T ss_pred CCEEEEECCCHHHHHHHHH
T ss_conf 9999996880689999999
No 111
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=74.27 E-value=6.5 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHHHHHCCCCCCCCEEEEEE
Q ss_conf 999999888877887799985
Q gi|254780442|r 434 ACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 434 a~~~l~~~g~i~~GD~VVvv~ 454 (480)
++..+++++.+.+|+.||++.
T Consensus 297 a~~~~~~~~~~~~~~~Vv~il 317 (324)
T cd01563 297 GLKKLREEGIIDKGERVVVVL 317 (324)
T ss_pred HHHHHHHHCCCCCCCEEEEEE
T ss_conf 999999847999729899996
No 112
>PRK08329 threonine synthase; Validated
Probab=74.23 E-value=6.5 Score=19.01 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 999999999988887788779998522
Q gi|254780442|r 430 MVNRACRIVVEQGFGKPGDRIIISAGL 456 (480)
Q Consensus 430 ~i~~a~~~l~~~g~i~~GD~VVvv~G~ 456 (480)
.--.++..+.++|.+. +..|+++.|.
T Consensus 315 ~alAal~kl~e~g~i~-~~vV~~lTG~ 340 (348)
T PRK08329 315 VALAAYWKAEDEGLIP-GSSLLPLTGS 340 (348)
T ss_pred HHHHHHHHHHHHCCCC-CCEEEEECCC
T ss_conf 9999999999828999-9889997988
No 113
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10; InterPro: IPR005729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the archaeal ribosomal protein and its equivalents in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=74.20 E-value=5.2 Score=19.76 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=30.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9998888898999999999999999749927999987898
Q gi|254780442|r 34 FRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGP 73 (480)
Q Consensus 34 ~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~Gp 73 (480)
+||.++-.+.....++.+.|++.++++| +++.||
T Consensus 3 ~RI~L~s~n~~~L~~vc~qi~~iA~~tg------v~~~GP 36 (99)
T TIGR01046 3 ARIKLTSTNVRSLEEVCEQIKEIAEKTG------VRMSGP 36 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCC------CEEECC
T ss_conf 5688615895788999999988777459------555588
No 114
>PRK06721 threonine synthase; Reviewed
Probab=74.13 E-value=6.6 Score=18.99 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=9.0
Q ss_pred HHEEEEECCCCCHHCCH
Q ss_conf 31247522220021587
Q gi|254780442|r 236 SDAVMVARGDLGVEMAL 252 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~ 252 (480)
-|.+.+.-|.-|.=.+.
T Consensus 177 pD~vv~pvG~Gg~i~G~ 193 (352)
T PRK06721 177 PDVLAIPVGNAGNITAY 193 (352)
T ss_pred CCEEEEECCCCHHHHHH
T ss_conf 99899917970999999
No 115
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=74.05 E-value=6.6 Score=18.98 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHH-HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH--------HE
Q ss_conf 556765567789-988734885325058557734799999862003433555327856631178887533--------12
Q gi|254780442|r 168 TQALTQKDREDL-HAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS--------DA 238 (480)
Q Consensus 168 l~~ltekD~~di-~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~s--------Dg 238 (480)
-|..|+.|.+.+ +.+.+ .+++-+++ ++..+..+++.+...++++.+.|--+.|....+..+..+ |+
T Consensus 7 ~~~~t~~~i~~~~~~a~~-~~~~av~v----~p~~v~~~~~~l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GAde 81 (201)
T cd00945 7 HPDATLEDIAKLCDEAIE-YGFAAVCV----NPGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCEEEE----CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 988999999999999986-29829998----8999999999808999838999588999997779999999999909998
Q ss_pred EEEECCCCCHHCC--HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCC-CCHHHHHHHHHHHH-CCCCEEEECCCC
Q ss_conf 4752222002158--7673689999999985139839980576788882889-84034778999985-199689981444
Q gi|254780442|r 239 VMVARGDLGVEMA--LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPF-PTRAEVSDVATAVF-EEADAIMLSAET 314 (480)
Q Consensus 239 imiaRGDLg~e~~--~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~-PTRaEv~Dvanav~-dG~D~imLs~ET 314 (480)
|-+ .-++|..-. .+.+..-=+.+...| ++|+|+.+-. | ... ++--|+-..++... -|+|-|=-|.--
T Consensus 82 id~-v~~~~~~~~~~~~~~~~ei~~v~~~~-~~g~~~kvi~---e----~~~l~~~~~i~~a~~~~~~~GadfvKtstG~ 152 (201)
T cd00945 82 IDV-VINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL---E----TRGLKTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred EEE-ECCHHHHHCCCHHHHHHHHHHHHHHH-CCCCCEEEEE---C----CCCCCCHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 997-40567775668899999999999973-5798379996---1----6778999999999999998099879855887
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 354465899999999887
Q gi|254780442|r 315 ASGSYPVDAVRTMSLVAS 332 (480)
Q Consensus 315 a~G~yP~~~v~~~~~i~~ 332 (480)
+-|.--.+.++.|.+.+.
T Consensus 153 ~~~~at~~~v~~m~~~~~ 170 (201)
T cd00945 153 GGGGATVEDVKLMKEAVG 170 (201)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 889899999999999828
No 116
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=73.73 E-value=6.7 Score=18.93 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCH-HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE----ECCCCCHHCC
Q ss_conf 789988734885325058557734-79999986200343355532785663117888753312475----2222002158
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSAD-DLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMV----ARGDLGVEMA 251 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~-di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimi----aRGDLg~e~~ 251 (480)
..++..++ .+++++..||=-... -++.+|+ .+++++..+-+.+..+...+ .-.|+|++ |=|..|.+..
T Consensus 105 ~~~~~~~~-~~~~~v~~~~G~p~~~~v~~~~~----~G~~v~~~v~s~~~A~~a~~--~G~D~iV~qG~eAGGH~G~~~~ 177 (330)
T pfam03060 105 DDDDSLKD-AKPKVVSFGFGLPPEDVIERLKE----SGTKVIPTVSSAKEARKAEA--AGADAVVAQGPEAGGHRGTEVG 177 (330)
T ss_pred HHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH----CCCEEEEECCCHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999997-49999998998982799999998----79989998189999999998--1999899966766777888777
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 252 LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 252 ~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
..-..+++ .+ ......|||.|.=+.+. .|++.|.--|+|++++.
T Consensus 178 ~~~~~L~~-~v---~~~~~iPvIaAGGI~dg------------~~iaaalalGA~gV~mG 221 (330)
T pfam03060 178 TGTFLLVP-TV---VDAVDIPVIAAGGIADG------------RGIAAALALGAEGVQIG 221 (330)
T ss_pred CCHHHHHH-HH---HHHCCCCEEEECCCCCH------------HHHHHHHHCCCCEEEEC
T ss_conf 30777789-99---98716977852662899------------99999996799899971
No 117
>pfam00150 Cellulase Cellulase (glycosyl hydrolase family 5).
Probab=73.69 E-value=6.7 Score=18.92 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHCCCCEEEEECCC----------CCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 7579999999997399789998888----------8989999999999999997499279999878
Q gi|254780442|r 16 SSFSEDVINRLHEEGTDVFRINMSH----------TSHDKMCELIKKIRAVELRSRRPIGILIDLQ 71 (480)
Q Consensus 16 as~~~e~i~~l~~aG~nv~RiN~SH----------g~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~ 71 (480)
.+...+.+..+.+.|+|.+||.++. ...+...+.++.+=+.+.+.|. -+++|+-
T Consensus 23 ~~~~~~~~~~i~~~GfN~vRlP~~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~gl--~vIlD~H 86 (276)
T pfam00150 23 FPDTKDMIDEVKAAGFNTVRIPVSWEALYPGEPGYKIDPAWLNRVDEVVDAAIDNGM--YVIIDWH 86 (276)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEECC
T ss_conf 652899999999859995974109999316778886698999999999999998899--9999714
No 118
>TIGR01038 L22_arch ribosomal protein L22; InterPro: IPR005721 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=72.72 E-value=2.7 Score=21.84 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHC--CCCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 368999999998513-98399805767888828--8984034778999985199-6899814443544658999999998
Q gi|254780442|r 255 IPGIQKKLIRIARQL-GKPVVIATQMLESMVTS--PFPTRAEVSDVATAVFEEA-DAIMLSAETASGSYPVDAVRTMSLV 330 (480)
Q Consensus 255 vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~--p~PTRaEv~Dvanav~dG~-D~imLs~ETa~G~yP~~~v~~~~~i 330 (480)
||+=-|.....|+.. |.-+==|+-.||--+.. |+|=|==-.-|+. .-|. |-. -=+.|.||+++.+++-++
T Consensus 19 l~iS~K~a~E~craI~Gm~l~~A~KYLe~Vi~~~raVPFRR~~~kvGh--r~G~ak~~----Gw~~GRYP~KaAk~~lk~ 92 (151)
T TIGR01038 19 LRISFKHAREICRAIRGMKLEEARKYLEDVIEMKRAVPFRRYNKKVGH--RRGLAKKW----GWTAGRYPVKAAKFILKV 92 (151)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCC--CCCCCCCC----CCCCCCCCHHHHHHHHHH
T ss_conf 864655478999873696368888889999986088520201676135--77761205----777888607899999999
Q ss_pred HHHHHCCHHHHHH
Q ss_conf 8763010124444
Q gi|254780442|r 331 ASSAERDSSWLEM 343 (480)
Q Consensus 331 ~~~~E~~~~~~~~ 343 (480)
...+|++-.+..+
T Consensus 93 L~NaeANAE~KGL 105 (151)
T TIGR01038 93 LQNAEANAEYKGL 105 (151)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999988875289
No 119
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=71.82 E-value=7.4 Score=18.62 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=40.4
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 999999999739978999888889899999999999999974992799998789
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQG 72 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~G 72 (480)
+.+++.+|.++|.++.|+-. ...+..+-+..||+--...+.++++.+|.--
T Consensus 47 tv~Qi~~l~~aGceiVRvtv---p~~~~A~al~~I~~~l~~~~~~iPlvADIHF 97 (606)
T PRK00694 47 TVRQICALQEHGCDIVRVTV---QGIKEAQACEHIKERLIQQGISIPLVADIHF 97 (606)
T ss_pred HHHHHHHHHHCCCCEEEECC---CCHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99999999985999899877---9999998699999998636999998866688
No 120
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.69 E-value=7.4 Score=18.60 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 7899998519968998
Q gi|254780442|r 295 SDVATAVFEEADAIML 310 (480)
Q Consensus 295 ~Dvanav~dG~D~imL 310 (480)
.|++..+.-|||.|+|
T Consensus 298 ~da~~~i~aGAslVQl 313 (336)
T PRK05286 298 EDAYEKIRAGASLVQI 313 (336)
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999999869968874
No 121
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.71 E-value=7.4 Score=18.63 Aligned_cols=16 Identities=6% Similarity=0.360 Sum_probs=6.8
Q ss_pred HHHHHHCCCCEEEEEC
Q ss_conf 9999973997899988
Q gi|254780442|r 23 INRLHEEGTDVFRINM 38 (480)
Q Consensus 23 i~~l~~aG~nv~RiN~ 38 (480)
...+..-|++++-+-+
T Consensus 57 a~NiasLGa~a~l~Gv 72 (467)
T COG2870 57 AKNIASLGANAYLVGV 72 (467)
T ss_pred HHHHHHHCCCEEEEEE
T ss_conf 9889870886799876
No 122
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=70.45 E-value=7.9 Score=18.41 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHCCCCEEEEEECCH-----------HHH-----HHHHHHHHH
Q ss_conf 567789988734885325058--55773479999986200343355532785-----------663-----117888753
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIISQNKIGLMSKIEKP-----------RAI-----EYASEIIQL 235 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~~~~~IiaKIE~~-----------~al-----~nl~eI~~~ 235 (480)
++.++++..++. ++|-|.+. ++++++-+.++-+..++.. |++-|+-+ .+. .++.+.++.
T Consensus 81 rs~~~~~~~l~~-GadkVvigs~~~~n~~~~~~~~~~~Gsq~--Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~ 157 (243)
T cd04731 81 RSLEDARRLLRA-GADKVSINSAAVENPELIREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKE 157 (243)
T ss_pred EEHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHCCCCC--EEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 647999999977-99789989844237714357887569930--999999765378962898469844126789999999
Q ss_pred -----HHEEE---EECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf -----31247---52222002158767368999999998513983998057678888288984034778999985-1996
Q gi|254780442|r 236 -----SDAVM---VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVF-EEAD 306 (480)
Q Consensus 236 -----sDgim---iaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~-dG~D 306 (480)
...|+ |+|--...-..++-+ =..+...+.|+|.+.-+=. ..|+..+.. .|+|
T Consensus 158 ~~~~G~geil~tdI~~DGt~~G~d~~l~-------~~i~~~~~~piI~sGGi~~------------~~di~~~l~~~~~~ 218 (243)
T cd04731 158 VEELGAGEILLTSMDRDGTKKGYDLELI-------RAVSSAVNIPVIASGGAGK------------PEHFVEAFEEGGAD 218 (243)
T ss_pred HHHCCCCEEEEEEECCCCCCCCCCHHHH-------HHHHHHCCCCEEEECCCCC------------HHHHHHHHHHCCCE
T ss_conf 9846987899987257685665799999-------9999868999999889999------------99999999878982
Q ss_pred EEEECCCCCCCCCHHH
Q ss_conf 8998144435446589
Q gi|254780442|r 307 AIMLSAETASGSYPVD 322 (480)
Q Consensus 307 ~imLs~ETa~G~yP~~ 322 (480)
|+..+.==..|++.++
T Consensus 219 gv~~g~~~~~~~~~l~ 234 (243)
T cd04731 219 AALAASIFHFGEYTIA 234 (243)
T ss_pred EEEEHHHHHCCCCCHH
T ss_conf 9988227676998999
No 123
>PRK01659 consensus
Probab=70.31 E-value=7.9 Score=18.39 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=12.2
Q ss_pred HHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHH
Q ss_conf 789988734885325058--5577347999998620
Q gi|254780442|r 177 EDLHAALQTCEVDWVALS--FIQSADDLLEIRKIIS 210 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~ 210 (480)
++++..++. ++|-|.+. .+++++-++++-+..+
T Consensus 87 e~~~~~l~~-GadkViigs~a~~n~~~i~~~~~~~G 121 (252)
T PRK01659 87 KDMKRLLRA-GADKVSINSAAVLRPELITEGADHFG 121 (252)
T ss_pred HHHHHHHHC-CCCEEEECHHHHHCHHHHHHHHHHCC
T ss_conf 888898744-88559831777529153214676468
No 124
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=70.30 E-value=7.9 Score=18.39 Aligned_cols=109 Identities=14% Similarity=0.239 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEE---------EECCHHHHHHHHHHHHHH
Q ss_conf 45556765567789988734885325058557734799999862003433555---------327856631178887533
Q gi|254780442|r 166 LTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMS---------KIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 166 i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~Iia---------KIE~~~al~nl~eI~~~s 236 (480)
++.+.+.+...+.|..|.+ .+|..+..+-+ +.++...+.++..... .|++ .-.+...++.+.+.+...
T Consensus 12 L~~~~~~~d~~~vi~~a~~-~gv~~i~~~g~-~~~~~~~~~~l~~~~~-~i~~~vGiHP~~~~~~~~~~~~~l~~~l~~~ 88 (258)
T PRK11449 12 FDFPPFSGDEEASLQRAAQ-AGVGKIIVPAT-EAANFARVLALAERYQ-PLYAALGLHPGMLEKHSDVSLDQLQQALERR 88 (258)
T ss_pred CCCHHHCCCHHHHHHHHHH-CCCCEEEEECC-CHHHHHHHHHHHHHCC-CCEEECCCCCCHHHCCCCCCHHHHHHHHHHC
T ss_conf 9981547699999999998-29999999349-9999999999987596-3018705897611105700599999999818
Q ss_pred HEEEEECCCCCHHCCHHH-HHHHHHH----HHHHHHHCCCEEEEEH
Q ss_conf 124752222002158767-3689999----9999851398399805
Q gi|254780442|r 237 DAVMVARGDLGVEMALEL-IPGIQKK----LIRIARQLGKPVVIAT 277 (480)
Q Consensus 237 DgimiaRGDLg~e~~~e~-vp~~Qk~----ii~~~~~~~kpvivAT 277 (480)
..=.+|=|..|.+.--.. -...|++ .+..|.++++|+++-+
T Consensus 89 ~~~vvaIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~ 134 (258)
T PRK11449 89 PAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHS 134 (258)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7878998345647788998699999999999999998499759862
No 125
>PRK06835 DNA replication protein DnaC; Validated
Probab=69.55 E-value=8.2 Score=18.28 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHH
Q ss_conf 85325058557734799999862003433555327856631178887533124752222002158767368999999998
Q gi|254780442|r 187 EVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIA 266 (480)
Q Consensus 187 ~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~ 266 (480)
+...+ |+...+-+..+++.-.+ +....+.+.+.+..+|=++|+ |||.|..-+-.-..==.||..=
T Consensus 211 g~sVi---y~ta~~L~~~l~~~~~~----------~~~~~~~~~~~l~~~DLLIID--DLG~E~~t~~~~~~Lf~iIN~R 275 (330)
T PRK06835 211 GKTVI---YRTSDELIENLREIRFN----------NDNDAPELEDLLINCDLLIID--DLGTESITEFSKTELFNLINKR 275 (330)
T ss_pred CCEEE---EEEHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHCCEEEEE--CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99499---96299999999997545----------764489999999618989972--1034558868999999999999
Q ss_pred HHCCCEEEEEHHHHHH
Q ss_conf 5139839980576788
Q gi|254780442|r 267 RQLGKPVVIATQMLES 282 (480)
Q Consensus 267 ~~~~kpvivATq~leS 282 (480)
...+||.|+.|++=..
T Consensus 276 ~~~~k~tIITTNl~~~ 291 (330)
T PRK06835 276 LLMNKKMIISTNLSLE 291 (330)
T ss_pred HHCCCCEEEECCCCHH
T ss_conf 8679997998899989
No 126
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=68.89 E-value=8.5 Score=18.18 Aligned_cols=183 Identities=18% Similarity=0.171 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCEECC--CCCCCCHHHHHHHHHHHCC-CCEE--EE---EECCHHHHHHHHHHHHHHHEE--
Q ss_conf 676556778998873488532505--8557734799999862003-4335--55---327856631178887533124--
Q gi|254780442|r 170 ALTQKDREDLHAALQTCEVDWVAL--SFIQSADDLLEIRKIISQN-KIGL--MS---KIEKPRAIEYASEIIQLSDAV-- 239 (480)
Q Consensus 170 ~ltekD~~di~~a~~~~~vD~ial--SfVr~~~di~~~r~~l~~~-~~~I--ia---KIE~~~al~nl~eI~~~sDgi-- 239 (480)
.++..|+..|--.+...+++.|=+ ||+ +++++..+|+...-- +.++ ++ ...+..+++.+.+ ...|.|
T Consensus 10 ~~~~e~K~~i~~~L~~~Gv~~IEvg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~g~~~i~i 86 (237)
T pfam00682 10 AFSVEEKLAIARALDEAGVDEIEVGFPFM-SPTDFESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKG--AGADRVHV 86 (237)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHH--CCCCEEEE
T ss_conf 98999999999999984989899957758-9735999997765025875101000341049999999996--79999999
Q ss_pred EEECCCCC----HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHH----HHHCCCCEEEEC
Q ss_conf 75222200----2158767368999999998513983998057678888288984034778999----985199689981
Q gi|254780442|r 240 MVARGDLG----VEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT----AVFEEADAIMLS 311 (480)
Q Consensus 240 miaRGDLg----~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvan----av~dG~D~imLs 311 (480)
.+.--|.- .-...++.-..-+.++..|++.|.+|-. ..|..+|++...+.. +..-|+|.|.|+
T Consensus 87 ~~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f---------~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 157 (237)
T pfam00682 87 FIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVEL---------GCEDAGRTDLAFLIEVVEVAQEAGATRINIA 157 (237)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE---------EECCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 6105787899885789999999999999999986990588---------4051232478899999999986198579736
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 4443544658999999998876301012444444320387888878999999998610478689
Q gi|254780442|r 312 AETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAI 375 (480)
Q Consensus 312 ~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aI 375 (480)
.-+- .-.|.++-+.++.+....-... . .....++. -+|.+-...|...+++.|
T Consensus 158 DT~G-~~~P~~v~~lv~~l~~~~~~~~-i-------~~H~Hn~~--Gla~aN~l~A~~aG~~~i 210 (237)
T pfam00682 158 DTVG-VLTPNEAADLISALKDRVPPVI-I-------EVHCHNDL--GMAVANSLAAVEAGADRV 210 (237)
T ss_pred CCCC-CCCHHHHHHHHHHHHHCCCCCC-E-------EEEECCCC--CHHHHHHHHHHHHCCCEE
T ss_conf 8645-5798999999999997089871-5-------88744886--729999999999689999
No 127
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.75 E-value=8.5 Score=18.16 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=67.4
Q ss_pred HHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHCCCC--EEEEEE---------C-----C-HHHHHHHHHHHH-
Q ss_conf 67789988734885325058--55773479999986200343--355532---------7-----8-566311788875-
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIISQNKI--GLMSKI---------E-----K-PRAIEYASEIIQ- 234 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~~~~--~IiaKI---------E-----~-~~al~nl~eI~~- 234 (480)
+.++++..++. ++|.|.++ .+++++-+.++-+..+...+ .|=+|. . + ...++.+.+..+
T Consensus 86 s~e~~~~ll~~-GadkViigS~a~~np~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~~d~~~~~~~~ 164 (252)
T PRK13597 86 SLEDARKLLLS-GADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVEL 164 (252)
T ss_pred CHHHHHHHHHC-CCCEEEECHHHHHCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHH
T ss_conf 08999999856-98779832666749378999998749965299998886189741675387275697699999999964
Q ss_pred HHHEEE---EECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 331247---52222002158767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 235 LSDAVM---VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 235 ~sDgim---iaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
.+..++ |+|--...-..++-+ -..++....|+|.+.-+= ...|+..+..-|++|+.+.
T Consensus 165 G~geil~tdI~rDGt~~G~d~~l~-------~~i~~~~~~pvIasGGv~------------s~~dl~~l~~~g~~gvi~G 225 (252)
T PRK13597 165 GAGEILLTSMDRDGTKEGYDLRLT-------RMVAEAVGVPVIASGGAG------------RMEHFLEAFQAGAEAALAA 225 (252)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHH-------HHHHHCCCCCEEEECCCC------------CHHHHHHHHHCCCCEEEEH
T ss_conf 899999975737684447695999-------999850799899978989------------9999999987899699871
Q ss_pred CCCCCCCCHHH
Q ss_conf 44435446589
Q gi|254780442|r 312 AETASGSYPVD 322 (480)
Q Consensus 312 ~ETa~G~yP~~ 322 (480)
.==..|++..+
T Consensus 226 ~al~~~~~s~~ 236 (252)
T PRK13597 226 SVFHFGEIPIP 236 (252)
T ss_pred HHHHCCCCCHH
T ss_conf 27677999999
No 128
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=68.52 E-value=8.6 Score=18.13 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCCCCCCHHHHHHHHHHHCC--------CCEEEEEECCHHHHHHHHHHHHHH------H----------EEEEECCC--
Q ss_conf 058557734799999862003--------433555327856631178887533------1----------24752222--
Q gi|254780442|r 192 ALSFIQSADDLLEIRKIISQN--------KIGLMSKIEKPRAIEYASEIIQLS------D----------AVMVARGD-- 245 (480)
Q Consensus 192 alSfVr~~~di~~~r~~l~~~--------~~~IiaKIE~~~al~nl~eI~~~s------D----------gimiaRGD-- 245 (480)
-+|..+++.||.++--++++. +++|+.=-||.+.|+|-..|+..- + .||+.=-|
T Consensus 490 IISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSn 569 (910)
T COG2352 490 IISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSN 569 (910)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 21136877889999999987189776678545015332098886208999999758499999737887047774155565
Q ss_pred --CCHHCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf --0021587673689999999985139839
Q gi|254780442|r 246 --LGVEMALELIPGIQKKLIRIARQLGKPV 273 (480)
Q Consensus 246 --Lg~e~~~e~vp~~Qk~ii~~~~~~~kpv 273 (480)
=|.=..-..+..+|+.++..|.++|.-.
T Consensus 570 KDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 570 KDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 543310667999999999999999819569
No 129
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=68.30 E-value=8.7 Score=18.10 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 5325058557734799999862003433555327856631178887
Q gi|254780442|r 188 VDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 188 vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~ 233 (480)
..|+ |+-==++++|.++-+.+....+=+=|.+|+.-|.++++.|-
T Consensus 153 ~p~~-LAGGl~~~NV~~ai~~~~p~gvDvsSgvE~~pG~KD~~ki~ 197 (203)
T cd00405 153 KPVI-LAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIR 197 (203)
T ss_pred CCEE-EECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 9879-97788988999999850998999767015789976999999
No 130
>KOG3774 consensus
Probab=67.97 E-value=6.6 Score=18.98 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=16.9
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999418775799999999973997899988888989999999999999
Q gi|254780442|r 9 IISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAV 56 (480)
Q Consensus 9 Ii~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~ 56 (480)
+.--.||..||- +-+++-.--|+| |||-|......+++-++..
T Consensus 211 ~~~~~g~G~CSa--liKllPgn~dll---~ahvtwssy~~MlRv~K~y 253 (563)
T KOG3774 211 VFKRWGMGHCSA--LIKLLPGNEDLL---FAHVTWSSYQAMLRVIKKY 253 (563)
T ss_pred CCCCCCCCCHHH--HHHCCCCCCCEE---EEEEEHHHHHHHHHHHHHE
T ss_conf 545688864001--231068986547---8874287799999999860
No 131
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=67.45 E-value=4.4 Score=20.29 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHH----------HHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 4455567655677899887348853250585577347999998----------620034335553278566311788875
Q gi|254780442|r 165 FLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRK----------IISQNKIGLMSKIEKPRAIEYASEIIQ 234 (480)
Q Consensus 165 ~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~----------~l~~~~~~IiaKIE~~~al~nl~eI~~ 234 (480)
.-+....|+++.+-++.++.+. .+.+ +.....|+..+.- ++.-....+.+=||.-.-+-||++-++
T Consensus 208 FGPQKGat~~~v~~lD~~l~hf-a~~~---~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l~~Gi~iV~~~~~le~~v~ 283 (378)
T COG1929 208 FGPQKGATPEMVEELDQALSHF-AEVL---EQATGKDVIDVPGAGAAGGMGAGLLAFLQAELKSGIEIVLEATNLEDAVK 283 (378)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH-HHHH---HHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHC
T ss_conf 4476689999999999999999-9999---98746132338887420147999999863754563799998747997616
Q ss_pred HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 331247522220021587673689999999985139839980
Q gi|254780442|r 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 235 ~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
.+|=|+..-|-+--+....|+|.- +-+.|++++||||..
T Consensus 284 daDLVITGEGr~D~Qs~~GK~pig---VA~~Akk~~vPvIai 322 (378)
T COG1929 284 DADLVITGEGRIDSQSLHGKTPIG---VAKLAKKYGVPVIAI 322 (378)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHH---HHHHHHHHCCCEEEE
T ss_conf 698899678765210137861169---997516618988999
No 132
>PHA01630 putative group 1 glycosyl transferase
Probab=67.36 E-value=9.1 Score=17.97 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCCCCCCCHHHHH--HHHHHHCC-CCEE--------------EEEECCHHHHHHHHHHHHHHHEEEE-ECCCCCHHCC
Q ss_conf 0585577347999--99862003-4335--------------5532785663117888753312475-2222002158
Q gi|254780442|r 192 ALSFIQSADDLLE--IRKIISQN-KIGL--------------MSKIEKPRAIEYASEIIQLSDAVMV-ARGDLGVEMA 251 (480)
Q Consensus 192 alSfVr~~~di~~--~r~~l~~~-~~~I--------------iaKIE~~~al~nl~eI~~~sDgimi-aRGDLg~e~~ 251 (480)
-.|--|...||-. .|++-.+. +..- +.-+.++.--+++-++-..||=... .||. +-|+|
T Consensus 151 ~HS~~RKG~Di~~~v~~elqke~~d~Y~Lvkssn~~d~Rl~~l~gvk~plp~dd~~~lf~~~Di~f~p~RGG-aFEi~ 227 (333)
T PHA01630 151 PHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRGG-AFEIP 227 (333)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHCCEEEEECCCC-EEECC
T ss_conf 665454656889999999984578569999841556730212335447898167899874063799841586-03431
No 133
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=67.33 E-value=9.1 Score=17.96 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=8.4
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 789999851996899814
Q gi|254780442|r 295 SDVATAVFEEADAIMLSA 312 (480)
Q Consensus 295 ~Dvanav~dG~D~imLs~ 312 (480)
.|+.-++.-|+++|.+|+
T Consensus 193 eda~~l~~~Gv~~IdVSg 210 (326)
T cd02811 193 ETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHCCCCEEEECC
T ss_conf 999999967999999789
No 134
>PRK03220 consensus
Probab=67.14 E-value=9.1 Score=17.94 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHCCCCEEEEEECCHH----------HH------------HHH
Q ss_conf 567789988734885325058--557734799999862003433555327856----------63------------117
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIISQNKIGLMSKIEKPR----------AI------------EYA 229 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~~~~~IiaKIE~~~----------al------------~nl 229 (480)
++.++++..++. ++|-|.+. .+++++-+.++-+..+... |+.-|+.+. +. -++
T Consensus 85 rs~e~~~~ll~~-GadkVvigs~a~~~p~~~~~~~~~fG~q~--Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~~~~ 161 (257)
T PRK03220 85 RTVEDVDSLLRA-GADKVSVNTAAIARPELLAELARRFGSQC--IVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTGIDA 161 (257)
T ss_pred CCHHHHHHHHHC-CCCEEECHHHHHHCCHHHHHHHHHCCCEE--EEEEEEEEECCCCCCCCCCCEEEEECCCEEECCCCH
T ss_conf 879999999981-97508720667759477789998709866--999999886256774346874999728826028759
Q ss_pred HHHHHH-----HHEEE---EECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 888753-----31247---5222200215876736899999999851398399805767888828898403477899998
Q gi|254780442|r 230 SEIIQL-----SDAVM---VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAV 301 (480)
Q Consensus 230 ~eI~~~-----sDgim---iaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav 301 (480)
.+.++. ...++ |+|--..--..+|-+ + ..++....|+|.+.-+= ...|+..+.
T Consensus 162 ~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~----~---~i~~~~~~piIasGGv~------------s~~di~~l~ 222 (257)
T PRK03220 162 VEWAARGAELGVGEILLNSMDADGTKAGFDLEML----R---AVRAAVTVPVIASGGAG------------AVEHFAPAV 222 (257)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHH----H---HHHHHCCCCEEEECCCC------------CHHHHHHHH
T ss_conf 9999998626988899998868660237896999----9---99974899989987899------------999999999
Q ss_pred HCCCCEEEECCCCCCCCCHHH
Q ss_conf 519968998144435446589
Q gi|254780442|r 302 FEEADAIMLSAETASGSYPVD 322 (480)
Q Consensus 302 ~dG~D~imLs~ETa~G~yP~~ 322 (480)
.-|+||+..+.==..|++...
T Consensus 223 ~~g~~gv~~g~a~~~~~~s~~ 243 (257)
T PRK03220 223 AAGADAVLAASVFHFGELTIG 243 (257)
T ss_pred HCCCCEEEEHHHHHCCCCCHH
T ss_conf 789979987468788998899
No 135
>PRK00915 2-isopropylmalate synthase; Validated
Probab=66.63 E-value=9.3 Score=17.87 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCEECCCCC-CCCHHHHHHHHHHHCC-CCEEEEEECCHHHHH-HHH---HHHHHHHE----E
Q ss_conf 676556778998873488532505855-7734799999862003-433555327856631-178---88753312----4
Q gi|254780442|r 170 ALTQKDREDLHAALQTCEVDWVALSFI-QSADDLLEIRKIISQN-KIGLMSKIEKPRAIE-YAS---EIIQLSDA----V 239 (480)
Q Consensus 170 ~ltekD~~di~~a~~~~~vD~ialSfV-r~~~di~~~r~~l~~~-~~~IiaKIE~~~al~-nl~---eI~~~sDg----i 239 (480)
++|..|+..|.-.+.+.+||+|=..|. -|+.|.+.+|.+.... +..|.+-- .+.+ +++ +-+..+.. |
T Consensus 22 ~fs~e~K~~Ia~~L~~~GV~~IE~G~P~~s~~d~e~~~~i~~~~~~~~i~~~~---ra~~~did~a~eal~~~~~~~v~i 98 (511)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLA---RAVKKDIDAAAEALKPAEKPRIHT 98 (511)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98999999999999976989899826778978999999998605998999972---675552999999973589888999
Q ss_pred EEECCCCCHH----CCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHH---HHHHH-HHCCCCEEEEC
Q ss_conf 7522220021----5876736899999999851398399805767888828898403477---89999-85199689981
Q gi|254780442|r 240 MVARGDLGVE----MALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS---DVATA-VFEEADAIMLS 311 (480)
Q Consensus 240 miaRGDLg~e----~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~---Dvana-v~dG~D~imLs 311 (480)
.+.=-|+-++ ...|++-..-...++.|+.+|.-|....+ --||++.. +++.+ +.-|+|.|.|.
T Consensus 99 ~~~~S~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~f~~E---------D~srtd~~~l~~~~~aa~~aGa~~i~l~ 169 (511)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE---------DATRTDLDFLCRVVEAAIDAGATTINIP 169 (511)
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECC---------CCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9657889999997899999999999999999980985999324---------0577798999999999876499998645
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 44435446589999999988763
Q gi|254780442|r 312 AETASGSYPVDAVRTMSLVASSA 334 (480)
Q Consensus 312 ~ETa~G~yP~~~v~~~~~i~~~~ 334 (480)
.|.=+-.|.+.-+..+.+++..
T Consensus 170 -DTvG~~~P~~~~~~i~~l~~~~ 191 (511)
T PRK00915 170 -DTVGYTTPEEFGELIKTLRERV 191 (511)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHC
T ss_conf -6667769389999999999864
No 136
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=65.35 E-value=9.7 Score=17.73 Aligned_cols=36 Identities=8% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCEEEEEHHHHHHHHHCCC-CCHHHHHHHHHHHHCC
Q ss_conf 39839980576788882889-8403477899998519
Q gi|254780442|r 269 LGKPVVIATQMLESMVTSPF-PTRAEVSDVATAVFEE 304 (480)
Q Consensus 269 ~~kpvivATq~leSM~~~p~-PTRaEv~Dvanav~dG 304 (480)
.-+-|++.+++.+.|+.+.. +||.|+.-+.++.+|.
T Consensus 24 ~y~~cF~GselVdWLi~~~~~~sR~eAv~lgq~Lld~ 60 (81)
T cd04448 24 TYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDA 60 (81)
T ss_pred ECCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 8276348399899999868879999999999999868
No 137
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=65.10 E-value=10 Score=17.66 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEE
Q ss_conf 789999999986104786899970883799999841888869999299899987666539379993
Q gi|254780442|r 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVT 421 (480)
Q Consensus 356 ~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~ 421 (480)
...||..|+++-.+=. ++|=.+|.|+..++++=|..|+-.+|++..++..|.-..++.-++.
T Consensus 80 K~~IA~~Aa~lI~~gd----~I~lD~GTT~~~la~~L~~~~ltVvTNsl~ia~~L~~~~~~~vil~ 141 (240)
T PRK10411 80 KADIAREALAWIEEGM----VIALDASSTCWYLARQLPDIPIQVFTNSHPICQELGKRERIQLISS 141 (240)
T ss_pred HHHHHHHHHHHCCCCC----EEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEE
T ss_conf 9999999997589999----9999581999999998368981999898999999972899789998
No 138
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=64.99 E-value=10 Score=17.65 Aligned_cols=181 Identities=20% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHC---------CCCCHHHH
Q ss_conf 663117888753312475222200215876736899999999851398399805767888828---------89840347
Q gi|254780442|r 224 RAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTS---------PFPTRAEV 294 (480)
Q Consensus 224 ~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~---------p~PTRaEv 294 (480)
+..+|+.+|++.++|-+ -+-+....+-.+| .+++.|.+.|+++++...=|+.+..- |..+--+.
T Consensus 213 ~v~~~l~~i~~~a~grV------Iv~tfaSni~Ri~-~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~~~~~~~~i~~ 285 (555)
T COG0595 213 EVGENLEDIIRNAKGRV------IVTTFASNIERIQ-TIIDAAEKLGRKVVVTGRSMERLIAIARRLGYLKLPDESFIEI 285 (555)
T ss_pred HHHHHHHHHHHHCCCCE------EEEECHHHHHHHH-HHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 99999999997389859------9997344689999-9999999809919998675999999876436422771022277
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 78999985199689981444354465899999999887630101244444432038788887899999999861047868
Q gi|254780442|r 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSA 374 (480)
Q Consensus 295 ~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~a 374 (480)
.++.+.--+ ..+.|. .|... |--..|.+++...-.+.........-........-+.......+.-...+++.
T Consensus 286 ~~~~~~~~~--~~lii~----TG~qg-ep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~g~~i 358 (555)
T COG0595 286 REVKRYPDE--EVLIIC----TGSQG-EPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKAGAKV 358 (555)
T ss_pred HHHCCCCCC--CEEEEE----ECCCC-CCHHHHHHHHCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 784325645--469999----28998-70666667645875312036898599961786984899999987998659688
Q ss_pred EEEE----CCCHHH-----HHHHHHHCCCC--CEEEEECCHHHHHHHHHHCCCEE
Q ss_conf 9997----088379-----99998418888--69999299899987666539379
Q gi|254780442|r 375 IFCY----TASGAT-----GLRAARERPKL--EIIALSPMIQTARRLALVWGIHC 418 (480)
Q Consensus 375 Iiv~----T~sG~t-----A~~iS~~RP~~--pIiaiT~~~~t~r~l~L~~GV~p 418 (480)
+-.- -.||.. -+++.-.||+. |+-.--+......++..-+|+.+
T Consensus 359 ~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la~~~G~~~ 413 (555)
T COG0595 359 ITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLAEEEGIPQ 413 (555)
T ss_pred EECCCCEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 5056642696688986999999996687635526886188999998888628876
No 139
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=64.86 E-value=8.5 Score=18.18 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECC
Q ss_conf 0478689997088379999984188----8869999299
Q gi|254780442|r 369 TLRLSAIFCYTASGATGLRAARERP----KLEIIALSPM 403 (480)
Q Consensus 369 ~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~ 403 (480)
++.++.+++-|-+|.||--+|.-=| .++.+++||-
T Consensus 131 ~~~~DGvIVSTPtGSTAYnlSAGGPIv~p~~~~l~lTPI 169 (246)
T PRK04761 131 ELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPI 169 (246)
T ss_pred EEEECEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 887078999569860787864699534899881899545
No 140
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=64.77 E-value=10 Score=17.62 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=32.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE
Q ss_conf 89998888898999999999999999749927999987898678
Q gi|254780442|r 33 VFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFR 76 (480)
Q Consensus 33 v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR 76 (480)
+.| ||---.+|.+++-++..+.+ .+++.||--++||+|.-.=
T Consensus 72 ~~r-nfGm~~PeGYRKA~Rlm~lA-ekf~~PvitfIDTpGA~pg 113 (256)
T PRK12319 72 LAR-NFGQPHPEGYRKALRLMKQA-EKFGRPVVTFINTAGAYPG 113 (256)
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCCCC
T ss_conf 204-69999817999999999999-9809987999607986788
No 141
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=64.18 E-value=10 Score=17.54 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=69.1
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHH----------------HEEEEE
Q ss_conf 532505855773479999986200---------3433555327856631178887533----------------124752
Q gi|254780442|r 188 VDWVALSFIQSADDLLEIRKIISQ---------NKIGLMSKIEKPRAIEYASEIIQLS----------------DAVMVA 242 (480)
Q Consensus 188 vD~ialSfVr~~~di~~~r~~l~~---------~~~~IiaKIE~~~al~nl~eI~~~s----------------Dgimia 242 (480)
+.-+-+|.+++++||.++--++++ ..+.|+.=-||.+.|+|-.+|++.- -.||+.
T Consensus 494 ig~YIISMt~~~SDvL~V~lL~keaGl~~~~~~~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlG 573 (916)
T PRK00009 494 IGQYIISMAETVSDVLEVLLLLKEAGLDDDAGRAPLRVVPLFETIEDLNNAADVMEQLLSLPWYRGLIAGRGNLQEVMLG 573 (916)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEC
T ss_conf 75776306787448999999999938867887888672054044899986799999996588999999718984999732
Q ss_pred CCC----CCHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 222----002158767368999999998513983998
Q gi|254780442|r 243 RGD----LGVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 243 RGD----Lg~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
=-| =|.=..-..+..+|+.+.+.|+++|-.+..
T Consensus 574 YSDS~KDgG~l~s~W~ly~Aq~~L~~v~~~~gv~l~~ 610 (916)
T PRK00009 574 YSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 610 (916)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 5666542334255689999999999999976993798
No 142
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=63.21 E-value=9.8 Score=17.70 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=50.7
Q ss_pred EEECCCCEEEEECC--CCCCCCC--CCC-CCCCCC--HHHCCCCCEEEE--ECCCEEECCCCCCCCEEEEEECCCCEEEC
Q ss_conf 89658999999532--4556444--221-266442--221133652674--06842210234454112455138808711
Q gi|254780442|r 85 VDLTEGQIFTLDNK--DSLGSSD--RVM-LPHPEI--FASIKIGDRLLI--DDGRVKLCVQEKGIGFIKCKVIAGISIAD 155 (480)
Q Consensus 85 i~l~~G~~v~l~~~--~~~~~~~--~i~-i~y~~l--~~~ik~Gd~I~i--dDG~i~l~V~~~~~~~i~c~V~~gG~l~s 155 (480)
+-++.|+++.|+.. +.+|..+ .+. ++-..| ...+++|..+.. ++|.+.++|+++.++.|+.--= -. ..
T Consensus 50 ~G~~~Gd~~~vtl~peeAYG~~de~lv~~vp~~~f~~~~~le~Gm~~~~~~~~G~~~~~V~eV~~~~VtvD~N--HP-LA 126 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGN--HM-LA 126 (196)
T ss_pred CCCCCCCEEEEEECHHHHCCCCCHHHEEEECHHHCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCEEEEECC--CC-CC
T ss_conf 7999997789997879916888979948825889687643456709988079984889999977998999589--87-78
Q ss_pred CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 456446785445556765567
Q gi|254780442|r 156 RKGISFPDTFLTTQALTQKDR 176 (480)
Q Consensus 156 ~Kgvnip~~~i~l~~ltekD~ 176 (480)
.|.++|--..+++-.-|+..+
T Consensus 127 Gk~L~F~VeVv~VReAT~EEi 147 (196)
T PRK10737 127 GQNLKFNVEVVAIREATEEEL 147 (196)
T ss_pred CCEEEEEEEEEEEECCCHHHH
T ss_conf 986799999998637999999
No 143
>TIGR00045 TIGR00045 glycerate kinase; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP.; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation.
Probab=63.17 E-value=7.7 Score=18.50 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=58.1
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 433555327856631178887533124752222002158767368999999998513983998057678
Q gi|254780442|r 213 KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLE 281 (480)
Q Consensus 213 ~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~le 281 (480)
+..+.+-||....+-|+++-++.+|-++...|-+--+.+.-|+|. -+.+.+.++++|||.-.--|.
T Consensus 265 ~a~l~pG~~~~~~~~~~~~~~~~adlv~tGeG~~D~q~~~Gk~P~---gva~~a~~~~~Pv~~~aG~l~ 330 (380)
T TIGR00045 265 GARLKPGIELVLELLNLEEKLKDADLVITGEGRLDSQSLFGKAPV---GVAKVAKKYGVPVIAIAGSLG 330 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHH---HHHHHHHHHCCCEEEEECCCC
T ss_conf 573443187887574178775015677862775232133576227---899887761897799822200
No 144
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=62.87 E-value=11 Score=17.38 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCCCC--CCCCHHHCC
Q ss_conf 989999999999999997499279999878986788654898189658999999532455644422126--644222113
Q gi|254780442|r 42 SHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLP--HPEIFASIK 119 (480)
Q Consensus 42 ~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~--y~~l~~~ik 119 (480)
..|+..+.++.+++++++.|.++ +..||| - ++==++|++++++- ..|. |+-+ .+--.++++
T Consensus 105 p~e~L~~iv~Sm~~~A~~aGV~i-V~GDTK-------V-----V~kG~~D~iFINTt-GiG~---~~~~~v~~~~~~~~~ 167 (345)
T TIGR02124 105 PIEDLERIVKSMAEAARKAGVKI-VAGDTK-------V-----VEKGKVDGIFINTT-GIGV---VPSGGVIDISAHNIQ 167 (345)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEE-EECCCC-------C-----CCCCCCCEEEEEEE-EEEE---ECCCCCCCCCCCCCC
T ss_conf 76789999999999999739768-975735-------3-----34577560588138-8888---747843376535414
Q ss_pred CCCEEEEEC
Q ss_conf 365267406
Q gi|254780442|r 120 IGDRLLIDD 128 (480)
Q Consensus 120 ~Gd~I~idD 128 (480)
+||.|++..
T Consensus 168 ~GD~Ii~sG 176 (345)
T TIGR02124 168 PGDVIIVSG 176 (345)
T ss_pred CCCEEEECC
T ss_conf 576689816
No 145
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.77 E-value=9.9 Score=17.69 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCH
Q ss_conf 10478689997088379999984188----88699992998
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPMI 404 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~ 404 (480)
++..++.+|+.|-+|.||--+|.--| .++.+.+||--
T Consensus 145 ~~~~~DGlIVSTPtGSTAYslSAGGPIv~P~l~~~~itPI~ 185 (264)
T PRK03501 145 ETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELA 185 (264)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEEEC
T ss_conf 98834779996798647857426995507997719998305
No 146
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=62.75 E-value=6.6 Score=18.97 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHCCCCCEECCCC-CCCCHHHHHHHHHHHCCCCEEEEEECCHHH------------------H-HH--
Q ss_conf 7655677899887348853250585-577347999998620034335553278566------------------3-11--
Q gi|254780442|r 171 LTQKDREDLHAALQTCEVDWVALSF-IQSADDLLEIRKIISQNKIGLMSKIEKPRA------------------I-EY-- 228 (480)
Q Consensus 171 ltekD~~di~~a~~~~~vD~ialSf-Vr~~~di~~~r~~l~~~~~~IiaKIE~~~a------------------l-~n-- 228 (480)
=++.|...+--++++-+.-.+-+-. -.+.+.++-+|++|++.... =+||.+| | +|
T Consensus 186 a~~~~i~~~~~~I~~Ak~PVlLlG~~aS~~~~~~Av~rll~k~~LP---vVeTfQgAG~vsrele~~TFfGRvGLFrNQ~ 262 (553)
T TIGR02418 186 AADADIDEVAEAIKNAKLPVLLLGLRASSQETTEAVRRLLKKTQLP---VVETFQGAGVVSRELEDETFFGRVGLFRNQP 262 (553)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC---CEEEEECCEEECHHCCCCCCEECCCCCCCCC
T ss_conf 7388999999999831996698504788889999999986460688---2140200513110024565210011445870
Q ss_pred HHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHH-HHHHHCCCCCHHHHHHHHHHH---HCC
Q ss_conf 7888753312475222200215876736899999999851398399805767-888828898403477899998---519
Q gi|254780442|r 229 ASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQML-ESMVTSPFPTRAEVSDVATAV---FEE 304 (480)
Q Consensus 229 l~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~l-eSM~~~p~PTRaEv~Dvanav---~dG 304 (480)
=|..|+.||=|+ +=|.=-+|+.++. =|+-+.--||.=-.. --.-++-.|.|==|.|||..+ ..-
T Consensus 263 GD~LLk~aDLvI-tIGYdPIEYep~~-----------WN~~~~~~Iv~iD~~~A~i~~~yqP~~eLvGdia~tl~~l~~~ 330 (553)
T TIGR02418 263 GDKLLKQADLVI-TIGYDPIEYEPRN-----------WNSELDATIVHIDVEPAEIDNNYQPDLELVGDIASTLDLLAER 330 (553)
T ss_pred CHHHHHHCCEEE-EECCCCEECCHHH-----------CCCCCCCEEEEEEEEEEEHHHCCCCCHHHHCCHHHHHHHHHHH
T ss_conf 025775669789-8338850307554-----------4778872068973144212003686144325727779999586
Q ss_pred CCE-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 968-99814443544658999999998876301012444444320--387888878999999998610478689997088
Q gi|254780442|r 305 ADA-IMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR--IEPNETGADVISSAARQIAETLRLSAIFCYTAS 381 (480)
Q Consensus 305 ~D~-imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~--~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~s 381 (480)
+.+ .-| |...-+.|...-.+.|............+ .+|. ++-+. |=..+.-+ .=+-+.=
T Consensus 331 ~~~~~~L---------~~~~~~~L~~l~~~~~~~~~~~~~~~~~~Gl~HPL-~ii~~-------~Q~~v~dD-~Tvt~D~ 392 (553)
T TIGR02418 331 VEGFYEL---------PEDAQDILEDLKQQIEELDEVKADLKQAHGLLHPL-EIIKA-------MQAIVTDD-VTVTVDI 392 (553)
T ss_pred HCCCCCC---------CHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCH-HHHHH-------HHHHCCCC-CEEEEEC
T ss_conf 2466105---------88899999999999986531787521068630538-89999-------99744898-1698704
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 379999984188886999929989998766653937999368799999999999999988887788779998522
Q gi|254780442|r 382 GATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGL 456 (480)
Q Consensus 382 G~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~ 456 (480)
| |+..|.+|++.=|.--+-+... .-+++=.|+=|+...-+++||.+||=|||.
T Consensus 393 G------------------ShyIWmARyf~Sy~AR~lLiSN----GmQTlGVALPWAI~AaLlrP~~KVVSVSGD 445 (553)
T TIGR02418 393 G------------------SHYIWMARYFKSYRARHLLISN----GMQTLGVALPWAIGAALLRPNTKVVSVSGD 445 (553)
T ss_pred C------------------HHHHHHHHHHCCCCCCEEEEEC----CCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 3------------------0588888762256754024335----750311121899999973889758998728
No 147
>PRK09255 malate synthase; Validated
Probab=62.58 E-value=11 Score=17.34 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=81.0
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHH---------------------
Q ss_conf 8853250585577347999998620---------0343355532785663117888753---------------------
Q gi|254780442|r 186 CEVDWVALSFIQSADDLLEIRKIIS---------QNKIGLMSKIEKPRAIEYASEIIQL--------------------- 235 (480)
Q Consensus 186 ~~vD~ialSfVr~~~di~~~r~~l~---------~~~~~IiaKIE~~~al~nl~eI~~~--------------------- 235 (480)
+.--|+-++-.++...-+--.+++. ...++...=|||.-|.-.+|||+-+
T Consensus 204 g~GpyfYLPKlEs~~EArlWndvF~~ae~~lglp~GTIkaTvLIETi~AaFeMeEILyeLR~h~~GLN~GRWDYifS~Ik 283 (531)
T PRK09255 204 GSGPYFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIVGLNCGRWDYIFSYIK 283 (531)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99865741234548899999999999999728998844788747554777627999999987653034551467899999
Q ss_pred -----HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH--HHHHHHH---------H
Q ss_conf -----31247522220021587673689999999985139839980576788882889840--3477899---------9
Q gi|254780442|r 236 -----SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTR--AEVSDVA---------T 299 (480)
Q Consensus 236 -----sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTR--aEv~Dva---------n 299 (480)
.|.++=+|..+++..|+ +-.+.+.+++.|++.|-..|=- |.- -.|.| .|+++.| -
T Consensus 284 ~f~~~~~~vlPDR~~vtM~~pF--m~aY~~llv~tCHkRGa~A~GG------MaA-~iP~k~d~~~n~~al~kV~~DK~r 354 (531)
T PRK09255 284 TLKNHPDFVLPDRQQVTMTKPF--MRAYSRLLIKTCHKRGAHAMGG------MAA-FIPIKNDPEANEAALAKVRADKER 354 (531)
T ss_pred HHCCCCCCCCCCHHHCCCCCHH--HHHHHHHHHHHHHCCCCCHHHC------CHH-CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8533866658971212668099--9999999999985238741102------201-063789867789999999987999
Q ss_pred HHHCCCCEEEEC
Q ss_conf 985199689981
Q gi|254780442|r 300 AVFEEADAIMLS 311 (480)
Q Consensus 300 av~dG~D~imLs 311 (480)
-+.+|.||-+..
T Consensus 355 Ea~~G~DGtWVA 366 (531)
T PRK09255 355 EANDGHDGTWVA 366 (531)
T ss_pred HHHCCCCCCEEC
T ss_conf 987498751321
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.29 E-value=10 Score=17.55 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=45.8
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHH----HHH--HH
Q ss_conf 610478689997088379999984188----88699992998999876665393799936879999999----999--99
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMV----NRA--CR 436 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i----~~a--~~ 436 (480)
..+..++.+|+.|-+|.||--+|.=-| .++.+.+||--. ..-...|+..+.....+-.+ +.+ .-
T Consensus 161 ~~~~~~DGlIvsTpTGSTAYslSAGGPIv~P~~~~~~itPI~p------hsL~~RplVv~~~~~I~i~~~~~~~~~~l~~ 234 (278)
T PRK03708 161 ADEVRADGLIISTPTGSTGYAMSAGGPFVDPRLDVILIAPLCP------FKLSSRPMVVPGSSRIDVKFLAKGREIILAI 234 (278)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEECCCC------CCCCCCCEEECCCCEEEEEEECCCCCEEEEE
T ss_conf 7899746799957874567455269952089987499966677------7677898898999879999916898479998
Q ss_pred HHHHCCCCCCCCEEEEEE
Q ss_conf 999888877887799985
Q gi|254780442|r 437 IVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 437 ~l~~~g~i~~GD~VVvv~ 454 (480)
-......+++||.|.+..
T Consensus 235 DG~~~~~l~~gd~v~I~~ 252 (278)
T PRK03708 235 DGQYYEELSPETEITIVK 252 (278)
T ss_pred CCCCEEECCCCCEEEEEE
T ss_conf 797306739999999998
No 149
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters .; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=62.14 E-value=6.2 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHCCCCEEEEEC
Q ss_conf 5799999999973997899988
Q gi|254780442|r 17 SFSEDVINRLHEEGTDVFRINM 38 (480)
Q Consensus 17 s~~~e~i~~l~~aG~nv~RiN~ 38 (480)
|.+|..+..|+++|+.+.++|-
T Consensus 83 f~~P~dv~~Lv~~Gv~i~~vNv 104 (152)
T TIGR00854 83 FKTPADVLTLVEGGVPIKTVNV 104 (152)
T ss_pred ECCCHHHHHHHHCCCCEEEEEE
T ss_conf 7392799899874862303432
No 150
>TIGR02168 SMC_prok_B chromosome segregation protein SMC; InterPro: IPR011890 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . The smc gene is often associated with scpB (IPR005234 from INTERPRO) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle , , .; GO: 0005515 protein binding, 0005524 ATP binding, 0005694 chromosome.
Probab=61.68 E-value=11 Score=17.23 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHH-HCCCCCEEEEEC---------CCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEE
Q ss_conf 789999999986-104786899970---------883799999841888869999299899987666539379
Q gi|254780442|r 356 ADVISSAARQIA-ETLRLSAIFCYT---------ASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418 (480)
Q Consensus 356 ~~aIa~aav~lA-~~l~a~aIiv~T---------~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p 418 (480)
..|+..-|.-.| ..++..=.|++= ..||.+.+|=.|.-....|.||+|..|.-..-.+|||+.
T Consensus 1106 EKALTA~ALlFAIf~~~P~PFC~LDEVDAPLDdaNV~RF~~ll~~~~~~tQFI~iTHnk~TM~~AD~L~GVTM 1178 (1191)
T TIGR02168 1106 EKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEMSKKTQFIVITHNKGTMEVADQLYGVTM 1178 (1191)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCEEE
T ss_conf 7999999999999600788726321233679826699999999998518927888678489998620336210
No 151
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=61.21 E-value=6.4 Score=19.08 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=53.6
Q ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCC
Q ss_conf 475222200215876736899999999851398399805767888828898403477899998519-9689981444354
Q gi|254780442|r 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE-ADAIMLSAETASG 317 (480)
Q Consensus 239 imiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG-~D~imLs~ETa~G 317 (480)
-++.||-|=.+++-.+++.++|+|-.==.+ |-.+|+-|..+------+++ +|+.| +|+|.|+|--|..
T Consensus 239 kI~G~GGl~ayLGTnD~reV~~~I~~GD~k-------A~~ildAMaYQiAKeIG~ma----vVL~G~VDAI~LTGGlAys 307 (353)
T TIGR02707 239 KIVGKGGLVAYLGTNDAREVEKKIEAGDEK-------AKLILDAMAYQIAKEIGKMA----VVLKGKVDAIILTGGLAYS 307 (353)
T ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCCE----EEECCCEEEEEECCCHHCC
T ss_conf 852674533254558888999999731088-------99999865458756774250----4003726689854601306
Q ss_pred CC-HHHHH
Q ss_conf 46-58999
Q gi|254780442|r 318 SY-PVDAV 324 (480)
Q Consensus 318 ~y-P~~~v 324 (480)
++ =++-+
T Consensus 308 ~~f~v~~I 315 (353)
T TIGR02707 308 KYFFVSEI 315 (353)
T ss_pred CCHHHHHH
T ss_conf 20455877
No 152
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=60.36 E-value=12 Score=17.07 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEE-EEE
Q ss_conf 999999999988887788779998-522
Q gi|254780442|r 430 MVNRACRIVVEQGFGKPGDRIIIS-AGL 456 (480)
Q Consensus 430 ~i~~a~~~l~~~g~i~~GD~VVvv-~G~ 456 (480)
.+..+++.+++ ..+++.||++ +|.
T Consensus 333 avA~~~kla~~---~~~~~~VV~~ltG~ 357 (365)
T cd06446 333 AIAYAIKLAKK---LGKEKVIVVNLSGR 357 (365)
T ss_pred HHHHHHHHHHH---CCCCCEEEEEECCC
T ss_conf 99999999877---49998799995789
No 153
>KOG2178 consensus
Probab=60.22 E-value=10 Score=17.63 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=51.4
Q ss_pred HHHHCCCCCEEEEECCCHHHHHHHH----HHCCCCCEEEEEC---CHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHHHH
Q ss_conf 9861047868999708837999998----4188886999929---9899987666539379-993687999999999999
Q gi|254780442|r 365 QIAETLRLSAIFCYTASGATGLRAA----RERPKLEIIALSP---MIQTARRLALVWGIHC-VVTEDASDSDDMVNRACR 436 (480)
Q Consensus 365 ~lA~~l~a~aIiv~T~sG~tA~~iS----~~RP~~pIiaiT~---~~~t~r~l~L~~GV~p-~~~~~~~~~~~~i~~a~~ 436 (480)
++-..+.++..|+.|.||.||--+| -..|.+|-+.+|| +.--+|=.-|=-++.- +.++ .+.....-.+++
T Consensus 279 ~~iT~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPICPhSLSFRPIIlPds~~L~I~i~--~dsR~~awvSfD 356 (409)
T KOG2178 279 KLITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPICPHSLSFRPIILPDSSELRVEVP--LDSRSTAWVSFD 356 (409)
T ss_pred CEEEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEEC--CCCCCCCEEEEC
T ss_conf 079999616699966886156476449954469977489824688765656667268667999957--654656058765
Q ss_pred HHHHCCCCCCCCEEEEEE-EECCCC
Q ss_conf 999888877887799985-222788
Q gi|254780442|r 437 IVVEQGFGKPGDRIIISA-GLPLGT 460 (480)
Q Consensus 437 ~l~~~g~i~~GD~VVvv~-G~p~~~ 460 (480)
.+.+.-...||.+-+++ .+|+..
T Consensus 357 -G~~r~El~~GD~i~I~tS~ypfPt 380 (409)
T KOG2178 357 -GRPRQELSLGDYIDITTSRYPFPT 380 (409)
T ss_pred -CCCHHHCCCCCEEEEEECCCCCCE
T ss_conf -850544368855999864677760
No 154
>PRK08462 biotin carboxylase; Validated
Probab=60.13 E-value=12 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 879999999999999998
Q gi|254780442|r 423 DASDSDDMVNRACRIVVE 440 (480)
Q Consensus 423 ~~~~~~~~i~~a~~~l~~ 440 (480)
+..+.++.+......|.+
T Consensus 393 ~g~~R~~Ai~rl~~aL~e 410 (446)
T PRK08462 393 WGEDRNRAIAKMKRALDE 410 (446)
T ss_pred ECCCHHHHHHHHHHHHHC
T ss_conf 899999999999999844
No 155
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=59.89 E-value=12 Score=17.01 Aligned_cols=178 Identities=21% Similarity=0.182 Sum_probs=91.0
Q ss_pred CEEEE---EECC---HHHHHHHHHHHHH-----HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
Q ss_conf 33555---3278---5663117888753-----31247522220021587673689999999985139839980576788
Q gi|254780442|r 214 IGLMS---KIEK---PRAIEYASEIIQL-----SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLES 282 (480)
Q Consensus 214 ~~Iia---KIE~---~~al~nl~eI~~~-----sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leS 282 (480)
.-|+| ++|. ..+++|+++++.. .|+++.-+|=+..--+. ....+|.|+ .|.+
T Consensus 24 ~~i~a~DhGv~~g~p~~gl~d~e~~v~~~~~~g~dav~~~~Gi~~~~~~~--------------y~~dvpliv---kl~~ 86 (265)
T COG1830 24 LLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHRG--------------YAHDVPLIV---KLNG 86 (265)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHCCCC--------------CCCCCCEEE---EECC
T ss_conf 89995355511588763426999999999854899898467588650755--------------357767799---9646
Q ss_pred HHHCCCCC-HH--HHHHHHHHHHCCCCEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCHHH----HHHHHHHCCCCCCC
Q ss_conf 88288984-03--47789999851996899814443544-6589999999988763010124----44444320387888
Q gi|254780442|r 283 MVTSPFPT-RA--EVSDVATAVFEEADAIMLSAETASGS-YPVDAVRTMSLVASSAERDSSW----LEMRSLRRIEPNET 354 (480)
Q Consensus 283 M~~~p~PT-Ra--Ev~Dvanav~dG~D~imLs~ETa~G~-yP~~~v~~~~~i~~~~E~~~~~----~~~~~~~~~~~~~~ 354 (480)
+ ++-.|+ +- -++.|-.|+.-|+||+--. -.+|. +--+.++.+.++...+..+-.- ...+........+.
T Consensus 87 ~-t~l~~~~~~~~~~~~ve~ai~lgadAV~~~--Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~ 163 (265)
T COG1830 87 S-TSLSPDPNDQVLVATVEDAIRLGADAVGAT--VYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHR 163 (265)
T ss_pred C-CCCCCCCCCCEEEEEHHHHHHCCCCEEEEE--EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 6-656778643112340988974787479999--9668762589999999999999870996499881358776544433
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHCCCCCEE-EEECCH-HHHHHHHHHC
Q ss_conf 8789999999986104786899970883--7999998418888699-992998-9998766653
Q gi|254780442|r 355 GADVISSAARQIAETLRLSAIFCYTASG--ATGLRAARERPKLEII-ALSPMI-QTARRLALVW 414 (480)
Q Consensus 355 ~~~aIa~aav~lA~~l~a~aIiv~T~sG--~tA~~iS~~RP~~pIi-aiT~~~-~t~r~l~L~~ 414 (480)
..+.+++++ .+|.+++|+ ||=--.+| .+=+.+-+.=| +|++ +--+.. ...--|...|
T Consensus 164 d~~~v~~aa-RlaaelGAD-IiK~~ytg~~e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~ 224 (265)
T COG1830 164 DADLVGYAA-RLAAELGAD-IIKTKYTGDPESFRRVVAACG-VPVVIAGGPKTETEREFLEMVT 224 (265)
T ss_pred CHHHHHHHH-HHHHHHCCC-EEEECCCCCHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHH
T ss_conf 689999999-999986577-686159998478999997189-9879847988897499999999
No 156
>PRK09389 (R)-citramalate synthase; Provisional
Probab=59.67 E-value=12 Score=16.99 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=3.7
Q ss_pred HHHHHHCCCC
Q ss_conf 9999973997
Q gi|254780442|r 23 INRLHEEGTD 32 (480)
Q Consensus 23 i~~l~~aG~n 32 (480)
|...+++|+.
T Consensus 78 i~~~~~a~~~ 87 (487)
T PRK09389 78 IDAALECDVD 87 (487)
T ss_pred HHHHHHCCCC
T ss_conf 9999857979
No 157
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=59.19 E-value=12 Score=17.01 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=32.6
Q ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCH
Q ss_conf 8610478689997088379999984188----88699992998
Q gi|254780442|r 366 IAETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPMI 404 (480)
Q Consensus 366 lA~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~ 404 (480)
......++.+++-|.+|.||--+|..=| ..+.+++||--
T Consensus 160 ~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~ 202 (281)
T COG0061 160 FFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPIC 202 (281)
T ss_pred EEEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 9999986899991898677786307996069998869998457
No 158
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=59.14 E-value=13 Score=16.93 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=60.0
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCHHHHHHHH-HHHCCCCEEEEEECCHHHHHHHHHHHHHHHE-------EEEECCCCCH
Q ss_conf 7899887348853250585577347999998-6200343355532785663117888753312-------4752222002
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRK-IISQNKIGLMSKIEKPRAIEYASEIIQLSDA-------VMVARGDLGV 248 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~di~~~r~-~l~~~~~~IiaKIE~~~al~nl~eI~~~sDg-------imiaRGDLg~ 248 (480)
...+++ .. -+||. ++--.-..-.-|+|. -+..+....+.--.|..|-+||+|....+.. ..+.|+|-..
T Consensus 107 ~EvkyG-nS-RiDfl-l~~~~~~~~~vEVK~vtL~~~~~a~FPDApT~RG~KHLreL~~~~~~G~ra~vlf~v~r~d~~~ 183 (235)
T COG1489 107 REVKYG-NS-RIDFL-LDDDERPDCYVEVKSVTLVENGVAMFPDAPTARGQKHLRELERLAKEGYRAVVLFLVLRSDITR 183 (235)
T ss_pred EECCCC-CE-EEEEE-ECCCCCCCEEEEEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCE
T ss_conf 001106-61-58999-7589887359998347875188897899852336779999999997077469999993489758
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 158767368999999998513983998
Q gi|254780442|r 249 EMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 249 e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
--|-.++=-.=-+..+.+.+.|--|+.
T Consensus 184 F~P~~e~Dp~fa~~l~~A~~~GVev~~ 210 (235)
T COG1489 184 FSPNREIDPKFAELLREAIKAGVEVLA 210 (235)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 873301498899999999975978999
No 159
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=59.10 E-value=13 Score=16.92 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=38.6
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999739978999888889899999999999999974992
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~ 63 (480)
-.+.+++++++|++++-+-.-+.+.++..+..+.++.+.++.+..
T Consensus 14 ~~~~~~~~l~~Gv~~vqlR~K~~~~~~~~~~a~~l~~i~~~~~~~ 58 (180)
T pfam02581 14 LLEVVEEALKGGVTIVQLREKDLDDRELLELAERLRALCRKYGVP 58 (180)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 999999999869999998789879999999999999999982997
No 160
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=59.08 E-value=13 Score=16.92 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=8.7
Q ss_pred HHHCCCEEEEEHHHHH
Q ss_conf 8513983998057678
Q gi|254780442|r 266 ARQLGKPVVIATQMLE 281 (480)
Q Consensus 266 ~~~~~kpvivATq~le 281 (480)
++..|+|.++-+....
T Consensus 403 aRe~g~Pavvg~~~~~ 418 (740)
T COG0574 403 ARELGIPAVVGTGSAT 418 (740)
T ss_pred HHHCCCCEEECCCHHH
T ss_conf 7743987497573254
No 161
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=58.78 E-value=13 Score=16.88 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999998513-9839980576788882889840347789999851996899814--443544658999999998876
Q gi|254780442|r 257 GIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA--ETASGSYPVDAVRTMSLVASS 333 (480)
Q Consensus 257 ~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~--ETa~G~yP~~~v~~~~~i~~~ 333 (480)
.-+-++|..+|-. =|--|.++ -++|+-.+-. .+.+.+-|++++|.+. .|.-|.-+.+-.+.+.++-.+
T Consensus 248 ~e~lk~IA~~Ri~~P~~~Ir~s--------~gr~~~~~~~-q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~ 318 (335)
T COG0502 248 FEFLKTIAVARIIMPKSMIRLS--------AGRETMLPEL-QALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLE 318 (335)
T ss_pred HHHHHHHHHHHHHCCCCEEECC--------CCCCCCCHHH-HHHHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9999999999997786456725--------8835225888-999998456635652447624899803689999973887
Q ss_pred HH
Q ss_conf 30
Q gi|254780442|r 334 AE 335 (480)
Q Consensus 334 ~E 335 (480)
.|
T Consensus 319 ~e 320 (335)
T COG0502 319 PE 320 (335)
T ss_pred CC
T ss_conf 21
No 162
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=58.51 E-value=13 Score=16.85 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCEEEEECCCCCCC----HHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 52699941877579----99999999739-9789998888898999999999999999749927
Q gi|254780442|r 6 RIKIISTLGPSSFS----EDVINRLHEEG-TDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 (480)
Q Consensus 6 ktKIi~TlGPas~~----~e~i~~l~~aG-~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i 64 (480)
++++.= +-|...+ .+.++..+++| +.++++-..+.+..+..+..+.+|.+..+.+.++
T Consensus 12 ~~rLYL-ITP~~~d~~~~~~~l~~aL~~g~Va~vqlR~k~~d~~~~~~~a~~L~~lc~~~gv~l 74 (221)
T PRK06512 12 RCRIVL-VAPPIADGAALAKLLRAALSGGDVASVILPDYGLDEATFQKQAEKYVPVIQEAGAAA 74 (221)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 875899-789974667899999999846985599975799999999999999999999829919
No 163
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=58.12 E-value=12 Score=17.09 Aligned_cols=35 Identities=3% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
-+-|++++++.+.|+++ ..+||.|+.-+.++.+++
T Consensus 25 y~~CFvGsElVdWLi~~~~~~~R~eAv~lgq~Lle~ 60 (82)
T cd04442 25 YPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDH 60 (82)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 874327289999999867889999999999999878
No 164
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.88 E-value=12 Score=17.04 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=30.3
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECC
Q ss_conf 610478689997088379999984188----8869999299
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPM 403 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~ 403 (480)
..+..++.+|+.|-+|.||--+|.--| .++.+++||-
T Consensus 151 ~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~itPI 191 (272)
T PRK02231 151 AFSQRSDGLIVSTPTGSTAYSLSAGGPILTPQLNAIALVPM 191 (272)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEEC
T ss_conf 89984687999578745674553699532799872899867
No 165
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=57.65 E-value=13 Score=16.75 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCC-HHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 0478689997088-3799999841888869999299899
Q gi|254780442|r 369 TLRLSAIFCYTAS-GATGLRAARERPKLEIIALSPMIQT 406 (480)
Q Consensus 369 ~l~a~aIiv~T~s-G~tA~~iS~~RP~~pIiaiT~~~~t 406 (480)
..+|.+.-+|-+. |.-.+++|-+++.-+++.+-.+.++
T Consensus 258 RVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~ 296 (376)
T COG1465 258 RVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRT 296 (376)
T ss_pred EECCCCEEEEEECCCCCEEEHHHHCCCCEEEEEECCCCE
T ss_conf 421553269999479964772340699869999368956
No 166
>PRK08116 hypothetical protein; Validated
Probab=57.57 E-value=13 Score=16.74 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHH
Q ss_conf 73488532505855773479999986200343355532785663117888753312475222200215876736899999
Q gi|254780442|r 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKL 262 (480)
Q Consensus 183 ~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~i 262 (480)
+++ ++..+ |+..++-+.++|.-..+.. .+....+-+-+..+|-++|+ |||.|-+-+-.-..-=.|
T Consensus 133 ~~~-g~~V~---~~~~~~ll~~lk~~~~~~~---------~~~~~e~l~~l~~~dLLIiD--DlG~e~~t~w~~e~lf~I 197 (262)
T PRK08116 133 IEK-GVPVV---FVNVPELLNRIKSTYNSEG---------KEDENEIIRALDNADLLILD--DLGAEKDTEWVREKLYNI 197 (262)
T ss_pred HHC-CCEEE---EEEHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHCCCEEEEE--HHCCCCCCHHHHHHHHHH
T ss_conf 987-99399---9889999999999986356---------10199999986129989983--221456987899999999
Q ss_pred HHHHHHCCCEEEEEHHHHHH
Q ss_conf 99985139839980576788
Q gi|254780442|r 263 IRIARQLGKPVVIATQMLES 282 (480)
Q Consensus 263 i~~~~~~~kpvivATq~leS 282 (480)
|..-...+||.|+.|++--+
T Consensus 198 In~Ry~~~kptIiTTNl~~~ 217 (262)
T PRK08116 198 IDSRYRKGLPTIFTTNLSLE 217 (262)
T ss_pred HHHHHHCCCCEEEECCCCHH
T ss_conf 99999769998998799999
No 167
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=57.10 E-value=13 Score=16.71 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEE
Q ss_conf 4422211336526740684221023445411245513880871
Q gi|254780442|r 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIA 154 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~ 154 (480)
.++...+++||+|....|.+- +|.+++++.+..++-.|-.++
T Consensus 48 ~~m~~~L~~Gd~VvT~gGi~G-~I~~v~d~~v~leia~gv~i~ 89 (107)
T PRK05585 48 KKMLSSLAKGDEVVTNGGIIG-KVTKVSEDFVIIELNDDTEIK 89 (107)
T ss_pred HHHHHHCCCCCEEEECCCCEE-EEEEEECCEEEEEECCCCEEE
T ss_conf 999984589999998998589-999997998999988995899
No 168
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=56.75 E-value=14 Score=16.65 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=22.6
Q ss_pred EECCCHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 970883799999841888-86999929989998766653937999
Q gi|254780442|r 377 CYTASGATGLRAARERPK-LEIIALSPMIQTARRLALVWGIHCVV 420 (480)
Q Consensus 377 v~T~sG~tA~~iS~~RP~-~pIiaiT~~~~t~r~l~L~~GV~p~~ 420 (480)
+|=.+|.|+..++++-|. .++-.+|++..++..|.-..++.-++
T Consensus 95 I~lD~GTT~~~la~~L~~~~~ltVvTnsl~ia~~L~~~~~~~vil 139 (252)
T PRK10906 95 LFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIIL 139 (252)
T ss_pred EEECCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCEEEE
T ss_conf 998786379999853336798699989899999998489964998
No 169
>pfam02699 YajC Preprotein translocase subunit. See.
Probab=56.61 E-value=14 Score=16.66 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEE
Q ss_conf 442221133652674068422102344541124551388087
Q gi|254780442|r 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISI 153 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l 153 (480)
.++.+.+++||+|....|-+- +|.+++++.+.-++-.|-.+
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~G-~V~~i~~~~v~lei~~gv~i 72 (83)
T pfam02699 32 KEMLSSLKKGDEVVTIGGIHG-KIVKVDDDTVVLEIADGVKV 72 (83)
T ss_pred HHHHHHCCCCCEEEECCCEEE-EEEEEECCEEEEEECCCCEE
T ss_conf 999985789999998997199-99999799999998899399
No 170
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=56.46 E-value=13 Score=16.73 Aligned_cols=35 Identities=9% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
-+-|++++++.+.++++ ..+||.|+....++.+++
T Consensus 29 y~~cF~GselVdWLv~~~~~~sR~eAv~lgq~Lle~ 64 (85)
T cd04441 29 YERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEH 64 (85)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 575117078999998778889999999999999868
No 171
>PRK05638 threonine synthase; Validated
Probab=56.40 E-value=14 Score=16.61 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=7.7
Q ss_pred HHHHHHHCCCCCCCCEEEE
Q ss_conf 9999998888778877999
Q gi|254780442|r 434 ACRIVVEQGFGKPGDRIII 452 (480)
Q Consensus 434 a~~~l~~~g~i~~GD~VVv 452 (480)
++..+.++|.++++|.||+
T Consensus 332 gl~kl~e~G~I~~~e~VV~ 350 (443)
T PRK05638 332 ALLKLVETGFIEKGDRVVL 350 (443)
T ss_pred HHHHHHHCCCCCCCCEEEE
T ss_conf 9999997699899992999
No 172
>pfam04312 DUF460 Protein of unknown function (DUF460). Archaeal protein of unknown function.
Probab=56.20 E-value=8.7 Score=18.10 Aligned_cols=25 Identities=44% Similarity=0.813 Sum_probs=17.0
Q ss_pred HHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH
Q ss_conf 9999985139839980576788882889840
Q gi|254780442|r 261 KLIRIARQLGKPVVIATQMLESMVTSPFPTR 291 (480)
Q Consensus 261 ~ii~~~~~~~kpvivATq~leSM~~~p~PTR 291 (480)
.+|..-.++|+|+|+||.+ +|.|.-
T Consensus 67 evi~~I~~~G~PviVAtDV------~p~P~~ 91 (138)
T pfam04312 67 EVIELIYELGKPVIVATDV------SPPPET 91 (138)
T ss_pred HHHHHHHHCCCEEEEEECC------CCCCHH
T ss_conf 9999999749769998269------898289
No 173
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=56.15 E-value=14 Score=16.58 Aligned_cols=149 Identities=16% Similarity=0.259 Sum_probs=66.3
Q ss_pred CHHHCCCCCEEEEECCCEEECCCCCCCCEE-EEEECCCC----EEECCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 222113365267406842210234454112-45513880----871145644--67854455567655677899887348
Q gi|254780442|r 114 IFASIKIGDRLLIDDGRVKLCVQEKGIGFI-KCKVIAGI----SIADRKGIS--FPDTFLTTQALTQKDREDLHAALQTC 186 (480)
Q Consensus 114 l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i-~c~V~~gG----~l~s~Kgvn--ip~~~i~l~~ltekD~~di~~a~~~~ 186 (480)
-...+++||.|++|.|.-.+.+.+.=.+.- ...|.++= .|..+.+++ +.|..+.-...+--.-....+ +++.
T Consensus 100 Aa~lI~~gd~I~lD~GTT~~~la~~L~~~~~ltVvTNsl~ia~~L~~~~~~~vil~GG~~~~~~~s~~G~~a~~~-l~~~ 178 (269)
T PRK09802 100 AVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQS-LQNY 178 (269)
T ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCCEECHHHHHH-HHHC
T ss_conf 998689999999778679999997323269859997879999999728996799748877067772667899999-9836
Q ss_pred CCCEECCC----------CCCCCHHHHHHHHHHHCCC-CEEEE---EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCH
Q ss_conf 85325058----------5577347999998620034-33555---3278566311788875331247522220021587
Q gi|254780442|r 187 EVDWVALS----------FIQSADDLLEIRKIISQNK-IGLMS---KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMAL 252 (480)
Q Consensus 187 ~vD~ialS----------fVr~~~di~~~r~~l~~~~-~~Iia---KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~ 252 (480)
.+|...+| +..+.++..--|..+...+ .-+++ |+....-.+-.+ +...|.++-+.+ +|
T Consensus 179 ~~d~aFlg~~gi~~~~G~t~~~~~ea~~kr~~i~~a~~~illaD~sKf~~~~~~~~~~--l~~id~lITD~~-----~~- 250 (269)
T PRK09802 179 HFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIID--TQRIDMIIVDEG-----IP- 250 (269)
T ss_pred CCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCEEEEEC--HHHCCEEEECCC-----CC-
T ss_conf 6899998476655899757399999999999999559799998632528802179858--799999998939-----99-
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf 67368999999998513983998057
Q gi|254780442|r 253 ELIPGIQKKLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 253 e~vp~~Qk~ii~~~~~~~kpvivATq 278 (480)
..++..++++|..||+|.|
T Consensus 251 -------~~~~~~l~~~gv~vivv~e 269 (269)
T PRK09802 251 -------ADSLEGLRKAGVEVILVGE 269 (269)
T ss_pred -------HHHHHHHHHCCCEEEEECC
T ss_conf -------9999999987998999379
No 174
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=55.88 E-value=14 Score=16.55 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=13.8
Q ss_pred HHCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 734885325058557734799999862
Q gi|254780442|r 183 LQTCEVDWVALSFIQSADDLLEIRKII 209 (480)
Q Consensus 183 ~~~~~vD~ialSfVr~~~di~~~r~~l 209 (480)
++..+.|+|-+..-.+.+.+.++|..+
T Consensus 71 ~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 71 AEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf 983399889988989999999998534
No 175
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.75 E-value=14 Score=16.56 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHC----CCCCEEEEECC
Q ss_conf 61047868999708837999998418----88869999299
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARER----PKLEIIALSPM 403 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~~ 403 (480)
.....++.+|+-|-+|.||--+|.-= |.++.+.+||-
T Consensus 176 ~~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~~~ltPI 216 (296)
T PRK04539 176 VYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPI 216 (296)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEC
T ss_conf 99997476999678745676652699530799872899605
No 176
>PRK08417 dihydroorotase; Provisional
Probab=55.61 E-value=14 Score=16.52 Aligned_cols=221 Identities=11% Similarity=0.091 Sum_probs=103.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEC-----CCCCCCCHHHHHHHHHHHCCCCEEE---EEECCHHHHHHHHHHHHHH
Q ss_conf 4455567655677899887348853250-----5855773479999986200343355---5327856631178887533
Q gi|254780442|r 165 FLTTQALTQKDREDLHAALQTCEVDWVA-----LSFIQSADDLLEIRKIISQNKIGLM---SKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 165 ~i~l~~ltekD~~di~~a~~~~~vD~ia-----lSfVr~~~di~~~r~~l~~~~~~Ii---aKIE~~~al~nl~eI~~~s 236 (480)
++.-|.++.+|.+--.-|+-.+|+-.|. .+-+.+.+.++.+++...+....++ .-......+..+.++...
T Consensus 38 H~~~~~~~~~d~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 116 (387)
T PRK08417 38 RVKNDKLSLKNLKLLANEALKGGIGSIVLRPDSTPSIDNEISLELILSNLAELPMQIFPSISALDKEGKLSNIAILLKK- 116 (387)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHC-
T ss_conf 7899997743599999999846878999898899999998999999987305783289999971588516779999877-
Q ss_pred HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 12475222200215876736899999999851398399805767888828898403477899998519968998144435
Q gi|254780442|r 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETAS 316 (480)
Q Consensus 237 DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~ 316 (480)
|+. +...+...-+....++.+.+...+.|+++-.+ -.++.+ .++|..++++
T Consensus 117 -g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~h~e---------------d~~l~~------~~~~~~g~~~- 167 (387)
T PRK08417 117 -GAK------AIYLDSSLDANLLKRIAQYAQMLDVPIFCRCE---------------DSSFRD------SGVMNDGELS- 167 (387)
T ss_pred -CCE------EEECCCCCCHHHHHHHHHHHHHCCCEEEEECC---------------CHHHHH------HHHHHCCCCC-
T ss_conf -958------99658889869999999988862977999069---------------989974------0687558633-
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC-C
Q ss_conf 446589999999988763010124444443203878888789999999986104786899970883799999841888-8
Q gi|254780442|r 317 GSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK-L 395 (480)
Q Consensus 317 G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~-~ 395 (480)
+... ....|...-..++.+ +..+|...+++.-++...|+.+..++.+.|-+ .
T Consensus 168 -----------------------~~~~---l~~~P~~aE~~av~r-~i~la~~~~~~~hi~HiSt~~~l~~i~~ak~~G~ 220 (387)
T PRK08417 168 -----------------------FELG---LPGIPKLSETKEVAK-MIELAKFYKIKVLFDALSLPRSLELIDKARSEGP 220 (387)
T ss_pred -----------------------HHCC---CCCCCHHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC
T ss_conf -----------------------1007---998987999999999-9999997299659997244566777899875487
Q ss_pred CEEEEE-CCHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 699992-9989998766-653937999368799999999999999988887
Q gi|254780442|r 396 EIIALS-PMIQTARRLA-LVWGIHCVVTEDASDSDDMVNRACRIVVEQGFG 444 (480)
Q Consensus 396 pIiaiT-~~~~t~r~l~-L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i 444 (480)
+|.+=| |+.-++..-. --+|......|+..+.++ +.++--+...|.+
T Consensus 221 ~it~Et~phhL~l~~~~~~~~~~~~k~~PPLR~~~d--~~aLw~~l~~G~I 269 (387)
T PRK08417 221 NVFAEVSIHHLILDDSSCKGFNTAAKLNPPLRSKED--RLALREALKEGKI 269 (387)
T ss_pred EEEEEECHHHHHCCHHHHHCCCCCEEEECCCCCHHH--HHHHHHHHHCCCC
T ss_conf 265554187774799776366885076189989899--9999999747998
No 177
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=55.41 E-value=14 Score=16.50 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHCCCEE----EEECCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEEEE-EECCCCCCCCCEEE
Q ss_conf 99899987666539379----99368799-9999999999999888877887799985-22278888641599
Q gi|254780442|r 402 PMIQTARRLALVWGIHC----VVTEDASD-SDDMVNRACRIVVEQGFGKPGDRIIISA-GLPLGTPGSTNMLR 468 (480)
Q Consensus 402 ~~~~t~r~l~L~~GV~p----~~~~~~~~-~~~~i~~a~~~l~~~g~i~~GD~VVvv~-G~p~~~~G~TN~ir 468 (480)
.+.+..+++.=.-|+-+ ..++...+ ....+-.++..+.+.|.+++||+|++++ |. |.+.++-.+|
T Consensus 256 ~n~~~~~~v~~~lgl~~ek~~~~~~~~GNt~sAsipiaL~~a~~~g~l~~Gd~vll~g~G~--G~s~g~~~~~ 326 (327)
T PRK05963 256 ANARIVDKVCETLGIPRAKAASTIETYGNSSAATIPLSLSLANLEQPLREGERLLFAAAGA--GMTGGAVVMQ 326 (327)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEH--HHHHHHHEEE
T ss_conf 9989999999982979787030275139248889999999999829999979999999866--8635451265
No 178
>pfam08541 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.
Probab=55.07 E-value=14 Score=16.46 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999999999999888877887799985
Q gi|254780442|r 426 DSDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 426 ~~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
-....+-.++..+.+.|.+++||.|++++
T Consensus 48 ~~sasip~~L~~~~~~~~i~~Gd~vll~~ 76 (90)
T pfam08541 48 TSAASIPLALDEAVEEGKLKPGDLVLLVG 76 (90)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 62023999999999819999999899998
No 179
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=54.99 E-value=15 Score=16.45 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 9987666539379993687999-999999999999888877887799985
Q gi|254780442|r 406 TARRLALVWGIHCVVTEDASDS-DDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 406 t~r~l~L~~GV~p~~~~~~~~~-~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
++++|.+-.--.+..++.+.++ ...+-.++..+.+.|.+++||+|++++
T Consensus 276 i~~~Lgi~~ek~~~~~~~~GNT~sASiPlaL~~a~~~g~ik~Gd~vll~~ 325 (339)
T PRK09258 276 VLKALGIDPEKVFPTFPLLGNMGPVSLPITLAMAAEQGFLKKGDRVALLG 325 (339)
T ss_pred HHHHCCCCHHHHHCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99981968777103186458689899999999999829999979999998
No 180
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.94 E-value=15 Score=16.45 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.3
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECC
Q ss_conf 610478689997088379999984188----8869999299
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPM 403 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~ 403 (480)
-.+..++.+|+-|-+|.||--+|.--| ..+.+.+||-
T Consensus 153 ~~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~i~ltPI 193 (272)
T PRK01185 153 LETTKSDGVIVATPIGSSSYSSSAGGPLLLPTLNGMVISYL 193 (272)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 67996466999678843788976699422799884999816
No 181
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=54.70 E-value=15 Score=16.42 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCCCCCCEEEEECCCCC---CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 97777526999418775---79999999997399789998888898999999999999999749927
Q gi|254780442|r 1 MVNLRRIKIISTLGPSS---FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64 (480)
Q Consensus 1 ~~~mrktKIi~TlGPas---~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i 64 (480)
|..+|-..|..=-.|.- .=.+.+++++++|++++-+-.-+.+.++..+.+..++++..+.+.++
T Consensus 1 ~~~~~~~glYlIT~~~~~~~~~~~~~~~~l~~Gv~~vQlR~K~~~~~~~~~~a~~l~~i~~~~~~~l 67 (210)
T PRK00043 1 MFMMKLLGLYLITDSRDSTGDLLEVVEAALAGGVTLVQLREKGADARERLELARALKALCRRYGVPL 67 (210)
T ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 9865308089991985345549999999998699999992699899999999999999999809959
No 182
>PRK06256 biotin synthase; Validated
Probab=54.32 E-value=15 Score=16.38 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=5.4
Q ss_pred HHCCCEEEEEC
Q ss_conf 65393799936
Q gi|254780442|r 412 LVWGIHCVVTE 422 (480)
Q Consensus 412 L~~GV~p~~~~ 422 (480)
+..|+.++.+-
T Consensus 289 ~~~gan~~~~G 299 (325)
T PRK06256 289 ALKGANSIFVG 299 (325)
T ss_pred HHHHCHHHEEC
T ss_conf 98617351466
No 183
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=54.24 E-value=15 Score=16.37 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH----HHHCCCCCHHH
Q ss_conf 20021587673689999999985139839980576788----88288984034
Q gi|254780442|r 245 DLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLES----MVTSPFPTRAE 293 (480)
Q Consensus 245 DLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leS----M~~~p~PTRaE 293 (480)
||.+..+-+ +-..+.++.++++.+|-.+|+|||=-.. ++....|||-+
T Consensus 650 dlm~~~~k~-ve~~i~rLa~~ara~GIHlilatqRps~dVit~ikan~psrIa 701 (858)
T COG1674 650 DLMMVAGKE-LEELIARLAQKGRAAGIHLILATQRPSVDVITGIKANIPTRIA 701 (858)
T ss_pred HHHCCCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCEE
T ss_conf 886123176-9999999999787658269997489995040888853875256
No 184
>TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function..
Probab=54.18 E-value=14 Score=16.55 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCCHHHCCCCCEEEEECCCEEECCCCCCCCE--EEEEECCCCEEECCC
Q ss_conf 4422211336526740684221023445411--245513880871145
Q gi|254780442|r 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGF--IKCKVIAGISIADRK 157 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~--i~c~V~~gG~l~s~K 157 (480)
.++.+.+++||+|+...|-+- +|.++.++. +.-+.-.++.+.=.|
T Consensus 32 ~kl~~~L~KGd~V~T~gGi~G-~V~~i~e~~~~i~i~~~~~t~~~~~K 78 (86)
T TIGR00739 32 KKLIESLKKGDKVLTIGGIIG-TVTKIAENTNNIVIELNDNTEITFSK 78 (86)
T ss_pred HHHHHCCCCCCEEEECCCEEE-EEEEEECCCCEEEEEECCCCEEEEEH
T ss_conf 888852799778998388389-99885238867899987994899860
No 185
>PRK05636 replicative DNA helicase; Provisional
Probab=54.09 E-value=15 Score=16.35 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8767368999999998513983998
Q gi|254780442|r 251 ALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 251 ~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+.-|.-+++......|.+.|+||.+
T Consensus 277 smGKTalAlnia~n~A~~~g~~v~~ 301 (507)
T PRK05636 277 GVGKSTIALDFMRSASIKNNKASVI 301 (507)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 7866899999999999876993799
No 186
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=53.84 E-value=15 Score=16.32 Aligned_cols=53 Identities=21% Similarity=0.450 Sum_probs=34.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHH---HCCCCEE--EEECCCC-CHHHHHHHHHHHHHH
Q ss_conf 775269994187757999999999---7399789--9988888-989999999999999
Q gi|254780442|r 4 LRRIKIISTLGPSSFSEDVINRLH---EEGTDVF--RINMSHT-SHDKMCELIKKIRAV 56 (480)
Q Consensus 4 mrktKIi~TlGPas~~~e~i~~l~---~aG~nv~--RiN~SHg-~~e~~~~~i~~ir~~ 56 (480)
|.+.||++|+-|.-.-...+-.++ ..|+|+. |+++-+. +.+...+.+..+|.+
T Consensus 1 ~~~~~~~~~i~p~~~~~~~~~~~~~~~~~gaDiVE~RvD~~~~~~~~~v~~~l~~lr~~ 59 (238)
T PRK13575 1 MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQWENVTVDQVAEMITKLKVM 59 (238)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 97403888628864377999999872447875899985401237989999999999985
No 187
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=53.60 E-value=15 Score=16.30 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=80.4
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCHHHH---HHHHHHCCCCCEEEEECCHHHHHH-HHHHCCCEE
Q ss_conf 3203878888789999999986104---786899970883799---999841888869999299899987-666539379
Q gi|254780442|r 346 LRRIEPNETGADVISSAARQIAETL---RLSAIFCYTASGATG---LRAARERPKLEIIALSPMIQTARR-LALVWGIHC 418 (480)
Q Consensus 346 ~~~~~~~~~~~~aIa~aav~lA~~l---~a~aIiv~T~sG~tA---~~iS~~RP~~pIiaiT~~~~t~r~-l~L~~GV~p 418 (480)
+....|..++.|.+|.+=+.-|++- +...-||=-.||+|- .+++.-|-..=|+.+=..-+..|| |--.||..=
T Consensus 29 lE~~NPs~SVKDRia~~MI~~AEk~G~lk~G~~IvEpTSGNTGIaLAmvAAArGYkliltMPetMS~ERr~lL~ayGAeL 108 (312)
T TIGR01139 29 LEFFNPSGSVKDRIALNMIEDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAEL 108 (312)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCEE
T ss_conf 60459898677788999999998658868888898237773269999999871894999867432689999998709658
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 993687999999999999999888
Q gi|254780442|r 419 VVTEDASDSDDMVNRACRIVVEQG 442 (480)
Q Consensus 419 ~~~~~~~~~~~~i~~a~~~l~~~g 442 (480)
++.|...-+.-.+++|.+++.+.+
T Consensus 109 vLTpg~~GMkGAI~KA~Ei~~~~P 132 (312)
T TIGR01139 109 VLTPGAEGMKGAIAKAEEIAESTP 132 (312)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 872812376667899999998687
No 188
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=53.49 E-value=12 Score=17.01 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 4034778999985199689981444
Q gi|254780442|r 290 TRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 290 TRaEv~Dvanav~dG~D~imLs~ET 314 (480)
-|-+..-|..|..+|+|||+++|-.
T Consensus 38 Grv~~~~il~A~~~GADGV~V~GC~ 62 (124)
T pfam02662 38 GRVNPSLILKALEKGADGVLVLGCH 62 (124)
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 8649999999998699979994788
No 189
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.56 E-value=16 Score=16.18 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCHH
Q ss_conf 10478689997088379999984188----886999929989
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPMIQ 405 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~~ 405 (480)
....++.+|+-|-+|.||--+|.-=| .++.+.+||--.
T Consensus 144 ~~~r~DGlIVSTPTGSTAYslSaGGPIv~P~~~~~~ltPIa~ 185 (265)
T PRK04885 144 ERFRGDGLCVSTPTGSTAYNKSLGGAVIHPSLEALQLTEIAS 185 (265)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 999567799966985167675269943179988199970477
No 190
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.49 E-value=12 Score=16.97 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=20.5
Q ss_pred CCEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCH
Q ss_conf 86899970883799999-----8418888699992998
Q gi|254780442|r 372 LSAIFCYTASGATGLRA-----ARERPKLEIIALSPMI 404 (480)
Q Consensus 372 a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~ 404 (480)
-+.+|++|.||+|...+ +|.+ .++|+++|.+.
T Consensus 73 ~Dv~I~iS~SGeT~e~~~~~~~aK~~-ga~ii~IT~~~ 109 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVAKKAKEI-GATVAAITTNP 109 (179)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 99999981999968999999999987-99299997989
No 191
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=52.34 E-value=16 Score=16.16 Aligned_cols=117 Identities=13% Similarity=0.256 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHH--C
Q ss_conf 55677899887348853250585577347999998620034335553278566311788875331247522220021--5
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVE--M 250 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e--~ 250 (480)
++..+-|+.|- +-|.+...||.+.++.+..-+. + -++ |++..-.- .-|.+|.+ .
T Consensus 137 ~~EVEmIr~A~---~~dl~T~~yvf~~e~a~~Ma~A-G-aDi-Iv~H~GlT------------------~gG~iG~~~a~ 192 (268)
T pfam09370 137 DLEVEMIRLAH---EKGLLTTPYVFNVEEARAMAEA-G-ADI-IVAHMGLT------------------TGGTIGADTAL 192 (268)
T ss_pred HHHHHHHHHHH---HCCCCCCCEECCHHHHHHHHHC-C-CCE-EEECCCCC------------------CCCCCCCCCCC
T ss_conf 99999999999---7798333132689999999974-9-989-99767767------------------77674677767
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 876736899999999851398399805767888828898403477899998519968998144435446589
Q gi|254780442|r 251 ALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVD 322 (480)
Q Consensus 251 ~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~ 322 (480)
.+|+-......|.+.|++.++-+|+-. ---|.-|-.++-.|.+- -++++|+ =|.+++=+.|+|
T Consensus 193 sl~~a~~~~~~i~~aa~~v~~diIvLc------hGGpI~~P~Da~~vl~~-t~~~~Gf--~GaSS~ERlPvE 255 (268)
T pfam09370 193 SLDDCVELINAIARAARSVNPDVIVLC------HGGPIATPEDAQYVLDR-TPGCHGF--YGASSMERLPTE 255 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEE------CCCCCCCHHHHHHHHHC-CCCCCEE--ECCCHHHHHHHH
T ss_conf 899999999999999998599869995------17888998999999973-9777667--633036664689
No 192
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=52.23 E-value=16 Score=16.15 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHHHHHHHCCCCEEEEE
Q ss_conf 7999999999739978999888889899999999-99999997499279999
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIK-KIRAVELRSRRPIGILI 68 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~-~ir~~~~~~~~~i~Il~ 68 (480)
...|..+.+.++|.+..-+-..-.+.+.-...++ .+++..+.+.+|+.+.+
T Consensus 13 ~~~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~ 64 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQL 64 (200)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999999998688736886488798246169999999999970799879984
No 193
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=51.90 E-value=16 Score=16.11 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 3117888753312475222200215876736899999999851398399805
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
++++.++++..|.+.++ |-|-.-+|.+.. .++++.|++.|++||+-|
T Consensus 117 l~~~~~~~~~~d~vvis-GSlP~g~~~~~y----~~li~~~~~~g~~vilD~ 163 (309)
T PRK13508 117 LHHFKQLLEKVEVVAIS-GSLPAGLPQDYY----AQLIELANNKGKKVVLDC 163 (309)
T ss_pred HHHHHHHHCCCCEEEEE-CCCCCCCCHHHH----HHHHHHHHHCCCEEEEEC
T ss_conf 99999870559999996-888999985999----999999985599899989
No 194
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=51.85 E-value=16 Score=16.10 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 398399805767888828898403477899998519-968998144435446589999999988
Q gi|254780442|r 269 LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE-ADAIMLSAETASGSYPVDAVRTMSLVA 331 (480)
Q Consensus 269 ~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG-~D~imLs~ETa~G~yP~~~v~~~~~i~ 331 (480)
..+|+|.= ||=..-.+|| |...++-+ ..---+..++|=|+++++-++.+-++.
T Consensus 196 ~~~Pli~~-----~MG~~G~~sR-----i~~~~~GS~~Tfa~~~~~sAPGQ~~v~~lr~il~~l 249 (253)
T PRK02412 196 ADQPIITM-----SMGKLGRISR-----LAGEVFGSAWTFGSLDQASAPGQISVNDLRTILEIL 249 (253)
T ss_pred CCCCEEEE-----ECCCCCHHHH-----HHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99988999-----6798648999-----989987997186127999989997799999999998
No 195
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=51.81 E-value=16 Score=16.10 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHH
Q ss_conf 77899887348853250585577347999998620034335553278566311788875331247522220021587673
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELI 255 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~v 255 (480)
...|...|+...+|.|.+||+..--+ .... --||. .+.++-- . -..
T Consensus 13 q~~L~~~C~~~~ydii~isFl~~f~~----------~~~p----------~~n~a---~~c~~~~---------~--~~C 58 (280)
T cd02877 13 EGSLREYCDTGNYDIVNISFLNVFGS----------GGTP----------GLNFA---GHCGGST---------Y--PNC 58 (280)
T ss_pred CCCHHHHHCCCCCCEEEEEEEEECCC----------CCCE----------EEECC---CCCCCCC---------C--CCH
T ss_conf 77388986899978899988711489----------9973----------03526---7888666---------7--870
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHC--C---------------CCEEEECCCCCCCC
Q ss_conf 689999999985139839980576788882889840347789999851--9---------------96899814443544
Q gi|254780442|r 256 PGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE--E---------------ADAIMLSAETASGS 318 (480)
Q Consensus 256 p~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~d--G---------------~D~imLs~ETa~G~ 318 (480)
|.+... |+.|...||.|+++--==. -..-.|+.++..++|+.+.+ | .||+=|-=|.-.+.
T Consensus 59 ~~i~~d-I~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~lw~~fg~g~~~~~~RPfG~avlDG~D~DiE~g~~~ 135 (280)
T cd02877 59 PQLGAD-IKHCQSKGKKVLLSIGGAG--GSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSPE 135 (280)
T ss_pred HHHHHH-HHHHHHCCCEEEEECCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEECCCCCCC
T ss_conf 568999-9999987998999736888--8615589899999999999973788766775777751330310111278840
Q ss_pred CHHHHHHHHHHH
Q ss_conf 658999999998
Q gi|254780442|r 319 YPVDAVRTMSLV 330 (480)
Q Consensus 319 yP~~~v~~~~~i 330 (480)
+=..-++.|+..
T Consensus 136 ~y~~l~~~Lr~l 147 (280)
T cd02877 136 NYDALAKRLRSL 147 (280)
T ss_pred CHHHHHHHHHHH
T ss_conf 399999999998
No 196
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=51.74 E-value=16 Score=16.09 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=14.0
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 433555327856631178887533
Q gi|254780442|r 213 KIGLMSKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 213 ~~~IiaKIE~~~al~nl~eI~~~s 236 (480)
++-|++ -|+.||+||-+++..|
T Consensus 406 ~~~i~~--kNq~GLKnLykLvS~s 427 (1264)
T TIGR01405 406 HIIILV--KNQAGLKNLYKLVSIS 427 (1264)
T ss_pred EEEEEE--ECCHHHHHHHHHHHHH
T ss_conf 157877--6303478899998799
No 197
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=51.70 E-value=16 Score=16.09 Aligned_cols=129 Identities=24% Similarity=0.282 Sum_probs=68.7
Q ss_pred HCCCEEEEEHHHHHHHHHCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCCCC-HHHHHHHHHHHHHHHHCCHH-HHHH-
Q ss_conf 13983998057678888288984034-77899998519968998144435446-58999999998876301012-4444-
Q gi|254780442|r 268 QLGKPVVIATQMLESMVTSPFPTRAE-VSDVATAVFEEADAIMLSAETASGSY-PVDAVRTMSLVASSAERDSS-WLEM- 343 (480)
Q Consensus 268 ~~~kpvivATq~leSM~~~p~PTRaE-v~Dvanav~dG~D~imLs~ETa~G~y-P~~~v~~~~~i~~~~E~~~~-~~~~- 343 (480)
..||-+=.-=++=-|=.-+|.|+-=- ++-|=.||..|||||=. ---+|.- --+.++-|.+|+..+|.|=- ..-.
T Consensus 66 ~~g~D~GlIvHLsAST~L~P~p~~K~~~~tVE~Ai~~GADAVS~--HvNvGs~~e~d~~~~lg~vA~~ad~~GvPlLAMm 143 (259)
T TIGR01949 66 EKGKDAGLIVHLSASTSLSPDPNDKRIVTTVEDAIRLGADAVSI--HVNVGSDTEADQIEDLGDVAEIADDWGVPLLAMM 143 (259)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHCCCCEEEE--EEECCCCCCHHHHHHHHHHHHHHHHCCCCHHECC
T ss_conf 66831699986045432588887875785148997328986799--8864898738999999899998865488420112
Q ss_pred HHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHH---HHHHHHHCCCCC-EEEEECC
Q ss_conf 443-20387888878999999998610478689997088379---999984188886-9999299
Q gi|254780442|r 344 RSL-RRIEPNETGADVISSAARQIAETLRLSAIFCYTASGAT---GLRAARERPKLE-IIALSPM 403 (480)
Q Consensus 344 ~~~-~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~t---A~~iS~~RP~~p-IiaiT~~ 403 (480)
+.. +..+. +-.++.+++|| .++.+|+|+ ||=-++||.+ ..-+..+ ..| |+|-=|.
T Consensus 144 YaRG~~i~~-e~d~~~v~HAa-Rlg~ElGAD-vvK~~Y~Gd~~SF~~VV~~c--~~PVvvAGG~k 203 (259)
T TIGR01949 144 YARGPRIDD-EVDPEVVAHAA-RLGEELGAD-VVKVPYTGDIDSFEEVVKAC--AVPVVVAGGPK 203 (259)
T ss_pred CCCCCCCCC-CCCHHHHHHHH-HHHHHHCCC-EEEECCCCCHHHHHHHHCCC--CCCEEEECCCC
T ss_conf 788688766-44767888887-653534577-66514317746799996217--87778737779
No 198
>KOG1816 consensus
Probab=51.43 E-value=16 Score=16.06 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=45.1
Q ss_pred CCCEEEEEECCCCCEEECCCCEEEEECCCC----CCCCCCCCCCCCCCHHHCCCCCEEEEECC--CEEECCCCCCCCEEE
Q ss_conf 898678865489818965899999953245----56444221266442221133652674068--422102344541124
Q gi|254780442|r 71 QGPKFRVGKFANSKVDLTEGQIFTLDNKDS----LGSSDRVMLPHPEIFASIKIGDRLLIDDG--RVKLCVQEKGIGFIK 144 (480)
Q Consensus 71 ~GpkiR~g~~~~~~i~l~~G~~v~l~~~~~----~~~~~~i~i~y~~l~~~ik~Gd~I~idDG--~i~l~V~~~~~~~i~ 144 (480)
+|+.+|+.. +.|-+|.-++|-.... +.+.+.|.=|--.-+.-+..||.|.+..+ ...|+|.+..+....
T Consensus 100 ~gdlv~i~~-----v~lpkgtyvKLqP~s~dFLDItNpKAvLE~~LRn~acLT~gDvi~i~Yn~k~y~i~V~e~kPa~aV 174 (308)
T KOG1816 100 EGDLVRIRS-----VTLPKGTYVKLQPHSVDFLDITNPKAVLENALRNYACLTTGDVILINYNEKTYELKVVETKPANAV 174 (308)
T ss_pred CCCEEEEEE-----EECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEEEECCCCEE
T ss_conf 777689998-----502554155304688781136873899999876511121388899830876899999972478566
Q ss_pred EEECCCCEE
Q ss_conf 551388087
Q gi|254780442|r 145 CKVIAGISI 153 (480)
Q Consensus 145 c~V~~gG~l 153 (480)
|.+.....+
T Consensus 175 sIiEtD~~V 183 (308)
T KOG1816 175 SIIETDLNV 183 (308)
T ss_pred EEEECCEEE
T ss_conf 899701111
No 199
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=51.33 E-value=13 Score=16.89 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=22.5
Q ss_pred CEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCHH
Q ss_conf 6899970883799999-----84188886999929989
Q gi|254780442|r 373 SAIFCYTASGATGLRA-----ARERPKLEIIALSPMIQ 405 (480)
Q Consensus 373 ~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~~ 405 (480)
+.+|.+|+||+|...+ +|-+ .++++++|.++.
T Consensus 49 ~lvi~iS~SG~T~e~i~a~~~ak~~-g~~tiaiT~~~~ 85 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEK-GATVIGLTDDED 85 (120)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf 6999983798978999999999986-995999989898
No 200
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=50.59 E-value=17 Score=15.97 Aligned_cols=89 Identities=12% Similarity=0.272 Sum_probs=46.2
Q ss_pred HHHHHCCCCCEECCCCCCCC--------H-HHHHHHHHHHCCCCE-EEEEECCHH-HHHHHHHHHHHHHE--EEEECCCC
Q ss_conf 98873488532505855773--------4-799999862003433-555327856-63117888753312--47522220
Q gi|254780442|r 180 HAALQTCEVDWVALSFIQSA--------D-DLLEIRKIISQNKIG-LMSKIEKPR-AIEYASEIIQLSDA--VMVARGDL 246 (480)
Q Consensus 180 ~~a~~~~~vD~ialSfVr~~--------~-di~~~r~~l~~~~~~-IiaKIE~~~-al~nl~eI~~~sDg--imiaRGDL 246 (480)
++.+++.+.|+|++.+..+. + -.+.+|+.+..-+.. ||.=-.+++ --+=|+...++++| .++.--.+
T Consensus 82 Kk~v~~~gaD~I~l~l~s~dP~~~d~s~~e~a~~vk~V~~av~vPLIi~G~~n~ekD~evl~~~ae~~~g~~~Ll~~a~~ 161 (322)
T PRK04452 82 KKCVEKYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKAAEAAEGERCLLGSAEL 161 (322)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECHH
T ss_conf 99998718878999941588776768999999999999975699989976788543899999999974786717724324
Q ss_pred CHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf 02158767368999999998513983998057
Q gi|254780442|r 247 GVEMALELIPGIQKKLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 247 g~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq 278 (480)
. . -|.|-..|-.+|.||+.-+.
T Consensus 162 ~------n----yk~i~~aAl~y~h~V~a~sp 183 (322)
T PRK04452 162 D------N----YKKIAAAALAYGHAVIAWSP 183 (322)
T ss_pred H------H----HHHHHHHHHHCCCCEEEECC
T ss_conf 4------0----99999999973992899777
No 201
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=50.36 E-value=17 Score=15.94 Aligned_cols=240 Identities=19% Similarity=0.247 Sum_probs=124.2
Q ss_pred HCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHH
Q ss_conf 34885325058557734799999862003433555327--8566311788875331247522220021587673689999
Q gi|254780442|r 184 QTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIE--KPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKK 261 (480)
Q Consensus 184 ~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE--~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ 261 (480)
.+.++|.|=++ |.+.++.+.++++....+++++|-|- -+.|++ .+-...|.+-|--|.+|- -+++ +.
T Consensus 41 ~~aGceiVRva-vp~~~~a~al~~I~~~~~iPlVADIHF~~~lAl~---a~~~g~~kiRINPGNig~---~~~~----~~ 109 (345)
T pfam04551 41 EEAGCDIVRVA-VPDMEAAEALKEIKKQSPIPLVADIHFDYRLALE---AIEAGVDKIRINPGNIGR---REKV----KE 109 (345)
T ss_pred HHCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHH---HHHHHHCCCCCCCCCCCC---HHHH----HH
T ss_conf 98599989988-7999999849999985899714004248999999---998622015679977486---7878----99
Q ss_pred HHHHHHHCCCEEEEEH-------HHHHHHHHCCCCCHHHH----HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999851398399805-------76788882889840347----789999851996899814443544658999999998
Q gi|254780442|r 262 LIRIARQLGKPVVIAT-------QMLESMVTSPFPTRAEV----SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLV 330 (480)
Q Consensus 262 ii~~~~~~~kpvivAT-------q~leSM~~~p~PTRaEv----~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i 330 (480)
++..|+++++|+=+-. ++|+-.- .|.|. |=+ ..+.-+-..|.+-+.+|--.+. |..+++.-+.+
T Consensus 110 vv~~ak~~~~pIRIGvN~GSL~~~~l~ky~-~~~~~-amveSAl~~~~~~e~~~f~~iviS~KsS~---v~~~i~ayr~l 184 (345)
T pfam04551 110 VVEAAKERGIPIRIGVNSGSLEKRILEKYG-GPTPE-AMVESALEHVRILEELGFDDIVISLKASD---VLVMIEAYRLL 184 (345)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHCC-CCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCC---HHHHHHHHHHH
T ss_conf 999999839978983267776889998708-98789-99999999999998789986899997186---88999999999
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHH
Q ss_conf 87630101244444432038788--8878999999998610478689997088379999984188886999929989998
Q gi|254780442|r 331 ASSAERDSSWLEMRSLRRIEPNE--TGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTAR 408 (480)
Q Consensus 331 ~~~~E~~~~~~~~~~~~~~~~~~--~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r 408 (480)
++..+ |.-.-...+..... .+.++++.+. -|++-++-..=|.+|..---=-.+ -...++
T Consensus 185 a~~~d----yPLHLGvTEAG~~~~G~IKSs~gig~-LL~~GIGDTIRVSLt~dP~~EV~v--------------~~~IL~ 245 (345)
T pfam04551 185 AEKTD----YPLHLGVTEAGTGEDGTIKSAIGIGA-LLAEGIGDTIRVSLTEDPVEEVKV--------------AFEILQ 245 (345)
T ss_pred HHHCC----CCCEECCCCCCCCCCCEEHHHHHHHH-HHHCCCCCEEEEECCCCCHHHHHH--------------HHHHHH
T ss_conf 97579----88344774777998811558988999-997188653999678995478999--------------999999
Q ss_pred HHHHH-CCCEEEEECCCC----CHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 76665-393799936879----9999999999999988887788779998522278888
Q gi|254780442|r 409 RLALV-WGIHCVVTEDAS----DSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462 (480)
Q Consensus 409 ~l~L~-~GV~p~~~~~~~----~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G 462 (480)
.|.|- +|+.-+-+|... |..++.+...+.+. .++.+ .-|-+-|-..+.+|
T Consensus 246 sl~lR~~g~~iISCPtCGR~~~dl~~~a~~ve~~l~---~~~~~-l~vAVMGCvVNGPG 300 (345)
T pfam04551 246 SLGLRKRGVEIISCPTCGRTLFDLIKVAKEVEERLS---HLKKP-LKVAVMGCVVNGPG 300 (345)
T ss_pred HCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH---CCCCC-CEEEEECEEECCCC
T ss_conf 728775786487588746611559999999999973---79989-88999780431876
No 202
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=50.29 E-value=17 Score=15.94 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=100.5
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC--CCE-EECC--C--C
Q ss_conf 9999999997399789998888898999999999999999749927999987898678865489--818-9658--9--9
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN--SKV-DLTE--G--Q 91 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~--~~i-~l~~--G--~ 91 (480)
-.+.|..-.+.|--|.-+|+. +.|..+..+ +++++.+.|+ |+.=.+|.--..+.+.. ..+ .+.+ + -
T Consensus 6 ~k~ll~~A~~~~yAV~AfNv~--n~e~~~Avi----~AAee~~sPv-Ilq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~V 78 (285)
T PRK07709 6 MKEMLNKALEGKYAVGQFNMN--NLEWTQAIL----AAAEEEKSPV-ILGVSEGAARHMTGFKTVVAMVKALIEEMNITV 78 (285)
T ss_pred HHHHHHHHHHCCEEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999889079997889--999999999----9999978899-999374588765677899999999999838999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCC
Q ss_conf 999953245564442212664422211336-5267406842210--------234-454112455138808711456446
Q gi|254780442|r 92 IFTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 92 ~v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
-|.+..|... ++..+.+.+..| +.|.+|-....|+ |.+ .+...+..+.+-|..=+..-++.-
T Consensus 79 PV~lHLDH~~--------~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~ 150 (285)
T PRK07709 79 PVAIHLDHGS--------SFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIA 150 (285)
T ss_pred CEEEECCCCC--------CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 8898899999--------99999999972997798529989999999999999999987498399972323675677677
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE
Q ss_conf 78544555676556778998873488532505855773479999986200343355532785663117888753312475
Q gi|254780442|r 162 PDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMV 241 (480)
Q Consensus 162 p~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimi 241 (480)
.+. .+|+- .+..+|. ++-++|++|.||=...-.- |=+-..-++-|++|-+..+-=+|
T Consensus 151 ~~~-----~~T~p-e~a~~Fv-~~TgvD~LAvaiGn~HG~y----------------k~~p~l~~~~l~~i~~~~~vPLV 207 (285)
T PRK07709 151 EGV-----IYADP-AECKHLV-EATGIDCLAPALGSVHGPY----------------KGEPNLGFAEMEQVRDFTGVPLV 207 (285)
T ss_pred CCC-----CCCCH-HHHHHHH-HHHCCCEEEHHHCCCCCCC----------------CCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 555-----15799-9999999-7318788842205555776----------------89887669999999840599879
Q ss_pred ECCCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 22220021587673689999999985139-839980576788882
Q gi|254780442|r 242 ARGDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 242 aRGDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~~ 285 (480)
=-|-=| +|.|+ |++|.+.| ..+=+.|.+...+..
T Consensus 208 LHGgSG--~~~e~--------i~~ai~~Gv~KiNi~T~l~~a~~~ 242 (285)
T PRK07709 208 LHGGTG--IPTAD--------IEKAISLGTSKINVNTENQIEFTK 242 (285)
T ss_pred EECCCC--CCHHH--------HHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 649999--99999--------999998598599988288999999
No 203
>KOG2683 consensus
Probab=50.15 E-value=17 Score=15.92 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=45.0
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHH
Q ss_conf 33555327856631178887533124752222002158767368999999998513983998057678888288984034
Q gi|254780442|r 214 IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAE 293 (480)
Q Consensus 214 ~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaE 293 (480)
+-.+--=-+++-++-.-+-++++||+++----|-+--+ =++|..+++.+||+.+ -|--||||.
T Consensus 225 V~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg--------~r~i~~a~~~k~pi~I---------vNIGpTRaD 287 (305)
T KOG2683 225 VTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSG--------FRFIRHAHEKKKPIAI---------VNIGPTRAD 287 (305)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHH--------HHHHHHHHHHCCCEEE---------EECCCCCHH
T ss_conf 68855879848889999988536846993315777778--------8999988861696799---------953786311
No 204
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.01 E-value=17 Score=15.91 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=46.1
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHC----CCCCEEEEECC---HHHHHHHHHHCCCEEEEECCCCCHHHHHHH---H--
Q ss_conf 61047868999708837999998418----88869999299---899987666539379993687999999999---9--
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARER----PKLEIIALSPM---IQTARRLALVWGIHCVVTEDASDSDDMVNR---A-- 434 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~~---~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~---a-- 434 (480)
..+..++.+|+-|-+|.||--+|.-= |.++.+.+||- .-+.| |+..+.....+-.+.. .
T Consensus 170 ~~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~i~itPI~PHsL~~R---------PlVl~~~~~I~i~~~~~~~~~~ 240 (296)
T PRK01231 170 VYSQKSDGLIVATPTGSTAYALSAGGPIMHPKLDAIVLVPMYPHTLSSR---------PIVVDGNSEIKIVISEDNRIYP 240 (296)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC---------CEEECCCCEEEEEECCCCCCCE
T ss_conf 9999747599967874567564169954079987499943687646799---------8898999879999877888746
Q ss_pred --HHHHHHCCCCCCCCEEEEEE
Q ss_conf --99999888877887799985
Q gi|254780442|r 435 --CRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 435 --~~~l~~~g~i~~GD~VVvv~ 454 (480)
.--.+..-.+++||.|.+..
T Consensus 241 ~v~~DGq~~~~l~~gd~I~I~~ 262 (296)
T PRK01231 241 QVSCDGQNHVTCAPGDTITIRK 262 (296)
T ss_pred EEEECCCCCEECCCCCEEEEEE
T ss_conf 9998798415719999999998
No 205
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=49.90 E-value=17 Score=15.89 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=75.3
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH--HHEEEEECCCCCHHCC
Q ss_conf 77899887348853250585577347999998620034--3355532785663117888753--3124752222002158
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNK--IGLMSKIEKPRAIEYASEIIQL--SDAVMVARGDLGVEMA 251 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~--~~IiaKIE~~~al~nl~eI~~~--sDgimiaRGDLg~e~~ 251 (480)
...|.-.++ .++|+|.+ ++.+..+...+-+.+++.+ +++.-.-.| .++.++..++. .|.|++ ++++-+
T Consensus 76 ~~~i~~~~~-~gad~I~~-H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T--~i~~l~~~l~~~~iD~VLl----MsV~PG 147 (224)
T PTZ00170 76 ERWVDSFAK-AGASQFTF-HIEATEDPKAVARKIRAAGMQVGVALKPKT--PAEELFPLIDAGLVDMVLV----MTVEPG 147 (224)
T ss_pred HHHHHHHHH-CCCCEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHCCCCEEEE----EEECCC
T ss_conf 887999986-28967998-500133999999999971476455607999--8799999971144578999----855699
Q ss_pred H---HHHHHHHHHHHHHHHHCC--CEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 7---673689999999985139--83998057678888288984034778999985199689981444354465899999
Q gi|254780442|r 252 L---ELIPGIQKKLIRIARQLG--KPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRT 326 (480)
Q Consensus 252 ~---e~vp~~Qk~ii~~~~~~~--kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~ 326 (480)
+ ..+|..-++|-+ .++.. ..+-|-.-+=. .-+...+.-|+|.+....=--....|.++++.
T Consensus 148 f~GQ~Fi~~~l~KI~~-lr~~~~~~~I~VDGGIn~-------------~ti~~l~~aGad~~V~GSaiF~~~d~~~~i~~ 213 (224)
T PTZ00170 148 FGGQSFMHDMMPKVRQ-LRQRYPHLNIQVDGGINP-------------DTIDLAAEAGANVIVAGTSIFKANDRKESIET 213 (224)
T ss_pred CCCCCCCHHHHHHHHH-HHHCCCCCEEEEECCCCH-------------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 8762145889999999-985489975999589998-------------99999998699999978588679999999999
Q ss_pred HHHHHHHH
Q ss_conf 99988763
Q gi|254780442|r 327 MSLVASSA 334 (480)
Q Consensus 327 ~~~i~~~~ 334 (480)
|++.+++.
T Consensus 214 lr~~i~~~ 221 (224)
T PTZ00170 214 LRRSVQKH 221 (224)
T ss_pred HHHHHHHH
T ss_conf 99999976
No 206
>pfam00455 DeoR Bacterial regulatory proteins, deoR family.
Probab=49.81 E-value=17 Score=15.88 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHCCCEEEEE
Q ss_conf 89999999986104786899970883799999841888-869999299899987666539379993
Q gi|254780442|r 357 DVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK-LEIIALSPMIQTARRLALVWGIHCVVT 421 (480)
Q Consensus 357 ~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~-~pIiaiT~~~~t~r~l~L~~GV~p~~~ 421 (480)
..||..|..+=.+ . =.+|=.+|.|...++++=|. .++-.+|++..++..|.-..++.-++.
T Consensus 5 ~~Ia~~Aa~~I~~---g-~~Ifld~GTT~~~la~~L~~~~~ltVvTnsl~ia~~L~~~~~~~v~ll 66 (157)
T pfam00455 5 RRIAKKAASLIED---G-DTIFLDAGTTVEELARALLGHINLTVITNSLPIANALSEKEHFRLILI 66 (157)
T ss_pred HHHHHHHHHHCCC---C-CEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEE
T ss_conf 9999999986899---9-999990968999999998538987999898999999985899679986
No 207
>PRK13936 phosphoheptose isomerase; Provisional
Probab=49.59 E-value=17 Score=15.86 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHCC-CCCEEEEECCCHHHH--HH--------HHHHCCCCCEEEEECCHHH--------------HHH
Q ss_conf 8789999999986104-786899970883799--99--------9841888869999299899--------------987
Q gi|254780442|r 355 GADVISSAARQIAETL-RLSAIFCYTASGATG--LR--------AARERPKLEIIALSPMIQT--------------ARR 409 (480)
Q Consensus 355 ~~~aIa~aav~lA~~l-~a~aIiv~T~sG~tA--~~--------iS~~RP~~pIiaiT~~~~t--------------~r~ 409 (480)
.++.|..++-.++..+ +-..|+++-.-|..+ .. ..+.||..|.++++.+..+ +||
T Consensus 25 ~~~~i~~aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~g~~~vf~rQ 104 (197)
T PRK13936 25 LAPPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDYSYNEVFSKQ 104 (197)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHH
T ss_conf 09999999999999998799899996878999999999998665412788875576436740110102787899999999
Q ss_pred HHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 66653--937999368799999999999999988887788779998522
Q gi|254780442|r 410 LALVW--GIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGL 456 (480)
Q Consensus 410 l~L~~--GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~ 456 (480)
+.-+- |=.-+..-. ......+-.|+++++++|. .+|...|.
T Consensus 105 l~a~~~~gDili~iS~-SGnS~Nii~A~~~A~~~g~-----~~i~ltG~ 147 (197)
T PRK13936 105 VRALGQPGDVLLAIST-SGNSANVIQAIQAAHEREM-----HVVALTGR 147 (197)
T ss_pred HHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHHHCCC-----EEEEEECC
T ss_conf 9983899998999969-9999899999999998599-----59999816
No 208
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.28 E-value=18 Score=15.83 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.5
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEEC
Q ss_conf 10478689997088379999984188----886999929
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARERP----KLEIIALSP 402 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~ 402 (480)
.+..++.+|+-|-+|.||--+|.--| ..+.+.+||
T Consensus 170 ~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~~~ltP 208 (290)
T PRK01911 170 TSYWADGLIIATPTGSTAYSLSCGGPIIVPHSNNFVITP 208 (290)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEE
T ss_conf 999536799967885578686469955569876089975
No 209
>PRK04759 consensus
Probab=49.21 E-value=18 Score=15.82 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=45.1
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHH----CCCCCEEEEEC---CHHHHHHHHHHCCCEEEEECCCCCHHH--------HHH
Q ss_conf 104786899970883799999841----88886999929---989998766653937999368799999--------999
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSP---MIQTARRLALVWGIHCVVTEDASDSDD--------MVN 432 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~----RP~~pIiaiT~---~~~t~r~l~L~~GV~p~~~~~~~~~~~--------~i~ 432 (480)
....++.+|+-|-+|.||--+|.= .|.++.+.+|| +.-+.| |+..+.....+- ...
T Consensus 173 ~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~PHsLs~R---------PlVl~~~~~i~i~v~~~~~~~~~ 243 (294)
T PRK04759 173 FSQRSDGLIVSTPTGSTAYSLSGGGPILSPSLNAISLVPMFPHTLSSR---------PLVVDGNRRIKLLVSPENRGTQE 243 (294)
T ss_pred EEECCCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCC---------CEEECCCCEEEEEECCCCCCCEE
T ss_conf 860488799957863778875369977579987399986687656799---------88979998599998458888579
Q ss_pred HHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 9999999888877887799985
Q gi|254780442|r 433 RACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 433 ~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
..++ .+..-.+++||.|.+..
T Consensus 244 l~~D-G~~~~~l~~gd~I~I~~ 264 (294)
T PRK04759 244 VSCD-GQVSLPVSPGDEIHIYQ 264 (294)
T ss_pred EEEC-CCCCEECCCCCEEEEEE
T ss_conf 9999-99755539999999998
No 210
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=49.07 E-value=14 Score=16.53 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCH-HHHHHHH
Q ss_conf 04786899970883799999-----8418888699992998-9998766
Q gi|254780442|r 369 TLRLSAIFCYTASGATGLRA-----ARERPKLEIIALSPMI-QTARRLA 411 (480)
Q Consensus 369 ~l~a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~-~t~r~l~ 411 (480)
--+-+.+|++|.||+|...+ +| +..+|++++|.+. ....+++
T Consensus 45 i~~~Dv~i~iS~SG~T~e~~~~~~~ak-~~g~~vI~iT~~~~S~La~~a 92 (128)
T cd05014 45 VTPGDVVIAISNSGETDELLNLLPHLK-RRGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHC
T ss_conf 789999999979999867999999998-637858999879999679968
No 211
>pfam05991 DUF901 Protein of unknown function (DUF901). This family consists of several hypothetical bacterial proteins as well as some uncharacterized sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=48.97 E-value=18 Score=15.79 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=36.1
Q ss_pred CEEEEECCCHHHH-----HHHHHHCCC-CCEEEEECCHHHHHHHHHHCCCEEEEECCC
Q ss_conf 6899970883799-----999841888-869999299899987666539379993687
Q gi|254780442|r 373 SAIFCYTASGATG-----LRAARERPK-LEIIALSPMIQTARRLALVWGIHCVVTEDA 424 (480)
Q Consensus 373 ~aIiv~T~sG~tA-----~~iS~~RP~-~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~ 424 (480)
..-|+||.+|.|| +++..++.+ ..|+++|.+. ..++.-+-+|...+-...+
T Consensus 67 ~i~vvfT~~~etAD~~IEr~v~~~~~~~~~v~VvTSD~-~~q~~v~g~GA~~isa~el 123 (166)
T pfam05991 67 GIEVVFTKEGETADSYIEKLVAELNRRKKQVTVVTSDR-AEQWTIFGRGALRISSREL 123 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHCCCCEEECHHHH
T ss_conf 88999888999878999999999616884499992888-9998951089659869999
No 212
>PRK05595 replicative DNA helicase; Provisional
Probab=48.96 E-value=18 Score=15.79 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8566311788875331247522220---02158767368999999998513983998
Q gi|254780442|r 222 KPRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 222 ~~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
-+-|+..||++.. | +.+||| |.--+.-|.-+.....-..|.+.|+||..
T Consensus 184 i~TGf~~LD~~t~---G--l~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~ 235 (444)
T PRK05595 184 VASGFRELDAKTS---G--FQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVI 235 (444)
T ss_pred CCCCHHHHHHHHC---C--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6588476998745---9--98577799985798980799999999999866993799
No 213
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=48.83 E-value=15 Score=16.29 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCHH
Q ss_conf 86899970883799999-----84188886999929989
Q gi|254780442|r 372 LSAIFCYTASGATGLRA-----ARERPKLEIIALSPMIQ 405 (480)
Q Consensus 372 a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~~ 405 (480)
-+.+|++|.||+|...+ +|.+ .++|+++|.+..
T Consensus 76 ~Dv~I~iS~SG~T~~~~~~~~~aK~~-ga~iI~IT~~~~ 113 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEKAKKA-GAKVVLITSNPD 113 (179)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf 99999981999956899999999987-991999979899
No 214
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.80 E-value=18 Score=15.78 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 31178887533124752222002158767368999999998513983998057678888288984034778999985199
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEA 305 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~ 305 (480)
..++++++..+|-++ |.+ .|..-...+..|.+.++|+++.|-=+.. ....++...+ ..
T Consensus 60 ~~~l~~~~~~~DVvI----DFS-------~p~~~~~~~~~~~~~~~~~ViGTTG~~~------~~~~~i~~~s----~~- 117 (265)
T PRK00048 60 TDDLEAVLDDFDVLI----DFT-------TPEATLENLEFALEHGKPLVIGTTGFTE------EQLAALREAA----KK- 117 (265)
T ss_pred CCCHHHHHCCCCEEE----ECC-------CHHHHHHHHHHHHHCCCCEEEEECCCCH------HHHHHHHHHC----CC-
T ss_conf 178988605599899----899-------8899999999999749977996089998------9999999746----58-
Q ss_pred CEEEECCCCCCCCC
Q ss_conf 68998144435446
Q gi|254780442|r 306 DAIMLSAETASGSY 319 (480)
Q Consensus 306 D~imLs~ETa~G~y 319 (480)
-+++.|.-.++|-.
T Consensus 118 ipil~apNfSlGvn 131 (265)
T PRK00048 118 IPVVIAPNFSVGVN 131 (265)
T ss_pred CCEEEECCHHHHHH
T ss_conf 87899785589999
No 215
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=48.80 E-value=18 Score=15.77 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECC-------CCEEECCCCCCC
Q ss_conf 22126644222113365267406842210234454112455138-------808711456446
Q gi|254780442|r 106 RVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIA-------GISIADRKGISF 161 (480)
Q Consensus 106 ~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~-------gG~l~s~Kgvni 161 (480)
.+.+..+.++++++.||.|.+| =+.|.|++.+++.+..-+.. =|.++.+..||+
T Consensus 23 ~l~I~~~~~~~~~~iG~SIavn--GvCLTV~~~~~~~~~fdv~~ETl~~T~l~~l~~G~~VNL 83 (198)
T PRK09289 23 RLTIEAPKLLSDLKLGDSIAVN--GVCLTVTEIDGDGFTVDVSPETLRRTNLGDLKVGDRVNL 83 (198)
T ss_pred EEEEECCCCCCCCCCCCEEEEC--CEEEEEEECCCCEEEEEEEHHHHHHCCCCCCCCCCEEEE
T ss_conf 9999808643567678879988--899888986898899998978833313777777966710
No 216
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.52 E-value=18 Score=15.75 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHH--H---HHHHHHCCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 876736899999999851398399805767888828898403477--8---99998519968998144435446589999
Q gi|254780442|r 251 ALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS--D---VATAVFEEADAIMLSAETASGSYPVDAVR 325 (480)
Q Consensus 251 ~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~--D---vanav~dG~D~imLs~ETa~G~yP~~~v~ 325 (480)
.+.|+|. -+|.-.--.||-|-+ --|+-||..+..|.---.- | |-=++|+|.--++ |-+--.|.+++.
T Consensus 1006 DLaKMPH---LLIAGtTGSGKSV~i-NsmI~SlLyk~~PdevrlImIDPKmvELs~Y~gIPHLL----~PVVTDpkkA~~ 1077 (1355)
T PRK10263 1006 DLAKMPH---LLVAGTTGSGKSVGV-NAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLL----TEVVTDMKDAAN 1077 (1355)
T ss_pred EHHHCCC---EEEECCCCCCCHHHH-HHHHHHHHHCCCHHHEEEEEECCCEEECCCCCCCCCCC----CCCCCCHHHHHH
T ss_conf 7421971---134046788830439-99999998438887947998668745314679997357----767378799999
Q ss_pred HHHHHHHHHHCCHHH
Q ss_conf 999988763010124
Q gi|254780442|r 326 TMSLVASSAERDSSW 340 (480)
Q Consensus 326 ~~~~i~~~~E~~~~~ 340 (480)
.|+-.+.++|+.+..
T Consensus 1078 AL~W~V~EMErRY~l 1092 (1355)
T PRK10263 1078 ALRWCVNEMERRYKL 1092 (1355)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 217
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.40 E-value=18 Score=15.73 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=29.7
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHH----CCCCCEEEEECC
Q ss_conf 6104786899970883799999841----888869999299
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSPM 403 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~----RP~~pIiaiT~~ 403 (480)
..+..++.+|+-|-+|.||--+|.= .|..+.+.+||-
T Consensus 174 v~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~i~ltPI 214 (304)
T PRK02645 174 VDQYKGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPI 214 (304)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEEC
T ss_conf 78984277999568754560231699544688762799766
No 218
>pfam04009 DUF356 Protein of unknown function (DUF356). Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=48.33 E-value=18 Score=15.72 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred HCCCCCEEEEE-CCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 10478689997-088379999984188886999929989998766653937999
Q gi|254780442|r 368 ETLRLSAIFCY-TASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV 420 (480)
Q Consensus 368 ~~l~a~aIiv~-T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~ 420 (480)
...++.+++-. ...|.+..++.+..|.+-|+.+|+....++.|.=.||-.|.+
T Consensus 53 k~~k~a~lv~v~~~~~~aI~~lrkIHPPAHiiVis~~~~vy~~L~~~~~~~p~l 106 (107)
T pfam04009 53 KKCKAAALVEVEEDAGKAIDRLRKIHPPAHVIVISPRHDVYEELLRLFGKLPEL 106 (107)
T ss_pred CCCHHHEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 303014477754870669999860599934999689876899999985006224
No 219
>PTZ00178 60S ribosomal protein L22/L17e; Provisional
Probab=48.10 E-value=14 Score=16.61 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 435446589999999988763010124
Q gi|254780442|r 314 TASGSYPVDAVRTMSLVASSAERDSSW 340 (480)
Q Consensus 314 Ta~G~yP~~~v~~~~~i~~~~E~~~~~ 340 (480)
+..|+||+++.+++-++.+.+|++-.+
T Consensus 78 ~~~GRwP~Ksa~~iL~lLkna~aNAe~ 104 (177)
T PTZ00178 78 QTQGRWPEKSVVFVLSLLKNAEANAEV 104 (177)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 987768289999999999756740140
No 220
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=48.07 E-value=18 Score=15.70 Aligned_cols=53 Identities=30% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 398399805767888828898403477899998519-968998144435446589999999988
Q gi|254780442|r 269 LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE-ADAIMLSAETASGSYPVDAVRTMSLVA 331 (480)
Q Consensus 269 ~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG-~D~imLs~ETa~G~yP~~~v~~~~~i~ 331 (480)
++||+++- ||-..-.+|| |++.++-. ..--.+-..+|-|+.+++.++.+..+.
T Consensus 175 ~~~p~i~i-----~MG~~G~~SR-----v~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 175 AEKPVITI-----SMGKTGKISR-----VAGPVFGSPITYASLDKPSAPGQISVDELRKILTLL 228 (231)
T ss_pred CCCCEEEE-----ECCCCCCHHH-----HHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 69977999-----6687774134-----347563785167515788889987999999999985
No 221
>pfam02115 Rho_GDI RHO protein GDP dissociation inhibitor.
Probab=48.03 E-value=18 Score=15.80 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=11.3
Q ss_pred EEEECCCCEEEEEECCCCCEEECCCCEEEE
Q ss_conf 999878986788654898189658999999
Q gi|254780442|r 66 ILIDLQGPKFRVGKFANSKVDLTEGQIFTL 95 (480)
Q Consensus 66 Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l 95 (480)
|.+||+|+ ...+++.++.+++|..+++
T Consensus 86 i~ldL~~~---~~~lk~~~F~IKEG~~Y~i 112 (201)
T pfam02115 86 IELDLTGD---LKQLKSQLFVLKEGSEYRL 112 (201)
T ss_pred EEEECCCC---HHHHCCCCEEEECCCEEEE
T ss_conf 68738885---5775589589707967999
No 222
>PRK12857 putative aldolase; Reviewed
Probab=48.02 E-value=18 Score=15.69 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=104.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-CC--EEECC--CCEEE
Q ss_conf 999999997399789998888898999999999999999749927999987898678865489-81--89658--99999
Q gi|254780442|r 20 EDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN-SK--VDLTE--GQIFT 94 (480)
Q Consensus 20 ~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~-~~--i~l~~--G~~v~ 94 (480)
.+.|..-.+.|--|--+|.. +.|+.+..+ +++++.+.|+ |+.=.+| -++-..+.. .. ..+.+ .=-|.
T Consensus 7 k~lL~~A~~~~yAV~AfNv~--n~e~~~avi----~AAee~~sPv-Ilq~s~~-~~~~~g~~~~~~~~~~~a~~~~VpV~ 78 (284)
T PRK12857 7 AELLEKAEKGGYAVGAFNCN--NMEIVQAIV----AAAEAERSPV-IIQASQG-AIKYAGIEYISAMVRTAAEKASVPVA 78 (284)
T ss_pred HHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCCC-HHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999889179987889--899999999----9999978998-9991714-77657999999999999997699899
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCCC
Q ss_conf 953245564442212664422211336-5267406842210--------234-454112455138808711456446785
Q gi|254780442|r 95 LDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPDT 164 (480)
Q Consensus 95 l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~~ 164 (480)
+..|.. -++..+.+.++.| +.|.+|-..+.|+ |.+ .+...+..+.+-|..-+...++.....
T Consensus 79 lHLDH~--------~~~e~i~~ai~~Gf~SVM~DgS~l~~eeNi~~Tk~vv~~ah~~gv~VEaElG~igg~ed~~~~~~~ 150 (284)
T PRK12857 79 LHLDHG--------TDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDER 150 (284)
T ss_pred EECCCC--------CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 967988--------999999999980998799728989999999999999999987089158853013676777776630
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECC
Q ss_conf 44555676556778998873488532505855773479999986200343355532785663117888753312475222
Q gi|254780442|r 165 FLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARG 244 (480)
Q Consensus 165 ~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRG 244 (480)
-..+|+- .+..+|. +.-++|++|+|+=...-.- |=+-+.-++-|.+|-++.|-=+|=-|
T Consensus 151 ---~~~~T~p-eea~~Fv-~~TgvD~LAvaiGn~HG~y----------------k~~p~L~~~~L~~I~~~~~vPLVLHG 209 (284)
T PRK12857 151 ---EAFFTDP-EEARRFV-EETGVDALAIAIGTAHGPY----------------KGVPKLDFDRLAKIRELVNIPLVLHG 209 (284)
T ss_pred ---CCCCCCH-HHHHHHH-HHHCCCEEEHHHCCCCCCC----------------CCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf ---0025899-9999999-9879787701205666776----------------89885699999999861699989768
Q ss_pred CCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 20021587673689999999985139-839980576788882
Q gi|254780442|r 245 DLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 245 DLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~~ 285 (480)
-=| +|.|+ +++|...| ..+=+.|.+...+..
T Consensus 210 gSG--i~~e~--------i~~ai~~Gi~KiNi~T~l~~a~~~ 241 (284)
T PRK12857 210 SSG--VPDEA--------IRKAISLGVRKVNIDTNIREAFVA 241 (284)
T ss_pred CCC--CCHHH--------HHHHHHHCCEEEEECHHHHHHHHH
T ss_conf 999--99999--------999998097599748799999999
No 223
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.02 E-value=18 Score=15.69 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCEECCC-------------CC--CCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 6765567789988734885325058-------------55--77347999998620034335553278566311788875
Q gi|254780442|r 170 ALTQKDREDLHAALQTCEVDWVALS-------------FI--QSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQ 234 (480)
Q Consensus 170 ~ltekD~~di~~a~~~~~vD~ialS-------------fV--r~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~ 234 (480)
.+|..++..|.-++.+.+||+|=+. |. ...+.++.+++.+...+...+. ..++.+.+++-.
T Consensus 20 ~fs~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~----~pg~~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLL----LPGIGTVHDLKA 95 (333)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHH
T ss_conf 9899999999999997198989960688888874335788899499999999874248056996----478666999999
Q ss_pred HH----HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEE
Q ss_conf 33----124752222002158767368999999998513983998057678888288984034778999985-1996899
Q gi|254780442|r 235 LS----DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVF-EEADAIM 309 (480)
Q Consensus 235 ~s----DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~-dG~D~im 309 (480)
+. |.+-++. + ..+... -++.++.++++|..+..- -|+.+| -+--+..+.+.... .|+|+|.
T Consensus 96 a~~~gv~~vri~~-----~--~te~d~-~~~~i~~ak~~G~~v~~~-~~~s~~-----~~~e~l~~~a~~~~~~Gad~I~ 161 (333)
T TIGR03217 96 AYDAGARTVRVAT-----H--CTEADV-SEQHIGMARELGMDTVGF-LMMSHM-----TPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHCCCCEEEEEE-----C--CCHHHH-HHHHHHHHHHCCCEEEEE-EEECCC-----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9966999789863-----1--667888-999999999769809999-750568-----9999999999999856999999
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 814443544658999999998876
Q gi|254780442|r 310 LSAETASGSYPVDAVRTMSLVASS 333 (480)
Q Consensus 310 Ls~ETa~G~yP~~~v~~~~~i~~~ 333 (480)
|. .|+=.-.|.++-+....+-..
T Consensus 162 i~-DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 162 IV-DSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred EC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 75-964468999999999999986
No 224
>PRK07591 threonine synthase; Validated
Probab=47.60 E-value=19 Score=15.65 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=31.0
Q ss_pred CEEEEECCHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE-EE
Q ss_conf 6999929989998766653---9379993687999999999999999888877887799985-22
Q gi|254780442|r 396 EIIALSPMIQTARRLALVW---GIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISA-GL 456 (480)
Q Consensus 396 pIiaiT~~~~t~r~l~L~~---GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~-G~ 456 (480)
.++++|.++ +...+.+++ |++ ++. ....--.++..+.+.|.++++|.||++. |+
T Consensus 333 ~~v~VsD~E-i~~A~~~La~~eGi~---vEp---asA~alAgl~kl~e~G~i~~de~VV~~lTG~ 390 (422)
T PRK07591 333 AIEDVTDEE-IIEGIKLLARTEGIF---TET---AGGTTVAVLKKLVEAGKIDPDETTVVYITGN 390 (422)
T ss_pred EEEEECHHH-HHHHHHHHHHHCCEE---ECC---CHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 899988999-999999999738977---786---0899999999999769999999499990887
No 225
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=47.37 E-value=19 Score=15.62 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=73.9
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 78998873488532505855773479999986200-------------34335553278566311788875331247522
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ-------------NKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~-------------~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR 243 (480)
.+|-.|...++ =.|...-|-+.+++..+|+.+.+ .++.+=.-||.|.+.-..+.+.++.|-.=|.-
T Consensus 376 RAilRAS~~G~-l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGT 454 (574)
T COG1080 376 RAILRASAHGN-LRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGT 454 (574)
T ss_pred HHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEECC
T ss_conf 99998722598-67998464529999999999999999998607864366664689866179999999887578745653
Q ss_pred CCCC-----HHCCHHH-----------HHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 2200-----2158767-----------36899999999851398399805767
Q gi|254780442|r 244 GDLG-----VEMALEL-----------IPGIQKKLIRIARQLGKPVVIATQML 280 (480)
Q Consensus 244 GDLg-----~e~~~e~-----------vp~~Qk~ii~~~~~~~kpvivATq~l 280 (480)
.||- +.=..++ |-..-++.|+.+++.||||=+..+|=
T Consensus 455 NDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA 507 (574)
T COG1080 455 NDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA 507 (574)
T ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHC
T ss_conf 28989999983588565745379997999999999999997398466433011
No 226
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.22 E-value=19 Score=15.61 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 98999999999999999749927
Q gi|254780442|r 42 SHDKMCELIKKIRAVELRSRRPI 64 (480)
Q Consensus 42 ~~e~~~~~i~~ir~~~~~~~~~i 64 (480)
+.+...+.++-||.+--+.+.++
T Consensus 23 ~E~~i~e~~reir~ALLeADVnl 45 (451)
T COG0541 23 TEKDVKEALREIRRALLEADVNL 45 (451)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 79999999999999999644468
No 227
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=47.04 E-value=19 Score=15.59 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 999999999999999888877887799985222788886415999994
Q gi|254780442|r 425 SDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 425 ~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~V 472 (480)
+-....+-.+++.+.+.|.+++||.|++++ +| +|.|=..-+++-
T Consensus 282 N~~sasi~~~L~~~~~~g~l~~Gd~vll~~---~G-~G~s~~~~~~rw 325 (326)
T PRK12879 282 NTSAATIPLALCLALEQGKIKPGDTLLLYG---FG-AGLTWAALLVKW 325 (326)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEEE---EC-HHHHHEEEEEEE
T ss_conf 437778999999999739999969999999---91-673224899997
No 228
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=47.03 E-value=12 Score=17.04 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=37.2
Q ss_pred HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHH-CCCEEEEE----HH--HHH--HHHHCCCCCHHH
Q ss_conf 312475222200215876736899999999851-39839980----57--678--888288984034
Q gi|254780442|r 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQ-LGKPVVIA----TQ--MLE--SMVTSPFPTRAE 293 (480)
Q Consensus 236 sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~-~~kpvivA----Tq--~le--SM~~~p~PTRaE 293 (480)
.|.++|+||. =++|++-..-..++.++-. ...|||-| |- +.+ .=+.-|+||-|-
T Consensus 194 ~DvlIVaRGG----GSiEDLW~FNdE~vaRAi~~s~iPvISAVGHEtD~tL~DfVAD~RApTPTaAA 256 (440)
T COG1570 194 VDVLIVARGG----GSIEDLWAFNDEIVARAIAASRIPVISAVGHETDFTLADFVADLRAPTPTAAA 256 (440)
T ss_pred CCEEEEECCC----CHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCHHHH
T ss_conf 9889991686----34888861580999999980799858406667775287764313479966878
No 229
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=46.69 E-value=19 Score=15.55 Aligned_cols=203 Identities=19% Similarity=0.167 Sum_probs=102.5
Q ss_pred EEECCHHHHHHHHHHHHHHHEEEEECCCCC-HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHH
Q ss_conf 532785663117888753312475222200-2158767368999999998513983998057678888288984034778
Q gi|254780442|r 218 SKIEKPRAIEYASEIIQLSDAVMVARGDLG-VEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296 (480)
Q Consensus 218 aKIE~~~al~nl~eI~~~sDgimiaRGDLg-~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~D 296 (480)
++|.-..|++|+-.. ||. ...|+-.--.+=|..|+ .=.+.+-.+|+++.|-|.+ ..+|
T Consensus 93 c~~~~~LGi~~~~aF------------D~~AACaGF~Y~Ls~A~~~i~-SG~y~~vLvvGaeklSs~~--------D~~D 151 (329)
T TIGR00747 93 CMVQAYLGIKNIPAF------------DLSAACAGFIYGLSVAKQYIE-SGKYKTVLVVGAEKLSSTL--------DWTD 151 (329)
T ss_pred HHHHHHCCCCCCCCC------------CHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCCC--------CCCC
T ss_conf 999976186676322------------236567668999999999861-5770268899851105536--------7466
Q ss_pred HHHHHH--CCCCEEEECCCCC-----CCCCHHHHHHHHHHHHHHHHCCHH--HH-HHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999985--1996899814443-----544658999999998876301012--44-4444320387888878999999998
Q gi|254780442|r 297 VATAVF--EEADAIMLSAETA-----SGSYPVDAVRTMSLVASSAERDSS--WL-EMRSLRRIEPNETGADVISSAARQI 366 (480)
Q Consensus 297 vanav~--dG~D~imLs~ETa-----~G~yP~~~v~~~~~i~~~~E~~~~--~~-~~~~~~~~~~~~~~~~aIa~aav~l 366 (480)
=.|+|+ ||+-++.|..=.- +...-.-+=-...+..+....... +. ......+..-.+.+.+..=+|+.+|
T Consensus 152 R~TcvLFGDGAgA~v~g~s~~~~~~eI~~~~l~AdG~~~~~L~l~~~~~~~P~~~~~~~~~~~f~~M~G~evFk~Av~~m 231 (329)
T TIGR00747 152 RGTCVLFGDGAGAVVVGESEDDGGLEIISTNLGADGTQGELLYLPAGGRRCPFSKNTLQGSSPFITMEGNEVFKHAVRKM 231 (329)
T ss_pred CCCEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 87579960672268870457877630123465305644321320677766887777344666617873732588999999
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHH-------HHHHHHHHCC-CEEEEEC-CCCCHHHHHHHHHHH
Q ss_conf 610478689997088379999984188886999929989-------9987666539-3799936-879999999999999
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQ-------TARRLALVWG-IHCVVTE-DASDSDDMVNRACRI 437 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~-------t~r~l~L~~G-V~p~~~~-~~~~~~~~i~~a~~~ 437 (480)
..... ....-+.++| -.|=-|-||.- ++.+|.|--- |.-=+-+ .-+..-..+..|+..
T Consensus 232 ~~~~~------------~~l~~a~l~~-~DiD~lvPHQAN~RIi~a~ak~L~~~~~~Vv~Tv~khyGNTSAASiP~AL~E 298 (329)
T TIGR00747 232 LKVVE------------ETLEAAGLSK-EDIDWLVPHQANIRIIEALAKRLELKESKVVKTVHKHYGNTSAASIPIALDE 298 (329)
T ss_pred HHHHH------------HHHHHHCCCH-HHCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999------------9999718783-0461555541116899999997089803168632001346304346678999
Q ss_pred HHHCCCCCCCCEEEEEE
Q ss_conf 99888877887799985
Q gi|254780442|r 438 VVEQGFGKPGDRIIISA 454 (480)
Q Consensus 438 l~~~g~i~~GD~VVvv~ 454 (480)
+.+.|.+|+||.+++.+
T Consensus 299 ~~~~G~iK~Gd~~LL~A 315 (329)
T TIGR00747 299 LLETGRIKKGDLLLLVA 315 (329)
T ss_pred HHHCCCCCCCCEEEEEE
T ss_conf 87417777244888763
No 230
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=46.04 E-value=20 Score=15.48 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=61.4
Q ss_pred HHHHH-HHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEE---------EEECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 56778-998873488532505855773479999986200343355---------53278566311788875331247522
Q gi|254780442|r 174 KDRED-LHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLM---------SKIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 174 kD~~d-i~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~Ii---------aKIE~~~al~nl~eI~~~sDgimiaR 243 (480)
+|... +..+. +.+|..+...-+ +.++-..+.++.......|+ ++=.+...++.+++++...+.-.+|=
T Consensus 14 ~d~~~vl~~a~-~~gv~~ii~~~~-~~~~~~~~~~la~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~~~vaI 91 (255)
T pfam01026 14 GDRDEVIERAR-EAGVTAVVVVGT-DLKDFERALELARKYPGKVYAAVGVHPHEADEASEEVLEALEKLKLAEHPKVVAI 91 (255)
T ss_pred CCHHHHHHHHH-HCCCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 69999999999-879998999569-9999999999997687667899535810115168899999999974358987999
Q ss_pred CCCCHHCCH--HHHHHHHHH----HHHHHHHCCCEEEEEH
Q ss_conf 220021587--673689999----9999851398399805
Q gi|254780442|r 244 GDLGVEMAL--ELIPGIQKK----LIRIARQLGKPVVIAT 277 (480)
Q Consensus 244 GDLg~e~~~--e~vp~~Qk~----ii~~~~~~~kpvivAT 277 (480)
|..|.+... +.-...|+. .+..|.++++|+++=+
T Consensus 92 GEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~~~~lPvilH~ 131 (255)
T pfam01026 92 GEIGLDYYYVDESPKEAQEEVFRRQLELAKELDLPVVIHT 131 (255)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8013577657999899999999999999987089748984
No 231
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=45.90 E-value=20 Score=15.47 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=8.1
Q ss_pred CCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 88532505855773479999986
Q gi|254780442|r 186 CEVDWVALSFIQSADDLLEIRKI 208 (480)
Q Consensus 186 ~~vD~ialSfVr~~~di~~~r~~ 208 (480)
.++|-| -|++.--+..+|+.
T Consensus 14 ~gvDai---iv~D~g~~~~~~~~ 33 (232)
T pfam01136 14 IGVDAV---IVADPGVLRLARER 33 (232)
T ss_pred CCCCEE---EEECHHHHHHHHHH
T ss_conf 699999---98099999999986
No 232
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=45.79 E-value=20 Score=15.45 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHEEEEECC--CCC-----HH------CCHHHHHHHHHHHHHHHHHCCCEEEEE---HHHHH
Q ss_conf 63117888753312475222--200-----21------587673689999999985139839980---57678
Q gi|254780442|r 225 AIEYASEIIQLSDAVMVARG--DLG-----VE------MALELIPGIQKKLIRIARQLGKPVVIA---TQMLE 281 (480)
Q Consensus 225 al~nl~eI~~~sDgimiaRG--DLg-----~e------~~~e~vp~~Qk~ii~~~~~~~kpvivA---Tq~le 281 (480)
..++++++++..||+++.=| |+. -+ ..-..--.++..+++.|.+.++|+.=- -|+|.
T Consensus 48 ~~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~~~~~~~~Rd~~e~~l~~~a~~~~~PilGICrG~Qlln 120 (219)
T pfam07722 48 DPEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQLLN 120 (219)
T ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 9899999997679899859887678221467768667875788899999999999876998799765089999
No 233
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=45.56 E-value=20 Score=15.43 Aligned_cols=16 Identities=13% Similarity=0.136 Sum_probs=7.9
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999997399789998
Q gi|254780442|r 22 VINRLHEEGTDVFRIN 37 (480)
Q Consensus 22 ~i~~l~~aG~nv~RiN 37 (480)
.-..+..-|.++.=+-
T Consensus 56 VA~NLa~LGa~v~lvg 71 (473)
T PRK11316 56 VAMNIASLGAQARLVG 71 (473)
T ss_pred HHHHHHHCCCCEEEEE
T ss_conf 9999996699389999
No 234
>PRK06749 replicative DNA helicase; Provisional
Probab=45.39 E-value=20 Score=15.41 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH---HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE------EHHHHHHHH
Q ss_conf 566311788875---33124752222002158767368999999998513983998------057678888
Q gi|254780442|r 223 PRAIEYASEIIQ---LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI------ATQMLESMV 284 (480)
Q Consensus 223 ~~al~nl~eI~~---~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv------ATq~leSM~ 284 (480)
+-|+..||+++. ..|=|.| |.--+.-|--++..-....| +.|+||.+ +.|+..-|+
T Consensus 170 ~TGf~~LD~lt~Gl~~g~Livi-----aaRPsmGKTa~alnia~~~a-~~g~~v~~fSlEMs~~~l~~R~l 234 (428)
T PRK06749 170 ETGYTSLNKMTCGLQEGDFVVL-----GARPSMGKTAFALNVGLHAA-KSGAAVGLFSLEMSSKQLLKRMA 234 (428)
T ss_pred CCCHHHHHHHHCCCCCCCEEEE-----ECCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHH
T ss_conf 7783889875249998868999-----62798976899999999999-64992799837899999999999
No 235
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=45.26 E-value=20 Score=15.40 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=56.9
Q ss_pred EEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCC-CCCCCC-CCCCCCHHHCCCCCEEEEEC----CCEEECCCC
Q ss_conf 799998789867886548981896589999995324556-444221-26644222113365267406----842210234
Q gi|254780442|r 64 IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLG-SSDRVM-LPHPEIFASIKIGDRLLIDD----GRVKLCVQE 137 (480)
Q Consensus 64 i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~~~~~~-~~~~i~-i~y~~l~~~ik~Gd~I~idD----G~i~l~V~~ 137 (480)
.++++.-.||..++|++.. |+.+..+.-.+.. +..| +.+.+. .+|.+ +..+.+|++|+... ..+..+-.-
T Consensus 31 ~Gl~~ea~gp~~~vG~~c~--I~~~g~~~~~~~~-EVVGf~~~~v~LmPy~~-~~G~~~G~~V~~~~isae~~L~~~qlP 106 (455)
T TIGR01026 31 KGLLIEAVGPQASVGDLCL--IERKGSEGKEVVA-EVVGFNGEKVLLMPYEE-VEGVEPGSKVLAKNISAEEGLSIKQLP 106 (455)
T ss_pred EEEEEEEECCCCCCCCEEE--EEEECCCCCEEEE-EEEEEECCEEEECCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 5268985247766777789--9973789877999-98852067567523654-443353452332043300254557433
Q ss_pred CCCCEEEEEECCC-CEEECCCCC
Q ss_conf 4541124551388-087114564
Q gi|254780442|r 138 KGIGFIKCKVIAG-ISIADRKGI 159 (480)
Q Consensus 138 ~~~~~i~c~V~~g-G~l~s~Kgv 159 (480)
-++.+..+|+++ |.--++|+.
T Consensus 107 -~G~~LLGRVld~~G~PiD~~~~ 128 (455)
T TIGR01026 107 -VGDGLLGRVLDGLGKPIDGKGK 128 (455)
T ss_pred -CCCCCCEEEECCCCCCCCCCCC
T ss_conf -6876402448546871137777
No 236
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=45.26 E-value=7.3 Score=18.66 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEEC
Q ss_conf 999999997399789998--888898999999999999999749927999987898678865489818965899999953
Q gi|254780442|r 20 EDVINRLHEEGTDVFRIN--MSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDN 97 (480)
Q Consensus 20 ~e~i~~l~~aG~nv~RiN--~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~ 97 (480)
|.-|-.|-..||.|.-.| +||=+-+|..++.++ +|-.||+.+---.|+-|=-.+.- -|..-.+.++=|+-
T Consensus 93 paYLNAL~GkGVHvVTVNdYLA~RD~e~m~~v~~F-------LGL~VGl~~~~m~~~eRr~aY~c-DITY~TNnELGFDY 164 (904)
T TIGR00963 93 PAYLNALTGKGVHVVTVNDYLARRDAEWMGQVYRF-------LGLSVGLILSSMSPEERREAYAC-DITYGTNNELGFDY 164 (904)
T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHH-------CCCEEEEECCCCCHHHHHHHHCC-CEEEECCCCCCHHH
T ss_conf 99987651796279963504448889987899968-------49368886179985899998549-81653265420246
Q ss_pred --CCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECC
Q ss_conf --24556444221266442221133652674068422102
Q gi|254780442|r 98 --KDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCV 135 (480)
Q Consensus 98 --~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V 135 (480)
|+.....+..-. -|--|.-|-..|.||||.-+==|.|
T Consensus 165 LRDNM~~~~ee~vq-R~f~FAIIDEVDSILIDEARTPLII 203 (904)
T TIGR00963 165 LRDNMALSKEEKVQ-RPFNFAIIDEVDSILIDEARTPLII 203 (904)
T ss_pred HHHHHHCCHHHHHC-CCCCCEEEEEECCEEECCCCCCCCC
T ss_conf 66764115012101-6722268864244642333686523
No 237
>PRK08250 glutamine amidotransferase; Provisional
Probab=45.23 E-value=17 Score=15.95 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=28.7
Q ss_pred HHHHHHHHHEEEEECCCCCHHCCHHHHH----HHHHHHHHHHHHCCCEEEE---EHHHH
Q ss_conf 7888753312475222200215876736----8999999998513983998---05767
Q gi|254780442|r 229 ASEIIQLSDAVMVARGDLGVEMALELIP----GIQKKLIRIARQLGKPVVI---ATQML 280 (480)
Q Consensus 229 l~eI~~~sDgimiaRGDLg~e~~~e~vp----~~Qk~ii~~~~~~~kpviv---ATq~l 280 (480)
+.+-+...|+++|==|-.|+.-..|+.| ...+..|+.|.+.+||++= -.|+|
T Consensus 39 lP~~~~~~d~liVlGGpms~~~~~e~~p~l~l~~E~~lir~a~~~~~PvlGIClG~Qli 97 (235)
T PRK08250 39 LPENADGFDMLIVLGGPQSPRTTREECPYFDSKAEQHLINQAITARKAVVGVCLGSQLI 97 (235)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 99981025889997899877773212787470999999999998699889981677999
No 238
>PRK13937 phosphoheptose isomerase; Provisional
Probab=45.21 E-value=20 Score=15.39 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHCC-CCCEEEEECCCHHHH--HH--------HHHHCCCCCEEEEECCHHH
Q ss_conf 8789999999986104-786899970883799--99--------9841888869999299899
Q gi|254780442|r 355 GADVISSAARQIAETL-RLSAIFCYTASGATG--LR--------AARERPKLEIIALSPMIQT 406 (480)
Q Consensus 355 ~~~aIa~aav~lA~~l-~a~aIiv~T~sG~tA--~~--------iS~~RP~~pIiaiT~~~~t 406 (480)
..+.|..++-.+++.+ +-..|.++-.-|..+ .. ..+.||..|.++++.|..+
T Consensus 24 ~~~~I~~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~ 86 (192)
T PRK13937 24 LLAAIAKIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSA 86 (192)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHH
T ss_conf 499999999999999987998999968631888999999996413557898535776788287
No 239
>pfam01876 RNase_P_p30 RNase P subunit p30. This protein is part of the RNase P complex that is involved in tRNA maturation.
Probab=45.07 E-value=20 Score=15.38 Aligned_cols=91 Identities=22% Similarity=0.267 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC-CCH--HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE
Q ss_conf 445556765567789988734885325058557-734--79999986200343355532785663117888753312475
Q gi|254780442|r 165 FLTTQALTQKDREDLHAALQTCEVDWVALSFIQ-SAD--DLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMV 241 (480)
Q Consensus 165 ~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr-~~~--di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimi 241 (480)
.+++=++-+.|.+...+||+...||.|++.+.. ..- +-..++.... +++. =-| ++...+
T Consensus 24 ~~divaV~p~~~~~~~~a~~~~~vDiIs~~~~~r~~~~~~~~~~~~A~~-~gv~--~Ei-------~y~~~l-------- 85 (152)
T pfam01876 24 KYDLVAVRPGSEKALRAACENLRVDIISLDLTSRLPFGLKHKLAKLAVE-RGVA--FEI-------SLSPLL-------- 85 (152)
T ss_pred CCCEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH-CCCE--EEE-------ECHHHH--------
T ss_conf 4318999569999999998189988898146456877658999999998-7938--999-------515866--------
Q ss_pred ECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 222200215876736899999999851398399805
Q gi|254780442|r 242 ARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 242 aRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
+.|- ..-.....--+.++..++.+++|+|+++
T Consensus 86 -~~~~---~~R~~~~~~~~~li~~~r~~~~~iviSS 117 (152)
T pfam01876 86 -RRDG---YARRNFISNARKLIRLSRKYDRPIVISS 117 (152)
T ss_pred -CCCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf -2383---8899999999999999706688838847
No 240
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=45.05 E-value=20 Score=15.38 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=27.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEE
Q ss_conf 250585577347999998620034335553278566311788875331247
Q gi|254780442|r 190 WVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240 (480)
Q Consensus 190 ~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgim 240 (480)
.+++|+--+.+++..+-.+++..++++|+=-.++.. .+.+.||-++
T Consensus 93 ~i~~S~SG~t~El~~~~~~~k~~~~~ii~it~~~~S-----~Lak~sd~~l 138 (321)
T PRK11543 93 MLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTS-----PLGLAAKAVL 138 (321)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----HHHHHCCEEE
T ss_conf 999958988177887727887669868999789999-----7688269489
No 241
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.98 E-value=20 Score=15.37 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=44.5
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHC----CCCCEEEEEC---CHHHHHHHHHHCCCEEEEECCCCCHHHHH-------H
Q ss_conf 61047868999708837999998418----8886999929---98999876665393799936879999999-------9
Q gi|254780442|r 367 AETLRLSAIFCYTASGATGLRAARER----PKLEIIALSP---MIQTARRLALVWGIHCVVTEDASDSDDMV-------N 432 (480)
Q Consensus 367 A~~l~a~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~---~~~t~r~l~L~~GV~p~~~~~~~~~~~~i-------~ 432 (480)
..+..++.+|+-|-+|.||--+|.-= |.++.+.+|| +.-+.| |+.++.....+-.+ .
T Consensus 171 ~~~~~~DGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~PHsLs~R---------PlVl~~~~~I~i~v~~~~~~~~ 241 (292)
T PRK03378 171 AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSAR---------PLVINSSSTIRLRFSHRRSDLE 241 (292)
T ss_pred EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC---------CEEECCCCEEEEEECCCCCCEE
T ss_conf 8999536699966874577675269963069987279982577756789---------8898999879999836998579
Q ss_pred HHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 9999999888877887799985
Q gi|254780442|r 433 RACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 433 ~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
..++ .+..--+++||.|.+..
T Consensus 242 vs~D-Gq~~~~l~~gd~I~I~~ 262 (292)
T PRK03378 242 ISCD-SQIALPIQEGEEVLIRR 262 (292)
T ss_pred EEEC-CCCCEECCCCCEEEEEE
T ss_conf 9983-99743639999999998
No 242
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=44.89 E-value=20 Score=15.36 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=30.9
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
=+-+++.+++.+.++++ ...||.|+.-..++.+++
T Consensus 27 y~~cF~GselVdWLi~~~~~~sR~eAv~~gq~Lle~ 62 (83)
T cd04443 27 YKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQG 62 (83)
T ss_pred CCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 662427289999999768989999999999999878
No 243
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=44.64 E-value=21 Score=15.33 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=10.0
Q ss_pred HHHHHHHHHCCCCEEEECCC
Q ss_conf 77899998519968998144
Q gi|254780442|r 294 VSDVATAVFEEADAIMLSAE 313 (480)
Q Consensus 294 v~Dvanav~dG~D~imLs~E 313 (480)
..++...+..|-=-+-|||=
T Consensus 168 ~~~l~~L~~~~~v~vKlSg~ 187 (263)
T cd01311 168 FAALLKLIEEGNVWVKVSGP 187 (263)
T ss_pred HHHHHHHHHCCCEEEEECCC
T ss_conf 99999999669869996454
No 244
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=44.59 E-value=21 Score=15.33 Aligned_cols=317 Identities=16% Similarity=0.181 Sum_probs=154.5
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCH-----HHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEE--EECCCCCEEECCCC
Q ss_conf 9999999997399789998888898-----9999999999999997499279999878986788--65489818965899
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSH-----DKMCELIKKIRAVELRSRRPIGILIDLQGPKFRV--GKFANSKVDLTEGQ 91 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~-----e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~--g~~~~~~i~l~~G~ 91 (480)
+..+|+.|++.|..+. =+||-.+ ++...+-.-.+.+++.++++|...-|+-|++.+- ..++++.|-|-++
T Consensus 35 ~lpTI~~ll~~gakvv--i~SHlGRP~g~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~GeI~LLEN- 111 (397)
T cd00318 35 ALPTIKYLLEQGAKVV--LLSHLGRPKGEPNEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLEN- 111 (397)
T ss_pred HHHHHHHHHHCCCEEE--EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECC-
T ss_conf 9999999997889899--9825899999879756879999999998524212477777867999985278885898323-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99995324556444221266442221133652674068422102344541124551388087114564467854455567
Q gi|254780442|r 92 IFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQAL 171 (480)
Q Consensus 92 ~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~l 171 (480)
++|...+...+. .-.-..+.|.+.+..--.+|++|..= +- -|..-+.-+..--+|.
T Consensus 112 -vRF~~~E~~n~~-~~~~~d~~fak~La~l~DiyVNDAFg---~a------------------HR~haS~~gi~~~lps- 167 (397)
T cd00318 112 -VRFYPEEEGKRD-DDKEADEEFAKKLASLGDVYVNDAFG---TA------------------HRAHASMVGIALLLPS- 167 (397)
T ss_pred -CCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCEEEECCHH---HH------------------HHHCCCCCCCCCCCCC-
T ss_conf -101534201565-32001599999987547898742122---55------------------5625330150003741-
Q ss_pred CHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCC-C--CEEE--EEECCHHHHHHHHHHHHHHHEEEEE----
Q ss_conf 65567789988734885325058557734799999862003-4--3355--5327856631178887533124752----
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN-K--IGLM--SKIEKPRAIEYASEIIQLSDAVMVA---- 242 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~-~--~~Ii--aKIE~~~al~nl~eI~~~sDgimia---- 242 (480)
|.+..+ .+.+..+.+.+... + +-|+ |||+++-.+ ++.+++.+|.|++.
T Consensus 168 ------------------~aG~l~---ekEl~~L~~~l~~p~rP~~aIiGGaKisdKi~v--i~~l~~k~D~iiiGG~ma 224 (397)
T cd00318 168 ------------------AAGFLM---EKELKYLAKALENPERPFVAILGGAKVSDKIQV--IENLLDKVDYLIIGGGMA 224 (397)
T ss_pred ------------------CCHHHH---HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH--HHHHHHHCCEEEECHHHH
T ss_conf ------------------136999---999999998851888974999728862157999--999998478899760999
Q ss_pred ------CC-CCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH-HHCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf ------22-200215876736899999999851398399805767888-8288984034778999985199689981444
Q gi|254780442|r 243 ------RG-DLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESM-VTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 (480)
Q Consensus 243 ------RG-DLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM-~~~p~PTRaEv~Dvanav~dG~D~imLs~ET 314 (480)
+| +.|--.--++.-..-+.|+.+|.+.++.+++-..+.-+= .++...+ .+.++. .+-++. ..|-
T Consensus 225 ntFL~A~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~-~i~~~~--~ilD--- 296 (397)
T cd00318 225 FTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANT--KVVTDD-GIPDGW--MGLD--- 296 (397)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCE--EEEECC-CCCCCC--EECC---
T ss_conf 99999769977865567577999999999987549848687569994366788870--686600-266565--6401---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC
Q ss_conf 35446589999999988763010124444443203878888789999999986104786899970883799999841888
Q gi|254780442|r 315 ASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK 394 (480)
Q Consensus 315 a~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~ 394 (480)
+| -++++....++..+.. ..|.-.....+..+-...+..++.+..+... -++-.| ---|.|+..+.++-..
T Consensus 297 -IG---~~Ti~~~~~~I~~akt-I~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~-~~~~si---vGGGdT~aai~~~g~~ 367 (397)
T cd00318 297 -IG---PKTIELFAEVIRKAKT-IVWNGPMGVFEFPAFAKGTKAIADAIAAATK-AGAFSI---IGGGDTAAAAEKFGLA 367 (397)
T ss_pred -CC---HHHHHHHHHHHHHCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEE---EECHHHHHHHHHCCCC
T ss_conf -48---9999999998711888-9998981423556163899999999998455-899899---9586999999975986
Q ss_pred CCEEEEEC
Q ss_conf 86999929
Q gi|254780442|r 395 LEIIALSP 402 (480)
Q Consensus 395 ~pIiaiT~ 402 (480)
-.+--+|.
T Consensus 368 ~~~~hvST 375 (397)
T cd00318 368 DKISHVST 375 (397)
T ss_pred CCCEEEEC
T ss_conf 79607937
No 245
>KOG3303 consensus
Probab=44.50 E-value=12 Score=16.96 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=12.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 978999888889899999999999999974
Q gi|254780442|r 31 TDVFRINMSHTSHDKMCELIKKIRAVELRS 60 (480)
Q Consensus 31 ~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~ 60 (480)
.++.|+-+||...|+..++-..++++....
T Consensus 102 ps~i~~sls~~E~eyf~~Ys~~La~y~~~~ 131 (192)
T KOG3303 102 PSSIRFSLSHEEEEYFKNYSNLLAEYMGPL 131 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 178887511889999999999999986275
No 246
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=44.49 E-value=21 Score=15.32 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=11.9
Q ss_pred HHHCCCCCEEEEECCCEEEC
Q ss_conf 22113365267406842210
Q gi|254780442|r 115 FASIKIGDRLLIDDGRVKLC 134 (480)
Q Consensus 115 ~~~ik~Gd~I~idDG~i~l~ 134 (480)
...+++||.|++|.|.-.+.
T Consensus 88 a~lI~~g~~IflD~GtT~~~ 107 (251)
T PRK13509 88 SQLCNPGESVVINCGSTAFL 107 (251)
T ss_pred HHHCCCCCEEEECCCHHHHH
T ss_conf 96489999999848689999
No 247
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=44.45 E-value=21 Score=15.31 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=37.4
Q ss_pred HHHHCCCCCEECCCCCCC-----CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE-----CCCCCHHC
Q ss_conf 887348853250585577-----34799999862003433555327856631178887533124752-----22200215
Q gi|254780442|r 181 AALQTCEVDWVALSFIQS-----ADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVA-----RGDLGVEM 250 (480)
Q Consensus 181 ~a~~~~~vD~ialSfVr~-----~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimia-----RGDLg~e~ 250 (480)
.+++.+..|.+.+|-..+ .++++.+|+... .+++ |-+=--.+|+.++++.+||.+|. -|+..-++
T Consensus 166 ~~~~~~~aDaiivTG~~TG~~~~~~~l~~vk~~~~---~Pvl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~V 240 (254)
T pfam03437 166 DTIERGLADAVILSGKTTGGEVDLEELKLAKETVP---VPVL--VGSGVNLENLEELWSIADGFIVGTSIKKGGKFNNEV 240 (254)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCC---CCEE--EECCCCHHHHHHHHHHCCEEEEEHHEEECCEECCCC
T ss_conf 99982689899978730279999999999996269---9889--957989889999998789999842230588758977
Q ss_pred CHHHH
Q ss_conf 87673
Q gi|254780442|r 251 ALELI 255 (480)
Q Consensus 251 ~~e~v 255 (480)
..+++
T Consensus 241 D~~RV 245 (254)
T pfam03437 241 DIERV 245 (254)
T ss_pred CHHHH
T ss_conf 99999
No 248
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=44.41 E-value=21 Score=15.31 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
-+-|++++++.+.++++ ..+||.|+.-..++.+++
T Consensus 25 y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Lle~ 60 (81)
T cd04439 25 FPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLEN 60 (81)
T ss_pred CCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 663437089999998878889999999999999868
No 249
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=44.24 E-value=21 Score=15.29 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=6.1
Q ss_pred CCEEEEECCCEEE
Q ss_conf 6526740684221
Q gi|254780442|r 121 GDRLLIDDGRVKL 133 (480)
Q Consensus 121 Gd~I~idDG~i~l 133 (480)
||+.+=||-.|.-
T Consensus 87 GDr~~~dD~aii~ 99 (318)
T PRK05724 87 GDRAFADDKAIVG 99 (318)
T ss_pred CCCCCCCCCCEEE
T ss_conf 7845677965178
No 250
>pfam01915 Glyco_hydro_3_C Glycosyl hydrolase family 3 C terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.
Probab=44.15 E-value=21 Score=15.28 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHH-HHHHHHHHHH
Q ss_conf 6736899999999851398399805767888828898403-4778999985
Q gi|254780442|r 253 ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRA-EVSDVATAVF 302 (480)
Q Consensus 253 e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRa-Ev~Dvanav~ 302 (480)
-.+|..|+.+|+...+.+||||+- +.+.+|--- +..|-+.||+
T Consensus 115 l~L~~~q~~Li~~v~~~~~~vVvV-------l~~g~P~~l~~~~~~~~Ail 158 (223)
T pfam01915 115 LTLPGNQDELIEAVAAAGKPVVVV-------LHSGGPVDMEPWIDNVDAIL 158 (223)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE-------EECCCCCCCHHHHHHHHHHH
T ss_conf 589877999999999879898999-------84589776656887667898
No 251
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.67 E-value=21 Score=15.23 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=29.4
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHH----CCCCCEEEEECC
Q ss_conf 104786899970883799999841----888869999299
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSPM 403 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~----RP~~pIiaiT~~ 403 (480)
.+..++.+|+.|-+|.||--+|.= .|.++.+.+||-
T Consensus 178 ~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI 217 (303)
T PRK03372 178 SSFGCDGVLVSTPTGSTAYAFSAGGPVVWPELEALLVVPN 217 (303)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 9996165999578862563641699540699875999626
No 252
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=43.49 E-value=21 Score=15.21 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=78.1
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHH-----------------------
Q ss_conf 53250585577347999998620---------0343355532785663117888753-----------------------
Q gi|254780442|r 188 VDWVALSFIQSADDLLEIRKIIS---------QNKIGLMSKIEKPRAIEYASEIIQL----------------------- 235 (480)
Q Consensus 188 vD~ialSfVr~~~di~~~r~~l~---------~~~~~IiaKIE~~~al~nl~eI~~~----------------------- 235 (480)
--|+-++-.++..+-+--.+++. ...++...=|||.-|.-.+|||+-+
T Consensus 185 GpyfYLPKlEs~~EArlWndvf~~ae~~lglp~GtIkatvLIETi~AaFemeEILyeLR~h~~GLN~GRWDYifS~Ik~~ 264 (511)
T cd00727 185 GPYFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKF 264 (511)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 87584314577899999999999999974888883578863755577772799999999876422464068899999996
Q ss_pred ---HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH--HHHHHHH---------HHH
Q ss_conf ---31247522220021587673689999999985139839980576788882889840--3477899---------998
Q gi|254780442|r 236 ---SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTR--AEVSDVA---------TAV 301 (480)
Q Consensus 236 ---sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTR--aEv~Dva---------nav 301 (480)
.|.++=+|..++++.|+ +-.+.+.+++.|++.|-..|=- |.- -.|+| .|.+..| .-+
T Consensus 265 ~~~~~~vlPDR~~vtM~~pF--m~aY~~lLv~tCHkRGa~AiGG------MaA-~iP~~~d~~~n~~al~kV~~DK~rEa 335 (511)
T cd00727 265 RNHPDFVLPDRAQVTMTVPF--MRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALAKVRADKLREA 335 (511)
T ss_pred CCCCCCCCCCHHHCCCCCHH--HHHHHHHHHHHHCCCCCCCCCC------CCC-CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 64876717976655678599--9999999999970558750013------100-07589987889999999998799999
Q ss_pred HCCCCEEEEC
Q ss_conf 5199689981
Q gi|254780442|r 302 FEEADAIMLS 311 (480)
Q Consensus 302 ~dG~D~imLs 311 (480)
.+|.||-+..
T Consensus 336 ~~G~DGtWVA 345 (511)
T cd00727 336 TAGHDGTWVA 345 (511)
T ss_pred HCCCCCCEEC
T ss_conf 7699853113
No 253
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.48 E-value=21 Score=15.21 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=30.8
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHC----CCCCEEEEEC---CHHHHH
Q ss_conf 1047868999708837999998418----8886999929---989998
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARER----PKLEIIALSP---MIQTAR 408 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~---~~~t~r 408 (480)
.+..++.+|+-|-+|.||--+|.-= |.++.+.+|| +.-+.|
T Consensus 172 ~~~~~DGlIvsTPTGSTAYsLSAGGPIv~P~~~~i~ltPI~PHsLs~R 219 (291)
T PRK02155 172 YNQRADGLIVATPTGSTAYALSAGGPILHPQLQGWVLVPIAPHALSNR 219 (291)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCC
T ss_conf 999717799957885256565269965378866299983687656899
No 254
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=43.39 E-value=21 Score=15.20 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=16.4
Q ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCCC-CCCEEEEEEE
Q ss_conf 9999988887788779998522278888-6415999994
Q gi|254780442|r 435 CRIVVEQGFGKPGDRIIISAGLPLGTPG-STNMLRIAYI 472 (480)
Q Consensus 435 ~~~l~~~g~i~~GD~VVvv~G~p~~~~G-~TN~irv~~V 472 (480)
...+.++|. ++...|..+...+ ..|.+|+-.-
T Consensus 403 ~~~a~~~gv------~i~~~g~~f~~~~~~~~~~Rl~~s 435 (459)
T COG1167 403 LAAALEKGV------VVTPLGSAFSADGDPRNGLRLSFS 435 (459)
T ss_pred HHHHHHCCC------EEECCCCCCCCCCCCCCEEEEECC
T ss_conf 999998699------794588663578988982899889
No 255
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=43.35 E-value=8.6 Score=18.12 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH----EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH---------CCC----
Q ss_conf 311788875331----247522220021587673689999999985139839980576788882---------889----
Q gi|254780442|r 226 IEYASEIIQLSD----AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVT---------SPF---- 288 (480)
Q Consensus 226 l~nl~eI~~~sD----gimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~---------~p~---- 288 (480)
..+|++|+..++ |||+|= =...+--+| .+++.|++.|+++++..+=|++.+. +|-
T Consensus 226 ~~~l~~~~~~a~gr~~G~i~tt-------FaSni~Rv~-~~~~~A~k~~R~~~v~GrSm~~~~~~A~~lG~i~~p~~~ri 297 (593)
T TIGR00649 226 SELLDDIFKNAQGRKDGVIVTT-------FASNIHRVQ-QIIQIARKNGRKVAVIGRSMEKVLGIARKLGYIKLPEDARI 297 (593)
T ss_pred HHHHHHHHHCCCCCCCCEEEEE-------CHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEECCCCCEE
T ss_conf 8999998621147877359986-------011488999-99999985698299980017899999986481227875503
Q ss_pred -----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf -----8403477899998519968998144435446589999999988763010124
Q gi|254780442|r 289 -----PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSW 340 (480)
Q Consensus 289 -----PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~ 340 (480)
-+.-++.+|.|. =-.+.+.+.. -.|=|..-.|.||+.....+..+
T Consensus 298 ygsP~~~~i~~~e~~~~--P~~~~lii~T-----GsQGEp~A~L~RiAn~~h~~~~i 347 (593)
T TIGR00649 298 YGSPKNLFISLKEINKY--PKENYLIITT-----GSQGEPLAALTRIANGEHEQIRI 347 (593)
T ss_pred ECCHHHHHHHHHHHHHC--CCCCEEEEEE-----CCCCCHHHHHHHCCCCCCCCEEE
T ss_conf 13805567999999718--8863799985-----59894125550100788763100
No 256
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=43.13 E-value=22 Score=15.17 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999999851398399805767888828898403477899998519968998144
Q gi|254780442|r 258 IQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAE 313 (480)
Q Consensus 258 ~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~E 313 (480)
+-..|-..+...+.|||+= ++ -+-+ ++ .|+.-+.--|+++|.+||-
T Consensus 174 ~l~~I~~i~~~~~vPVIvK-eV-----G~Gi-s~---e~a~~l~~~Gv~~IdVsg~ 219 (351)
T PRK05437 174 WLDRIAEIVSALPVPVIVK-EV-----GFGI-SK---ETAKRLADAGVKAIDVAGA 219 (351)
T ss_pred HHHHHHHHHHHCCCCEEEE-EC-----CCCC-CH---HHHHHHHHCCCCEEEECCC
T ss_conf 9999999998679988985-21-----5788-99---9999999679999995799
No 257
>pfam02110 HK Hydroxyethylthiazole kinase family.
Probab=42.95 E-value=22 Score=15.15 Aligned_cols=45 Identities=29% Similarity=0.493 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 31178887533124752222002158767368999999998513983998
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
.+-.+|+.+.+|++.|-=|-|. .+.+... +...+.++++|||++.
T Consensus 40 ~~E~~e~~~~a~al~iNiGTl~----~~~~~~m-~~A~~~A~~~~~PvVL 84 (246)
T pfam02110 40 EEEVAELAKIAGALVINIGTLD----NYRIEAM-KAAVKSANELGRPVVL 84 (246)
T ss_pred HHHHHHHHHHCCEEEEECCCCC----HHHHHHH-HHHHHHHHHCCCCEEE
T ss_conf 7899999986280699778899----8999999-9999999972998896
No 258
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=42.80 E-value=22 Score=15.14 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCC-CCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE----EEEEECCCCEEEE
Q ss_conf 777-52699941877579999999997399789998888898999999999999999749927----9999878986788
Q gi|254780442|r 3 NLR-RIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI----GILIDLQGPKFRV 77 (480)
Q Consensus 3 ~mr-ktKIi~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i----~Il~Dl~GpkiR~ 77 (480)
.|. +-|.++-.-=.+.++|..+.-.++-.-+.|+|-.+.+..+ +.-+.+|++....+..+ ++..|- |--|++
T Consensus 2 ~MtE~EKMlaG~~Y~~~d~eL~~~R~~a~~l~~~~N~~~~~d~~--~r~~ll~~L~g~~g~~~~IepPF~cdY-G~NI~i 78 (203)
T PRK09527 2 NMSMTERIKAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVE--KRESLIKEMFATVGENAWVEPPVYFSY-GSNIHI 78 (203)
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHCCCCCCCEEECCEEEEC-CCCEEE
T ss_conf 98979998779986897989999999999999998479999999--999999998412599978969978725-479697
Q ss_pred EEC--CCCCEEECCCCEEEEECCCCCCCCCCCC-----------CCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCE
Q ss_conf 654--8981896589999995324556444221-----------2664422211336526740684221023445411
Q gi|254780442|r 78 GKF--ANSKVDLTEGQIFTLDNKDSLGSSDRVM-----------LPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF 142 (480)
Q Consensus 78 g~~--~~~~i~l~~G~~v~l~~~~~~~~~~~i~-----------i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~ 142 (480)
|+- -+....+-.+..+++..+-..|.+=.|+ ....++.+.+..||.++|..|.+.+-=+.++.+.
T Consensus 79 G~~~fiN~n~~ilD~~~I~IGd~v~iGPnV~i~t~~Hp~~~~~R~~~~~~~~pi~Ig~~vwIG~~~~I~pGv~IG~~~ 156 (203)
T PRK09527 79 GRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNS 156 (203)
T ss_pred CCCEEECCCCEEEECCCEEECCCEEECCCCEEECCCCCCCHHHHHCCCCCCCCEEECCEEEECCCCEECCCCEECCCC
T ss_conf 798798688389957637998972886997893698988988973387668885999868989999990992999997
No 259
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.78 E-value=14 Score=16.49 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCCCCCCHHHCCCCCEEEEECCCEEECCCCC
Q ss_conf 1266442221133652674068422102344
Q gi|254780442|r 108 MLPHPEIFASIKIGDRLLIDDGRVKLCVQEK 138 (480)
Q Consensus 108 ~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~ 138 (480)
-++|+. .+++++||.|.++.+++..+|+++
T Consensus 25 Rl~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 25 RLADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred EECCHH-HCCCCCCCEEEECCCEEEEEEEEE
T ss_conf 955776-627898998998388467999987
No 260
>PRK07409 threonine synthase; Validated
Probab=42.71 E-value=22 Score=15.13 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=8.7
Q ss_pred HHEEEEECCCCCHHCC
Q ss_conf 3124752222002158
Q gi|254780442|r 236 SDAVMVARGDLGVEMA 251 (480)
Q Consensus 236 sDgimiaRGDLg~e~~ 251 (480)
-|.+.+.-|.-|.=.+
T Consensus 180 PD~vv~pvG~Gg~i~g 195 (350)
T PRK07409 180 PDYLCIPVGNAGNITA 195 (350)
T ss_pred CCEEEECCCCCCHHHH
T ss_conf 9999957788822788
No 261
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.68 E-value=22 Score=15.12 Aligned_cols=123 Identities=11% Similarity=0.179 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCCEECCC--CCCCCHHHHHHHHHHHCCCCEEEEEECCHHH------H-----HHHHHHHHHH----
Q ss_conf 567789988734885325058--5577347999998620034335553278566------3-----1178887533----
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALS--FIQSADDLLEIRKIISQNKIGLMSKIEKPRA------I-----EYASEIIQLS---- 236 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialS--fVr~~~di~~~r~~l~~~~~~IiaKIE~~~a------l-----~nl~eI~~~s---- 236 (480)
++.++++..++. ++|.|.++ .+++++-+.++-+...+ +|+.-|..+.+ . -++.+.++..
T Consensus 86 Rs~e~i~~~l~~-G~~rViigT~a~~~~~~l~~~~~~f~~---~Ivv~iD~~~~~v~~~GW~~~s~~~~~d~~~~~~~~g 161 (234)
T PRK13587 86 RTKSQIMDYFAA-GINYCIVGTKGIQDTDWLKEMAHTFPG---RIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIP 161 (234)
T ss_pred CCHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCEEEECCCCEECCCCHHHHHHHHHHCC
T ss_conf 759999999976-899999888130286999999986667---7687120238545445751425867999999997439
Q ss_pred -HEEE---EECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf -1247---522220021587673689999999985139839980576788882889840347789999851996899814
Q gi|254780442|r 237 -DAVM---VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 237 -Dgim---iaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
..++ |+|--.-.-..+|- +++ + +...+.|||.+.-+= -..|+...-.-|++++.+.-
T Consensus 162 ~~~il~TdI~rDGtl~G~n~el---~~~-i---~~~~~~pvIaSGGv~------------sl~Di~~L~~~gv~GvIvGk 222 (234)
T PRK13587 162 LGGIIYTDIAKDGKMSGPNFEL---TGQ-L---VKATTIPVIASGGIR------------HQQDIQRLASLNVHAAIIGK 222 (234)
T ss_pred CCEEEEECCCCCCCCCCCCHHH---HHH-H---HHHCCCCEEEECCCC------------CHHHHHHHHHCCCCEEEEEE
T ss_conf 8789984026657455799999---999-9---976799999989989------------99999999988998999997
Q ss_pred CCCCCCC
Q ss_conf 4435446
Q gi|254780442|r 313 ETASGSY 319 (480)
Q Consensus 313 ETa~G~y 319 (480)
--.-|+|
T Consensus 223 AlYeg~f 229 (234)
T PRK13587 223 AAHQASF 229 (234)
T ss_pred ECCCCCH
T ss_conf 5017822
No 262
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=42.60 E-value=22 Score=15.11 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.1
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
=+-|++++++.++++.+ ..+||.|+.-+..+.++.
T Consensus 34 Y~~cF~GselVdWLv~~ge~~~ReeAv~lgq~Lle~ 69 (93)
T cd04440 34 YKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNN 69 (93)
T ss_pred CCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 652217289999999778869999999999999867
No 263
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=42.53 E-value=22 Score=15.11 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH-------------HHCCCCEEEE---------EECCHHHHHHHHHH
Q ss_conf 6778998873488532505855773479999986-------------2003433555---------32785663117888
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALSFIQSADDLLEIRKI-------------ISQNKIGLMS---------KIEKPRAIEYASEI 232 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~-------------l~~~~~~Iia---------KIE~~~al~nl~eI 232 (480)
|.+++.+..++ ++|.+.|-||-+-+-|+.+-++ |.+.+++|.. ||+-. ++-+|=+
T Consensus 99 dE~~~eklk~~-~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e--~kaIdiL 175 (275)
T COG1856 99 DESDLEKLKEE-LVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGE--FKAIDIL 175 (275)
T ss_pred CHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCH--HHHHHHH
T ss_conf 17889999871-68689986127748999997688637777889999997094253059997316852333--8788998
Q ss_pred H-HHHHEEEEE--CCCCCHHCCHHHHHHHHHH--HHHHHHHC-CCEEEEEHHHHHHHHHCCCCC---HHHHHHHHHHHHC
Q ss_conf 7-533124752--2220021587673689999--99998513-983998057678888288984---0347789999851
Q gi|254780442|r 233 I-QLSDAVMVA--RGDLGVEMALELIPGIQKK--LIRIARQL-GKPVVIATQMLESMVTSPFPT---RAEVSDVATAVFE 303 (480)
Q Consensus 233 ~-~~sDgimia--RGDLg~e~~~e~vp~~Qk~--ii~~~~~~-~kpvivATq~leSM~~~p~PT---RaEv~Dvanav~d 303 (480)
. ..-|.+.+. =---|.++...-=|..|+. .++.||+. .-|+++- .-+|- |-|.- +-|+.-
T Consensus 176 ~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iG---------CmrP~Ge~rvk~d--~~av~~ 244 (275)
T COG1856 176 VNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIG---------CMRPRGEWRVKLD--KEAVLA 244 (275)
T ss_pred HCCCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---------ECCCCCHHHHHHH--HHHHHC
T ss_conf 60799739999981388501057797698999999999998589974674---------1476753678788--888871
Q ss_pred CCCEEEE
Q ss_conf 9968998
Q gi|254780442|r 304 EADAIML 310 (480)
Q Consensus 304 G~D~imL 310 (480)
|+|+|-.
T Consensus 245 gVd~It~ 251 (275)
T COG1856 245 GVDRITF 251 (275)
T ss_pred CCCEEEC
T ss_conf 8850445
No 264
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=41.93 E-value=23 Score=15.04 Aligned_cols=218 Identities=12% Similarity=0.147 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC--CCE-EECC--CCE
Q ss_conf 79999999997399789998888898999999999999999749927999987898678865489--818-9658--999
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN--SKV-DLTE--GQI 92 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~--~~i-~l~~--G~~ 92 (480)
.-.+.|..-.+.|--|--+|+. +.|+.+.++ +++++.+.|+ |+.=.+| .++...+.. .-+ .+.+ .--
T Consensus 5 s~k~lL~~A~~~~yAVgaFNv~--n~e~~~Avi----~AAee~~sPv-Ilq~s~~-~~~~~g~~~~~~~~~~~a~~~~VP 76 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTT--NLETTISIL----NAIERSGLPN-FIQIAPT-NAQLSGYDYIYEIVKRHADKMDVP 76 (283)
T ss_pred CHHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCHH-HHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 5899999999889379987889--999999999----9999978698-9997750-675559999999999999986998
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCC
Q ss_conf 99953245564442212664422211336-5267406842210--------234-4541124551388087114564467
Q gi|254780442|r 93 FTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFP 162 (480)
Q Consensus 93 v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip 162 (480)
|.+..|.. -++..+.+.++.| +.|.+|-..+.|+ |.+ .+.-.+..+.+-|..-+..-+ +..
T Consensus 77 V~lHLDH~--------~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~G~ed~-~~~ 147 (283)
T PRK07998 77 VSLHLDHG--------KTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTQEAVDFCKSYGVPVEAELGAILGKEDD-HVS 147 (283)
T ss_pred EEEECCCC--------CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC-CCC
T ss_conf 99975888--------999999999973998898609989999999999999999977699799985353575477-777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 85445556765567789988734885325058557734799999862003433555327856631178887533124752
Q gi|254780442|r 163 DTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 163 ~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimia 242 (480)
.. ...|+- .+..+|. +.-++|++|+|+=...- . |=+...-++-|++|-+++|-=+|=
T Consensus 148 ~~----~~~T~P-eea~~Fv-~~TgvD~LAvaiGt~HG-------------~----~~~p~l~~~~l~~I~~~~~iPLVL 204 (283)
T PRK07998 148 EA----DCKTEP-EKVKTFV-ERTGCDMLAVSIGNVHG-------------L----DDIPRIDIPLLKRIAEVSPVPLVI 204 (283)
T ss_pred CC----CCCCCH-HHHHHHH-HHHCCCEEEEECCCCCC-------------C----CCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 52----038999-9999999-98688999640466456-------------7----878863899999988647987898
Q ss_pred CCCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 2220021587673689999999985139-839980576788882
Q gi|254780442|r 243 RGDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 243 RGDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~~ 285 (480)
-|-=| +|.|+ |++|.+.| ..+=+.|++--.+..
T Consensus 205 HGgSG--i~~e~--------i~~ai~~Gi~KiNi~Tel~~a~~~ 238 (283)
T PRK07998 205 HGGSG--IPPDI--------LRSFVNYRVAKVNIASDLRKAFIT 238 (283)
T ss_pred ECCCC--CCHHH--------HHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 69999--99999--------999998698699958689999999
No 265
>PRK08508 biotin synthase; Provisional
Probab=41.78 E-value=23 Score=15.03 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHCCCCEEEEECCCCCH--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCE-EECC-CCEEEEECCC
Q ss_conf 99997399789998888898--999999999999999749927999987898678865489818-9658-9999995324
Q gi|254780442|r 24 NRLHEEGTDVFRINMSHTSH--DKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKV-DLTE-GQIFTLDNKD 99 (480)
Q Consensus 24 ~~l~~aG~nv~RiN~SHg~~--e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i-~l~~-G~~v~l~~~~ 99 (480)
+...+.|+.-|-+-.|.... ++...+.+.+|++.++. ..+.+.+-+ |.+..... .|++ |=.-...+
T Consensus 50 ~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v~~Ik~~~-~~l~~c~sl-------G~l~~e~~~~LkeAGvdrY~hN-- 119 (279)
T PRK08508 50 KMARANGALGFCLVTAGRGLDDKKLEYVAKAAKAVKKEV-PGLHLIACN-------GMASVEQLKELKKAGIFSYNHN-- 119 (279)
T ss_pred HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEEC-------CCCCHHHHHHHHHCCCCEECCC--
T ss_conf 999975997689998236887544999999999986337-993576117-------8579999999998397123076--
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 55644422126644222113365267406842210234454112455138808711456446785445556765567789
Q gi|254780442|r 100 SLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179 (480)
Q Consensus 100 ~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di 179 (480)
+-. .+++|..+.+... .+| ++ +.++.- ...=-.|..||.++= .=|.+|..+.
T Consensus 120 -------lET-s~~~y~~I~tTht--y~d-Rl--~tl~~~-k~aGl~vCsGgIiGl--------------GEt~edrve~ 171 (279)
T PRK08508 120 -------LET-SKEFFPKICTTHS--WEE-RF--QTCLNA-KEAGLGLCSGGIFGL--------------GESWEDRISM 171 (279)
T ss_pred -------CCC-CHHHHCCCCCCCC--HHH-HH--HHHHHH-HHCCCEEECCCEEEC--------------CCCHHHHHHH
T ss_conf -------676-7687576589988--899-99--999999-981994867854478--------------9998999999
Q ss_pred HHHHHCCCCCEECCCCC
Q ss_conf 98873488532505855
Q gi|254780442|r 180 HAALQTCEVDWVALSFI 196 (480)
Q Consensus 180 ~~a~~~~~vD~ialSfV 196 (480)
.|.++++++|.|.+.|-
T Consensus 172 a~~L~eL~~dsVPIN~l 188 (279)
T PRK08508 172 LKSLASLSPHSTPINFF 188 (279)
T ss_pred HHHHHHCCCCEECCCCC
T ss_conf 99998389987515676
No 266
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=41.62 E-value=23 Score=15.01 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.5
Q ss_pred EEEEECCCHHHH-----HHHHHHCC-CCCEEEEECCHH
Q ss_conf 899970883799-----99984188-886999929989
Q gi|254780442|r 374 AIFCYTASGATG-----LRAARERP-KLEIIALSPMIQ 405 (480)
Q Consensus 374 aIiv~T~sG~tA-----~~iS~~RP-~~pIiaiT~~~~ 405 (480)
..|+.|.||.|| .+.+|-|- ..+++++|+-+.
T Consensus 355 L~I~ISQSGETADTL~ALr~aK~~G~~~~~L~IcNv~g 392 (628)
T TIGR01135 355 LVIAISQSGETADTLEALRLAKELGLYAKTLGICNVPG 392 (628)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 59999748610889999999984798515899983687
No 267
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.61 E-value=23 Score=15.01 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCCEECCCC--CCCCHHHHHHHHHHH
Q ss_conf 677899887348853250585--577347999998620
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALSF--IQSADDLLEIRKIIS 210 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialSf--Vr~~~di~~~r~~l~ 210 (480)
+.++++..++ .++|.|.++- +++++-+.++-+..+
T Consensus 84 s~e~~~~~l~-~GadkVvigS~a~~n~~~i~~~~~~~g 120 (241)
T PRK00748 84 DLETVEAYLD-AGVARVIIGTAAVKNPELVKEACKKFP 120 (241)
T ss_pred CHHHHHHHHH-CCCCEEEECCHHHHCHHHHHHHHHHCC
T ss_conf 4999999997-697758864710339689999986235
No 268
>TIGR00303 TIGR00303 conserved hypothetical protein TIGR00303; InterPro: IPR002805 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin . It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop , . Vitamin B_12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes . The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin . Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) . One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction . This entry represents a group of proteins predicted to have nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity..
Probab=41.49 E-value=13 Score=16.75 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=44.6
Q ss_pred CCCCE---ECCCCCCCCHHHHH--HHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHHHEEEEECCCCCHHCCHHHHHHHH
Q ss_conf 88532---50585577347999--998620034335553278566311-7888753312475222200215876736899
Q gi|254780442|r 186 CEVDW---VALSFIQSADDLLE--IRKIISQNKIGLMSKIEKPRAIEY-ASEIIQLSDAVMVARGDLGVEMALELIPGIQ 259 (480)
Q Consensus 186 ~~vD~---ialSfVr~~~di~~--~r~~l~~~~~~IiaKIE~~~al~n-l~eI~~~sDgimiaRGDLg~e~~~e~vp~~Q 259 (480)
+++|- |.-|...|+.|.+. +|+-|++ .+ ||..+.=.| |+=+--+-|=+|.+=.- +-++.
T Consensus 168 LG~dA~g~VsSS~p~nph~lK~~vV~~gL~~--AG----~e~~~s~~~~~~vl~AVGDpm~~~VAG--~A~~~------- 232 (350)
T TIGR00303 168 LGYDAEGKVSSSMPHNPHELKRKVVREGLKK--AG----IEKKESSLDPFEVLEAVGDPMMPVVAG--IAIGS------- 232 (350)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CC----CCCCCCCCCHHHHHHHCCCCCHHHHHH--HHHHH-------
T ss_conf 3737585043788887288999999998875--68----766788735799997168931387761--56421-------
Q ss_pred HHHHHHHHHCCCEEEEE--HHHHH
Q ss_conf 99999985139839980--57678
Q gi|254780442|r 260 KKLIRIARQLGKPVVIA--TQMLE 281 (480)
Q Consensus 260 k~ii~~~~~~~kpvivA--Tq~le 281 (480)
.+++||||.| |||+-
T Consensus 233 -------~e~~~PV~LAGGTQM~A 249 (350)
T TIGR00303 233 -------SERSKPVILAGGTQMLA 249 (350)
T ss_pred -------CCCCCCEEECCCHHHHH
T ss_conf -------02588717647578999
No 269
>PRK00023 cmk cytidylate kinase; Provisional
Probab=41.49 E-value=23 Score=15.00 Aligned_cols=39 Identities=8% Similarity=0.286 Sum_probs=29.4
Q ss_pred EEEEEC-CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 699941-87757999999999739978999888889899999999
Q gi|254780442|r 8 KIISTL-GPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIK 51 (480)
Q Consensus 8 KIi~Tl-GPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~ 51 (480)
|||.|| |||.+-..++.+++-. ++||.|-+.-..-..+.
T Consensus 4 ~iIIaIDGpagSGKST~ak~lA~-----~L~~~yldTG~~YRa~a 43 (225)
T PRK00023 4 APVIAIDGPAGSGKGTVAKILAK-----KLGFHYLDTGAMYRAVA 43 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH-----HHCCCEECHHHHHHHHH
T ss_conf 97899658986787899999999-----93988764109999999
No 270
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=41.29 E-value=23 Score=14.98 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=71.9
Q ss_pred CHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 22211336-5267406842210--------234-4541124551388087114564467854455567655677899887
Q gi|254780442|r 114 IFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAAL 183 (480)
Q Consensus 114 l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~ 183 (480)
+.+.++-| +.|.+|-..+.|+ |.+ .+...+..+.+-|..-+..-++.-... -..+|+- .+..+|.
T Consensus 88 ~~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~---~~~~T~p-eea~~Fv- 162 (283)
T pfam01116 88 ILEAIEAGFSSVMIDGSHLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSED---EALYTDP-EEAKEFV- 162 (283)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC---CCCCCCH-HHHHHHH-
T ss_conf 9999981998698638979999999999999999987398489975003675667677763---2225899-9999999-
Q ss_pred HCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHH
Q ss_conf 34885325058557734799999862003433555327856631178887533124752222002158767368999999
Q gi|254780442|r 184 QTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLI 263 (480)
Q Consensus 184 ~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii 263 (480)
+.-++|++|+|+=... + ++..-+-..-++-|++|-+..|-=+|=-|-=| +|.|+ +
T Consensus 163 ~~TgvD~LAvaiG~~H-------------G--~yk~~~p~L~~~~L~~I~~~~~iPLVlHGgSG--~~~e~--------~ 217 (283)
T pfam01116 163 ERTGVDSLAVAIGNVH-------------G--VYKPLEPKLDFDRLKEIQAAVDVPLVLHGGSG--VPDEE--------I 217 (283)
T ss_pred HHHCCCEEEEECCCCC-------------C--CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC--CCHHH--------H
T ss_conf 9869887876436534-------------4--46899986699999999987399878658999--99999--------9
Q ss_pred HHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 9985139-839980576788882
Q gi|254780442|r 264 RIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 264 ~~~~~~~-kpvivATq~leSM~~ 285 (480)
++|-+.| ..+=+.|.+...+..
T Consensus 218 ~~ai~~Gi~KiNi~T~l~~a~~~ 240 (283)
T pfam01116 218 RKAIKLGVAKINIDTDLQWAFTK 240 (283)
T ss_pred HHHHHCCCEEEEECHHHHHHHHH
T ss_conf 99998396699857599999999
No 271
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=41.27 E-value=23 Score=14.97 Aligned_cols=28 Identities=21% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 6899999999851398399805767888
Q gi|254780442|r 256 PGIQKKLIRIARQLGKPVVIATQMLESM 283 (480)
Q Consensus 256 p~~Qk~ii~~~~~~~kpvivATq~leSM 283 (480)
-.+|.+++..|++++-|+|-.+++=+|.
T Consensus 161 R~Iq~ylv~~A~~~~ipvI~n~~~d~s~ 188 (197)
T PRK12339 161 RTIMDYSIADARGYNIKVIDTDNYREAR 188 (197)
T ss_pred HHHHHHHHHHHHHCCCCEECCCCHHHHH
T ss_conf 9999999998887399855377289999
No 272
>pfam01079 Hint Hint module. This is an alignment of the Hint module in the Hedgehog proteins. It does not include any Inteins which also possess the Hint module.
Probab=40.98 E-value=23 Score=14.94 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=25.9
Q ss_pred CEEECCCCEEEEECCCCC----CCCCCCCCCCCCCHHHCCCCCEEEEE
Q ss_conf 189658999999532455----64442212664422211336526740
Q gi|254780442|r 84 KVDLTEGQIFTLDNKDSL----GSSDRVMLPHPEIFASIKIGDRLLID 127 (480)
Q Consensus 84 ~i~l~~G~~v~l~~~~~~----~~~~~i~i~y~~l~~~ik~Gd~I~id 127 (480)
.|+.+.|+.+.+|..... ++.+.-.-.-+-|...+++||.|++-
T Consensus 68 ~I~T~~g~~l~LT~~HLifv~~~~~~~~~~~~~vfAs~V~~Gd~v~v~ 115 (214)
T pfam01079 68 VIETENGRKLTLTPAHLIFVADCNTTSSALFEAVFASDVRPGDYVLVQ 115 (214)
T ss_pred EEEECCCCEEEECHHHEEEEECCCCCCCCCCCEEECCCCCCCCEEEEE
T ss_conf 999589986997325879982278887766206872227789889999
No 273
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=40.91 E-value=23 Score=14.94 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=26.7
Q ss_pred EECCCC-CHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 936879-99999999999999888877887799985
Q gi|254780442|r 420 VTEDAS-DSDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 420 ~~~~~~-~~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
.+++.. .....+-.++..+.+.|.+++||+|++++
T Consensus 280 ~~~~~GNt~sasipi~L~~~~~~g~i~~Gd~vll~~ 315 (329)
T PRK07204 280 IFEDYGNMISASIPVALFEAIKQKKVQRGNKILLLG 315 (329)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 363118089888999999999849999969999999
No 274
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.86 E-value=23 Score=14.93 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHH-HHHHCCCCCEEE-EECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECC
Q ss_conf 8789999999-986104786899-97088379999984188886999929989998766653937999368
Q gi|254780442|r 355 GADVISSAAR-QIAETLRLSAIF-CYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTED 423 (480)
Q Consensus 355 ~~~aIa~aav-~lA~~l~a~aIi-v~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~ 423 (480)
.+|-+..+.+ +.-...++.+.+ +--.-+....++++..|++-|+.+|+...+.+.|.=.||-.|.+--+
T Consensus 40 ~aD~~~~~ilGe~R~k~~~aa~a~v~~~a~~aI~rIr~IHPPAHiIVIs~r~dvy~el~~~fgkl~elkgy 110 (125)
T COG1844 40 LADEILSSILGEVRKKCKVAAVAEVEEPASKAIGRIRKIHPPAHIIVISPRHDVYKELLRLFGKLPELKGY 110 (125)
T ss_pred HHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHHCCC
T ss_conf 67999999987774236324122103752789999872399823999678746899999983666755165
No 275
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.78 E-value=23 Score=14.92 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=20.8
Q ss_pred CCCEEEEECCCHHHHHHH-----HHHCCCCCEEEEE
Q ss_conf 786899970883799999-----8418888699992
Q gi|254780442|r 371 RLSAIFCYTASGATGLRA-----ARERPKLEIIALS 401 (480)
Q Consensus 371 ~a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT 401 (480)
+-+.++++|.||+|..++ ++ +-.+|++++|
T Consensus 47 ~~D~vi~iS~SG~t~e~~~~~~~ak-~~g~~vi~IT 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIAK-ELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-HCCCCEEEEE
T ss_conf 9998999979979889999999999-8799899983
No 276
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=40.78 E-value=23 Score=14.92 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=35.5
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHCCCEEEEECC
Q ss_conf 10478689997088379999984188----886999929989998766653937999368
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARERP----KLEIIALSPMIQTARRLALVWGIHCVVTED 423 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~ 423 (480)
....++.+++.|-+|.||--+|.--| ..+.+.+||--. ..-..-|+..+.
T Consensus 144 ~~~~~DGlivsTptGSTaY~lSaGGpiv~p~~~~~~itpi~p------h~l~~rplVlp~ 197 (243)
T pfam01513 144 ESIRGDGLIVSTPTGSTAYSLSAGGPIISPGVLAILLTPICP------HSLSSRPIVVPS 197 (243)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCC------CCCCCCCEEECC
T ss_conf 996145699967985678885279962678775179876576------546899889899
No 277
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=40.63 E-value=24 Score=14.91 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHEEEEECCCCC---HHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 5663117888753312475222200---21587673689999999985139839980
Q gi|254780442|r 223 PRAIEYASEIIQLSDAVMVARGDLG---VEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 223 ~~al~nl~eI~~~sDgimiaRGDLg---~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
+-|+..||+++. | +.+|||- .--+.-|.-.++.-....|.+.|+||.+-
T Consensus 178 ~TG~~~LD~~~~---G--l~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~f 229 (421)
T TIGR03600 178 STGLPKLDRLTN---G--LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF 229 (421)
T ss_pred CCCCHHHHHHHC---C--CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 788078999836---9--998868999854678745999999999998669838999
No 278
>PRK07683 aminotransferase A; Validated
Probab=40.60 E-value=24 Score=14.90 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 99999999888877887799985222788886415999994
Q gi|254780442|r 432 NRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 432 ~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~V 472 (480)
+.+...+.+.| |.++-|..+|.. +.+.+|+...
T Consensus 332 ~~~~~ll~~~g-------V~v~PG~~Fg~~-g~g~~Rlsfa 364 (387)
T PRK07683 332 DFALDLVEEAG-------LAVVPGSAFSEY-GEGYVRLSYA 364 (387)
T ss_pred HHHHHHHHHCC-------EEEECCHHHCCC-CCCEEEEEEE
T ss_conf 99999998399-------999878422889-9886999971
No 279
>PRK07369 dihydroorotase; Provisional
Probab=40.37 E-value=24 Score=14.88 Aligned_cols=217 Identities=17% Similarity=0.192 Sum_probs=102.1
Q ss_pred EEEEECCCEEECCCCCCC-----CEEE--EEECCCCEEECCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCEEC-C
Q ss_conf 267406842210234454-----1124--551388087114564467854455567655-677899887348853250-5
Q gi|254780442|r 123 RLLIDDGRVKLCVQEKGI-----GFIK--CKVIAGISIADRKGISFPDTFLTTQALTQK-DREDLHAALQTCEVDWVA-L 193 (480)
Q Consensus 123 ~I~idDG~i~l~V~~~~~-----~~i~--c~V~~gG~l~s~Kgvnip~~~i~l~~ltek-D~~di~~a~~~~~vD~ia-l 193 (480)
-|+|+||+|.-.-....+ +.|- .+.+-.|.+=.+- ++..|..+.+ |++.-.-|+-.+|+-.|. +
T Consensus 23 DI~I~dGkI~~i~~~~~~~~~~~~vIDa~G~~vlPG~ID~Hv-------H~~~pg~~~ked~~tgt~AAa~GGvTtv~~m 95 (419)
T PRK07369 23 DVLIEDGRIQAIEPHLAPIPPDTQIIDASGLILGPGLVDLYS-------HSGEPGFEERETLASLAAAAAAGGFTRVAIL 95 (419)
T ss_pred EEEEECCEEEEECCCCCCCCCCCEEEECCCCEEECCEEECCC-------CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 899989999995678778999987997899989799997874-------5799986430429889999981897699989
Q ss_pred CCC----CCCHHHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHH
Q ss_conf 855----77347999998620034----3355532785663117888753312475222200215876736899999999
Q gi|254780442|r 194 SFI----QSADDLLEIRKIISQNK----IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRI 265 (480)
Q Consensus 194 SfV----r~~~di~~~r~~l~~~~----~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~ 265 (480)
++. .+.+.+..+++...+.. ...+.-+..-..-+.+.|+-+....=.++=.| + .+++..... .+++..
T Consensus 96 Pnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~el~~l~~~Gv~~f~~-~--~~~~~~~~l-~~~l~~ 171 (419)
T PRK07369 96 PDTSPPLDNPATLARLQQQLQGPSPPPQLLFWGALTLGGQGKQLTELAELAAAGVVGFTD-G--QPLENLALL-RRLLEY 171 (419)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCEEECC-C--CCCCCHHHH-HHHHHH
T ss_conf 899999885999999999960069973999971245386245677666676079689048-9--654899999-999999
Q ss_pred HHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHH--HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 851398399805767888828898403477899--998519968998144435446589999999988763010124444
Q gi|254780442|r 266 ARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA--TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEM 343 (480)
Q Consensus 266 ~~~~~kpvivATq~leSM~~~p~PTRaEv~Dva--nav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~ 343 (480)
+...|+|+++-.+- .++. +...+|.+...+.
T Consensus 172 ~~~~~~~v~~h~ed---------------~~l~~~~~~~~g~~~~~~~-------------------------------- 204 (419)
T PRK07369 172 LAPLGKPVALWPCD---------------RQLAGNGVMREGPDALRLG-------------------------------- 204 (419)
T ss_pred HHHCCCEEEEECCC---------------HHHHHCHHHHCCCCCHHCC--------------------------------
T ss_conf 98639918995068---------------9887272654486402028--------------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 443203878888789999999986104786899970883799999841888-8699992
Q gi|254780442|r 344 RSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK-LEIIALS 401 (480)
Q Consensus 344 ~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~-~pIiaiT 401 (480)
....|...-..+++. ++.+|...+++.-|+...|+.+..++.++|.+ .||.+=|
T Consensus 205 ---~~~rP~~~E~~av~r-~i~lA~~~g~~lhi~HvSs~~~~e~i~~ak~~G~~vt~Et 259 (419)
T PRK07369 205 ---LPGIPASAETAALAA-LLELVAAIGTPVHLMRVSTARSVELIAQAKARGLPITAST 259 (419)
T ss_pred ---CCCCCHHHHHHHHHH-HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf ---998844554699999-9999887538489961685899999998886398089646
No 280
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.27 E-value=23 Score=14.93 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCHH
Q ss_conf 786899970883799999-----84188886999929989
Q gi|254780442|r 371 RLSAIFCYTASGATGLRA-----ARERPKLEIIALSPMIQ 405 (480)
Q Consensus 371 ~a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~~ 405 (480)
.-+.+|.+|+||+|...+ ++-+ .++++++|.++.
T Consensus 46 ~~~lvI~iS~SG~t~e~i~a~~~a~~~-g~~~i~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEK-GAKTVAITNVVG 84 (126)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 985999986897980078899999982-994898706999
No 281
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=40.18 E-value=15 Score=16.44 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCC-CCEEEEECCCHHHHH
Q ss_conf 999999861047-868999708837999
Q gi|254780442|r 360 SSAARQIAETLR-LSAIFCYTASGATGL 386 (480)
Q Consensus 360 a~aav~lA~~l~-a~aIiv~T~sG~tA~ 386 (480)
..+|+++|-.++ |++|+=.|+||.|-+
T Consensus 139 l~GavE~aP~~G~AD~IvDiv~TG~TLk 166 (212)
T PRK01686 139 LYGSVELAPLVGLADAIVDLVSTGNTLR 166 (212)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 4152235677884238999847768899
No 282
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=40.06 E-value=24 Score=14.84 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHCC-CCCEEEEECCCHHHH-------HHH---HHHCCCCCEEEEECCHHH--------------H
Q ss_conf 888789999999986104-786899970883799-------999---841888869999299899--------------9
Q gi|254780442|r 353 ETGADVISSAARQIAETL-RLSAIFCYTASGATG-------LRA---ARERPKLEIIALSPMIQT--------------A 407 (480)
Q Consensus 353 ~~~~~aIa~aav~lA~~l-~a~aIiv~T~sG~tA-------~~i---S~~RP~~pIiaiT~~~~t--------------~ 407 (480)
+..++.|+.++-.++..+ +-..|+++-.-|..| -++ .+-||..|.++++.|..+ +
T Consensus 21 e~l~~~I~~aa~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~~~vF~ 100 (196)
T PRK10886 21 EALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYA 100 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHH
T ss_conf 87199999999999999987997999868474889999999996465568988405663267056543116677999999
Q ss_pred HHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 8766653--937999368799999999999999988887788779998522
Q gi|254780442|r 408 RRLALVW--GIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGL 456 (480)
Q Consensus 408 r~l~L~~--GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~ 456 (480)
||+.-+- |=.-+..-...+. ..+-.|+++++++|. .+|...|.
T Consensus 101 rQl~alg~~gDiLi~iStSGnS-~Nii~Ai~~A~~~g~-----~~i~ltG~ 145 (196)
T PRK10886 101 KQVRALGHAGDVLLAISTRGNS-RDIVKAVEAAVTRDM-----TIVALTGY 145 (196)
T ss_pred HHHHHHCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCC-----EEEEEECC
T ss_conf 9999856799989999489999-899999999998899-----89999768
No 283
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.93 E-value=24 Score=14.83 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=30.3
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHC----CCCCEEEEECCH
Q ss_conf 1047868999708837999998418----888699992998
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARER----PKLEIIALSPMI 404 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~~~ 404 (480)
....++.+|+-|-+|.||--+|.-= |..+.+.+||--
T Consensus 133 ~~~r~DGlIvSTPTGSTAY~lSAGGPIv~P~~~~~~itPI~ 173 (259)
T PRK00561 133 EKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELN 173 (259)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECC
T ss_conf 88853789996898637767535995635998749999226
No 284
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.65 E-value=24 Score=14.80 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=39.4
Q ss_pred CEEEEECCCHHHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 68999708837999998418----88869999299899987666539379993687999999999
Q gi|254780442|r 373 SAIFCYTASGATGLRAARER----PKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNR 433 (480)
Q Consensus 373 ~aIiv~T~sG~tA~~iS~~R----P~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~ 433 (480)
+.+++.|.||+|.--++-++ -.++++++|..-+ +..+...+|+.-+..|........+-+
T Consensus 45 ~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~itsGG~-L~~~a~~~~~p~v~iP~g~~PR~a~g~ 108 (119)
T cd05017 45 TLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGK-LLEMAREHGVPVIIIPKGLQPRAAFPY 108 (119)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHCCCCEEECCCCCCCHHHHHH
T ss_conf 7899992897968999999999985990999849955-999998879998987999995799999
No 285
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=39.26 E-value=25 Score=14.76 Aligned_cols=219 Identities=18% Similarity=0.213 Sum_probs=99.5
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-CCE--EECC--CCEE
Q ss_conf 9999999997399789998888898999999999999999749927999987898678865489-818--9658--9999
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN-SKV--DLTE--GQIF 93 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~-~~i--~l~~--G~~v 93 (480)
..+.|..-.+.|--|-=+|.. +.|+.+.++ +++++.+.|+ |+.-.+|- ++...+.. ... .+.+ .--|
T Consensus 6 ~k~lL~~A~~~~yAV~AfNv~--n~e~~~Avi----~AAee~~sPv-Ilq~s~~~-~~~~~~~~~~~~~~~~a~~~~VPV 77 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIH--NAETIQAIL----EVCSEMRSPV-ILAGTPGT-FKHIALEEIYALCSAYSTTYNMPL 77 (286)
T ss_pred HHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCHHH-HHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999999999879579998889--999999999----9999978998-99937537-766699999999999999879999
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCC
Q ss_conf 9953245564442212664422211336-5267406842210--------234-45411245513880871145644678
Q gi|254780442|r 94 TLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPD 163 (480)
Q Consensus 94 ~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~ 163 (480)
.+..|... ++..+.+.+..| +.|.+|...+.|+ |.+ .+...+..+.+-|..=+..-++...
T Consensus 78 ~lHLDH~~--------~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~- 148 (286)
T PRK12738 78 ALHLDHHE--------SLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVD- 148 (286)
T ss_pred EEECCCCC--------CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-
T ss_conf 99899999--------999999999779987987389999999999999999998473997888641346657776666-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 54455567655677899887348853250585577347999998620034335553278566311788875331247522
Q gi|254780442|r 164 TFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 164 ~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR 243 (480)
..-..+|+- .+..+|. +.-++|.+|.||=...- .+.+ +-+.-++-|++|-+..|-=+|=-
T Consensus 149 --~~~~~~T~p-eea~~Fv-~~TgvD~LAvaiGn~HG---------------~y~~-~p~l~~~~L~~I~~~~~iPLVLH 208 (286)
T PRK12738 149 --AESAFLTDP-QEAKRFV-ELTGVDSLAVAIGTAHG---------------LYSK-TPKIDFQRLAEIREVVDVPLVLH 208 (286)
T ss_pred --CCCCCCCCH-HHHHHHH-HHHCCCEEHHHHCCCCC---------------CCCC-CCCCCHHHHHHHHHCCCCCEEEE
T ss_conf --522357999-9999999-98797812233235467---------------7799-99478999999973079998976
Q ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 220021587673689999999985139-83998057678888
Q gi|254780442|r 244 GDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 244 GDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
|-=| +|.|+ |++|.++| ..|=+.|.+-..+.
T Consensus 209 GgSG--~~~e~--------i~~ai~~Gi~KvNi~T~l~~a~~ 240 (286)
T PRK12738 209 GASD--VPDEF--------VRRTIELGVTKVNVATELKIAFA 240 (286)
T ss_pred CCCC--CCHHH--------HHHHHHCCEEEEEECHHHHHHHH
T ss_conf 9999--99999--------99999769069984858999999
No 286
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=39.14 E-value=25 Score=14.75 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCEE
Q ss_conf 9997399789998888898999999999999999749-92799998789867
Q gi|254780442|r 25 RLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSR-RPIGILIDLQGPKF 75 (480)
Q Consensus 25 ~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~-~~i~Il~Dl~Gpki 75 (480)
+=.++|+++.=+|+-.+-.++...+.+.++.+..+.. ..+++|+|..-|+.
T Consensus 393 ~Qv~~GA~vLDVNv~~~~~D~~~~m~~~~~~l~~~~~i~~vPl~IDSs~~~v 444 (1229)
T PRK09490 393 QQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEV 444 (1229)
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
T ss_conf 9997589788742787653469999999999843665477884684888899
No 287
>PRK07094 biotin synthase; Provisional
Probab=38.94 E-value=25 Score=14.72 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=9.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 888898999999999999999
Q gi|254780442|r 38 MSHTSHDKMCELIKKIRAVEL 58 (480)
Q Consensus 38 ~SHg~~e~~~~~i~~ir~~~~ 58 (480)
+++.+.++..++++.-+++..
T Consensus 10 L~~~d~~~l~~L~~~A~~iR~ 30 (323)
T PRK07094 10 LSNDDEEELKYLFKAADEVRK 30 (323)
T ss_pred HCCCCHHHHHHHHHHHHHHHH
T ss_conf 615998999999999999999
No 288
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.76 E-value=25 Score=14.70 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=27.6
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHH----CCCCCEEEEECC
Q ss_conf 104786899970883799999841----888869999299
Q gi|254780442|r 368 ETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSPM 403 (480)
Q Consensus 368 ~~l~a~aIiv~T~sG~tA~~iS~~----RP~~pIiaiT~~ 403 (480)
.+..++.+|+-|-||.||--+|.= .|.++.+.+||-
T Consensus 177 ~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~vltPI 216 (305)
T PRK02649 177 VDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPI 216 (305)
T ss_pred EEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 9996477999578870450553699540799875999536
No 289
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=38.50 E-value=25 Score=14.68 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHCCCEEEEEC---CCC--CHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 998999876665393799936---879--9999999999999988887788779998522
Q gi|254780442|r 402 PMIQTARRLALVWGIHCVVTE---DAS--DSDDMVNRACRIVVEQGFGKPGDRIIISAGL 456 (480)
Q Consensus 402 ~~~~t~r~l~L~~GV~p~~~~---~~~--~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~ 456 (480)
+.....|.|..|--..|+--. +.+ -...+++.|-+.+++.+ . +++.|+||.
T Consensus 438 ~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee~-~---~ki~viSgi 493 (515)
T COG1243 438 DKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREEG-A---KKILVISGI 493 (515)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHC-C---CCEEEEECC
T ss_conf 6313554320202102566674301005478999999999987613-5---617998333
No 290
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=38.42 E-value=25 Score=14.67 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCEEEEEEC-CCCCEEECCCC-EEEEECCCCCCCCCCCCCCCCCCHH-HCCCCCEEE
Q ss_conf 8986788654-89818965899-9999532455644422126644222-113365267
Q gi|254780442|r 71 QGPKFRVGKF-ANSKVDLTEGQ-IFTLDNKDSLGSSDRVMLPHPEIFA-SIKIGDRLL 125 (480)
Q Consensus 71 ~GpkiR~g~~-~~~~i~l~~G~-~v~l~~~~~~~~~~~i~i~y~~l~~-~ik~Gd~I~ 125 (480)
.|..+|+|-+ ..+.+.-..+. .+.|...+ ..+.+.|.|.+++. ..+.|.-+.
T Consensus 56 ~g~~iRlGGlV~~gSv~r~~~~l~v~F~ITD---~~~~i~V~Y~GilPDLFrEgqGVV 110 (159)
T PRK13150 56 VGQRLRVGGMVMPGSVRRDPDSLKVNFSLYD---AEGSVTVSYEGILPDLFREGQGVV 110 (159)
T ss_pred CCCEEEEEEEEECCCEEECCCCCEEEEEEEC---CCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 7965998149834828976997489999946---884799998377875000688089
No 291
>PRK12458 glutathione synthetase; Provisional
Probab=38.42 E-value=25 Score=14.67 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.7
Q ss_pred CEEEECCCCCCCCCH
Q ss_conf 689981444354465
Q gi|254780442|r 306 DAIMLSAETASGSYP 320 (480)
Q Consensus 306 D~imLs~ETa~G~yP 320 (480)
+|+.+.|=--+|.|-
T Consensus 283 ~gl~fvGiDvIG~~L 297 (349)
T PRK12458 283 DGLFFVGLDIVGDKL 297 (349)
T ss_pred CCCEEEEEEEECCCE
T ss_conf 799899998617845
No 292
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.28 E-value=25 Score=14.65 Aligned_cols=127 Identities=16% Similarity=0.228 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHCCCCCEECCCC--CCCCHHHHHHHHHHHCCCCEEEEEECCHHH-----------HHHHHHHHHH-----
Q ss_conf 5677899887348853250585--577347999998620034335553278566-----------3117888753-----
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALSF--IQSADDLLEIRKIISQNKIGLMSKIEKPRA-----------IEYASEIIQL----- 235 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialSf--Vr~~~di~~~r~~l~~~~~~IiaKIE~~~a-----------l~nl~eI~~~----- 235 (480)
++.++++..++ .++|-+.+.- +++++-+.++-+..++.+ |+.-|+.+.+ -.++.|.++.
T Consensus 85 rs~~~i~~~l~-~Ga~kvvigs~~~~~~~~~~~i~~~~G~~~--ivvsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~~g 161 (240)
T PRK13585 85 RSVEDAASLLD-LGVDRVILGTAAIENPELVRELSDEFGSER--VMVSLDAKDGEVVIEGWTESTGKDPVEWAQRFEELG 161 (240)
T ss_pred CCHHHHHHHHH-CCCCEEEECCCCHHCCHHHHHHHHHHCCCE--EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 87999999997-699899939811318428899998739721--799999306502324765678863557778888638
Q ss_pred HHEEEE---ECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 312475---22220021587673689999999985139839980576788882889840347789999851996899814
Q gi|254780442|r 236 SDAVMV---ARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 236 sDgimi---aRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
...+++ +|--..--..++-+ -+.++....|+|.+.-+- ...|+...-.-|++|+.+..
T Consensus 162 ~~eii~tdI~~dGt~~G~d~~~~-------~~i~~~~~~pviasGGv~------------s~~di~~l~~~g~~gvivG~ 222 (240)
T PRK13585 162 AGSILFTNVDVEGLLQGVNPEPV-------RELVDSVDIPVIASGGVT------------SLDDVKALKEAGAAGVVVGS 222 (240)
T ss_pred CCEEEEEEECCHHHHCCCCHHHH-------HHHHHHCCCCEEEECCCC------------CHHHHHHHHHCCCCEEEEEH
T ss_conf 73589864233223257898999-------999986899999988999------------99999999978997899876
Q ss_pred CCCCCCCHHH
Q ss_conf 4435446589
Q gi|254780442|r 313 ETASGSYPVD 322 (480)
Q Consensus 313 ETa~G~yP~~ 322 (480)
==.-|++..+
T Consensus 223 Al~~g~i~l~ 232 (240)
T PRK13585 223 ALYKGKFTLE 232 (240)
T ss_pred HHHCCCCCHH
T ss_conf 8767997899
No 293
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=38.26 E-value=25 Score=14.65 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=16.5
Q ss_pred EEEEEEECCCCC------CCCCEEEEEEECH
Q ss_conf 999852227888------8641599999450
Q gi|254780442|r 450 IIISAGLPLGTP------GSTNMLRIAYIGA 474 (480)
Q Consensus 450 VVvv~G~p~~~~------G~TN~irv~~Vg~ 474 (480)
|.++-|..|... .+.|++|+-...+
T Consensus 364 V~vvPG~~F~~g~~~~~~~~~~~lRlsfa~~ 394 (416)
T PRK09440 364 VLIVPGHYFFPGLDEPWPHTHQCIRMSYVQD 394 (416)
T ss_pred EEEEECHHHCCCCCCCCCCCCCEEEEEECCC
T ss_conf 7998264317999876557788699982799
No 294
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=38.16 E-value=21 Score=15.34 Aligned_cols=122 Identities=23% Similarity=0.279 Sum_probs=67.9
Q ss_pred EEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 55138808711456446785445556765567789988734885325058557734799999862003433555327856
Q gi|254780442|r 145 CKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPR 224 (480)
Q Consensus 145 c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~ 224 (480)
..-=-||+|.+.+.|.- ++.. .+.|+--.+.+.+|.+ +.+.+..++.-+.+-. =+..
T Consensus 93 n~RWLGGMLTNf~Tirk-----Si~k-----L~~lE~~~~~g~~~~L------tKKE~~~L~Re~~KL~-------k~Lg 149 (227)
T TIGR01011 93 NQRWLGGMLTNFKTIRK-----SIKK-----LKKLEKMEEDGTFDVL------TKKEILMLSREKEKLE-------KNLG 149 (227)
T ss_pred CCCCCCCCCHHHHHHHH-----HHHH-----HHHHHHHHHHCCCCCC------CCCCHHHHHHHHHHHH-------HHHH
T ss_conf 13334640024799999-----9999-----9999987761331247------7000776789999986-------5530
Q ss_pred HHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE--EHHHHHHHHHCCCCCHHH--------H
Q ss_conf 631178887533124752222002158767368999999998513983998--057678888288984034--------7
Q gi|254780442|r 225 AIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI--ATQMLESMVTSPFPTRAE--------V 294 (480)
Q Consensus 225 al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv--ATq~leSM~~~p~PTRaE--------v 294 (480)
|++|+. +.=|.|+| ++..-|++ -|..|+++|-||+- -|+===.-++.|.|--=. +
T Consensus 150 GIk~M~---~lPd~l~v------iD~~~E~I------Av~EA~kLgIPvvA~vDTNCdPd~vD~~IPgNDDairSi~L~~ 214 (227)
T TIGR01011 150 GIKDMK---KLPDLLFV------IDPRKEKI------AVAEARKLGIPVVAIVDTNCDPDVVDYPIPGNDDAIRSIRLLT 214 (227)
T ss_pred HHHHHH---CCCCEEEE------ECCCCCHH------HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 025453---16970899------74821068------9999733799789870478888866502579730589999999
Q ss_pred HHHHHHHHCC
Q ss_conf 7899998519
Q gi|254780442|r 295 SDVATAVFEE 304 (480)
Q Consensus 295 ~Dvanav~dG 304 (480)
+=+|+||++|
T Consensus 215 ~~~AdAv~Eg 224 (227)
T TIGR01011 215 SLIADAVLEG 224 (227)
T ss_pred HHHHHHHHHH
T ss_conf 9999999865
No 295
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=37.94 E-value=26 Score=14.62 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=29.8
Q ss_pred CCEEEEEHHHHHHHHHC--CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828--898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS--PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~--p~PTRaEv~Dvanav~dG 304 (480)
-+-+++.+++.+.|+++ -..||.|+.++.+..++.
T Consensus 26 y~~cFiG~e~V~WL~~~~~~~~tR~eAv~lgq~Ll~~ 62 (83)
T cd04449 26 PSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNE 62 (83)
T ss_pred CCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 8651347999999998471558999999999999988
No 296
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=37.80 E-value=26 Score=14.60 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=37.3
Q ss_pred ECCCCCCC----HHHHHHHHHCCCCEEEEECCCCC--------HH----HHHHHHHHHHHHHHHCCCCEEEEEECCCCEE
Q ss_conf 41877579----99999999739978999888889--------89----9999999999999974992799998789867
Q gi|254780442|r 12 TLGPSSFS----EDVINRLHEEGTDVFRINMSHTS--------HD----KMCELIKKIRAVELRSRRPIGILIDLQGPKF 75 (480)
Q Consensus 12 TlGPas~~----~e~i~~l~~aG~nv~RiN~SHg~--------~e----~~~~~i~~ir~~~~~~~~~i~Il~Dl~Gpki 75 (480)
.++.+... .+.+..+-++|+|..||.+++-. ++ ...+.++.+=+.+.+ .-+.+++|+-|+..
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~--~gi~V~iD~H~~~~ 141 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKK--LGIYVLIDLHGYPG 141 (407)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCCCC
T ss_conf 6662133422268899999973888797342275530467889672255089999999999985--69269997445776
No 297
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=37.75 E-value=26 Score=14.59 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=39.0
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999739978999888889899999999999999974992
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~ 63 (480)
-.+.++.++++|++.+-+-.-+.+.++..+.+..++++....+.+
T Consensus 14 ~~~~l~~~l~~gv~~iqlR~k~~~~~~~~~~a~~~~~~~~~~~~~ 58 (196)
T cd00564 14 LLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 999999999859999998679989999999999999999980997
No 298
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=37.52 E-value=26 Score=14.57 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 3117888753312475222200215876736899999999851398399805
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
-+|++++++..|-|+.+-.+ +.....+-+.|.++++|.|.+.
T Consensus 82 ~~~~~~~~~~~DvVi~~~Dn----------~~~r~~ln~~c~~~~ip~i~~~ 123 (134)
T pfam00899 82 PENLEELLKGADLVVDALDN----------FAARYLLNDACVKRGIPLISAG 123 (134)
T ss_pred HHHHHHCCCCCCEEEECCCC----------HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 77876426448899999899----------9999999999998599899955
No 299
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=37.45 E-value=26 Score=14.56 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHH
Q ss_conf 67655677899887348853250585577347999998620034335553278566311788875331247522220021
Q gi|254780442|r 170 ALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVE 249 (480)
Q Consensus 170 ~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e 249 (480)
.+|+-+ +..+|. +.-++|++|+||=...- .+..-+-..-++-|++|-++.|-=+|=-|-=|
T Consensus 146 ~~T~pe-ea~~Fv-~~TgvD~LAvaiGn~HG---------------~yk~~~p~L~~~~L~~I~~~~~vPLVlHGgSG-- 206 (276)
T cd00947 146 LLTDPE-EAEEFV-EETGVDALAVAIGTSHG---------------AYKGGEPKLDFDRLKEIAERVNVPLVLHGGSG-- 206 (276)
T ss_pred CCCCHH-HHHHHH-HHHCCCEEEEECCCCCC---------------CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC--
T ss_conf 348999-999999-98598878764164344---------------56899986488999999997399879757999--
Q ss_pred CCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 587673689999999985139-839980576788882
Q gi|254780442|r 250 MALELIPGIQKKLIRIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 250 ~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~~ 285 (480)
+|.|+ +++|-++| ..+=+.|.+...+..
T Consensus 207 ~~~e~--------i~~ai~~Gi~KiNi~T~l~~a~~~ 235 (276)
T cd00947 207 IPDEQ--------IRKAIKLGVCKININTDLRLAFTA 235 (276)
T ss_pred CCHHH--------HHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 99999--------999998497599867389999999
No 300
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=37.43 E-value=26 Score=14.56 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEE----CCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHHHEEEEEC
Q ss_conf 765567789988734885325----0585577347999998620034335553278566---311788875331247522
Q gi|254780442|r 171 LTQKDREDLHAALQTCEVDWV----ALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRA---IEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 171 ltekD~~di~~a~~~~~vD~i----alSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~a---l~nl~eI~~~sDgimiaR 243 (480)
.+-=|...|+.. .+.++|+ +-||+|...+|..++.- .-.++++-++|=..- |+|=|=|+-.||||+=|
T Consensus 663 FsTlDL~~iDL~--~g~~~F~KvGavpSFiKRG~~V~vI~~~--~LPiG~~~~vd~e~~~~~L~~GD~ivm~SDGvLE~- 737 (794)
T TIGR02865 663 FSTLDLSVIDLY--TGQAEFVKVGAVPSFIKRGAKVEVIRSS--NLPIGILDEVDVELVRKKLKNGDLIVMVSDGVLEA- 737 (794)
T ss_pred HHHHHHHHHCCC--CCEEEEEEECCCCCEEEECCEEEEEEEC--CCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHC-
T ss_conf 577678874477--6327899961612516667889998627--89846545323430012337998799812313330-
Q ss_pred CCCCHHCCHHHHHHHHHHHHHHHH--HCCCEEEEEHHHHHH
Q ss_conf 220021587673689999999985--139839980576788
Q gi|254780442|r 244 GDLGVEMALELIPGIQKKLIRIAR--QLGKPVVIATQMLES 282 (480)
Q Consensus 244 GDLg~e~~~e~vp~~Qk~ii~~~~--~~~kpvivATq~leS 282 (480)
|.-|-.-|. ...|+++.=. ...+|=.+|=.+||.
T Consensus 738 --l~g~~~~e~---k~~W~~~~l~e~~~~~P~E~Ae~~l~~ 773 (794)
T TIGR02865 738 --LEGEKEVEG---KVLWLVRFLKETDTNDPEEIAEYLLEK 773 (794)
T ss_pred --CCCCHHHCC---HHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf --587300116---288999996136778958899999999
No 301
>KOG2733 consensus
Probab=37.38 E-value=26 Score=14.55 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998888778
Q gi|254780442|r 429 DMVNRACRIVVEQGFGKP 446 (480)
Q Consensus 429 ~~i~~a~~~l~~~g~i~~ 446 (480)
-+++.|+.++.++...-+
T Consensus 373 ~vlsaalt~L~~~~~lpk 390 (423)
T KOG2733 373 CVLSAALTLLKDKDKLPK 390 (423)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999877641887
No 302
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=37.00 E-value=27 Score=14.51 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=12.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 26999418775799999999973997899
Q gi|254780442|r 7 IKIISTLGPSSFSEDVINRLHEEGTDVFR 35 (480)
Q Consensus 7 tKIi~TlGPas~~~e~i~~l~~aG~nv~R 35 (480)
++||-+.=-..-+++.+-+-+..|+|..-
T Consensus 30 vRiIrv~CsGrvn~~fvl~Al~~GaDGV~ 58 (132)
T COG1908 30 VRIIRVMCSGRVNPEFVLKALRKGADGVL 58 (132)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 37999632674189999999973898689
No 303
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=36.91 E-value=27 Score=14.50 Aligned_cols=46 Identities=35% Similarity=0.530 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 631178887533124752222002158767368999999998513983998
Q gi|254780442|r 225 AIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 225 al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+.+-.+|..+.+|++.|-=|-|.-| ... .-+..++.+|+.|+|++.
T Consensus 45 ~~eE~~e~~kia~AL~INIGTL~~~----~~~-~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 45 APEEVEEFAKIADALLINIGTLSAE----RIQ-AMRAAIKAANESGKPVVL 90 (265)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCHH----HHH-HHHHHHHHHHHCCCCEEE
T ss_conf 8789999997507038960469867----899-999999998752998786
No 304
>TIGR00057 TIGR00057 Sua5/YciO/YrdC/YwlC family protein; InterPro: IPR004388 This entry includes the Sua5, YciO, YrdC and YwlC proteins. The yrdC family of genes codes for proteins that occur both independently and as a domain in proteins that have been implicated in regulation. An example for the latter case is the sua5 gene from yeast. Sua5 was identified as a suppressor of a translation initiation defect in cytochrome c and is required for normal growth in yeast . However, the function of the Sua5 protein remains unknown; Sua5 could act either at the transcriptional or the post-transcriptional levels to compensate for an aberrant translation start codon in the cyc gene. The crystal structure of the YrdC protein from Escherichia coli was determined at a resolution of 2.0 A. It structure suggests that YrdC may be a nucleic acid binding protein. An investigation of YrdC's binding affinities for single- and double-stranded RNA and DNA fragments as well as tRNAs demonstrates that YrdC binds preferentially to double-stranded RNA . .
Probab=36.81 E-value=27 Score=14.49 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=48.0
Q ss_pred HHHEEEE--ECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 3312475--22220021587673689999999985139839980576788882889840347789999851996899814
Q gi|254780442|r 235 LSDAVMV--ARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 235 ~sDgimi--aRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
..|-++= .||-.|+-+|.+.++ .+.....|+|++...=+| -..|.+|.|++-.+.+-+-.-+|.+.=.|
T Consensus 106 ~p~~~~~G~~r~tvgiR~P~~~ia------~~L~~~~g~Pi~~~SANl---sg~p~~~~s~~e~~~~~L~~~Vd~iid~g 176 (215)
T TIGR00057 106 IPRLVSGGSKRGTVGIRVPDHPIA------LELLEELGKPIVAPSANL---SGKPSATMSDVEEIVDELDKLVDLIIDGG 176 (215)
T ss_pred CCCCCCCCCCCCEEEEEECCCHHH------HHHHHHCCCCEEEECCCC---CCCCCCCCCCHHHHHHHHCCEEEEEEECC
T ss_conf 664001678877027860885799------999996389867622678---85687655788999986137034788078
Q ss_pred C
Q ss_conf 4
Q gi|254780442|r 313 E 313 (480)
Q Consensus 313 E 313 (480)
+
T Consensus 177 ~ 177 (215)
T TIGR00057 177 P 177 (215)
T ss_pred C
T ss_conf 5
No 305
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.61 E-value=27 Score=14.47 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=70.0
Q ss_pred CHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 22211336-5267406842210--------234-4541124551388087114564467854455567655677899887
Q gi|254780442|r 114 IFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAAL 183 (480)
Q Consensus 114 l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~ 183 (480)
+-+.++.| +.|.+|-....|+ |.+ .+.-.+..+.+-|..-+..-++..-. .-..+|+-+ +..+|.
T Consensus 90 ~~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~---~~~~~T~pe-ea~~Fv- 164 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDE---KDAMYTNPD-AAAEFV- 164 (284)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC---CHHHCCCHH-HHHHHH-
T ss_conf 999998199879870999999999999999999864528869996311257677766664---111317999-999999-
Q ss_pred HCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHH
Q ss_conf 34885325058557734799999862003433555327856631178887533124752222002158767368999999
Q gi|254780442|r 184 QTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLI 263 (480)
Q Consensus 184 ~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii 263 (480)
+.-++|++|+|+=...-- + |=+-+.-++.|.+|-++.+-=+|=-|-=| +|.|+ |
T Consensus 165 ~~TgvD~LAvaiGt~HG~---------------y-k~~p~L~~d~L~~I~~~~~iPLVLHGgSG--~~~e~--------i 218 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGL---------------Y-KGEPKLDFDRLEEIREKVSIPLVLHGASG--VPDED--------V 218 (284)
T ss_pred HHHCCCEEEECCCCCCCC---------------C-CCCCCCCHHHHHHHHHHCCCCEEEECCCC--CCHHH--------H
T ss_conf 996989870003753567---------------5-99985789999999986399989668999--99999--------9
Q ss_pred HHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 9985139-83998057678888
Q gi|254780442|r 264 RIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 264 ~~~~~~~-kpvivATq~leSM~ 284 (480)
++|.+.| ..+=+.|.+-..+.
T Consensus 219 ~~ai~~Gi~KiNi~T~l~~a~~ 240 (284)
T PRK12737 219 KKAISLGICKVNVATELKIAFS 240 (284)
T ss_pred HHHHHCCEEEEEECHHHHHHHH
T ss_conf 9999779589985858999999
No 306
>PRK08006 replicative DNA helicase; Provisional
Probab=36.60 E-value=27 Score=14.47 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=30.1
Q ss_pred EEECCHHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 53278566311788875331247522220---02158767368999999998513983998
Q gi|254780442|r 218 SKIEKPRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 218 aKIE~~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
.-|.| |+..||.++. | +.+||| |..-+.-|--+.+......|...|+||.+
T Consensus 205 ~Gi~T--Gf~~LD~~t~---G--l~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~ 258 (471)
T PRK08006 205 TGVNT--GYDDLNKKTA---G--LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLI 258 (471)
T ss_pred CCCCC--CHHHHHHHHC---C--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 43668--8388986416---8--82173899994699876999999999999866995799
No 307
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase; InterPro: IPR007566 This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea..
Probab=36.59 E-value=27 Score=14.47 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=103.6
Q ss_pred CCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 22126644222113365267406842210234454112455138808711456446785445556765567789988734
Q gi|254780442|r 106 RVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQT 185 (480)
Q Consensus 106 ~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~ 185 (480)
++.-.|.++|++...|.-++| .++|=+-.......+++.- +| ...+. ..|... .|+.+.
T Consensus 63 kLls~~~dfF~~~~lG~D~FL-----T~RvPNp~~E~~E~k~L~e-tL--------~~ip~------~~D~~~-~~~~~~ 121 (549)
T TIGR02751 63 KLLSRYYDFFKEHILGKDLFL-----TYRVPNPEIEKAEAKLLLE-TL--------ESIPR------SYDVAR-EFYDER 121 (549)
T ss_pred HHHHCCCCCCCCCCCCCEEEE-----ECCCCCHHHHHHHHHHHHH-HH--------HHHHH------HHHHHH-HHCCCC
T ss_conf 654056412224778850477-----3368985663147999999-98--------77777------899998-720368
Q ss_pred ---CCCCEECCCCCCCCHHHHHHHHHHHC--------------------------CCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf ---88532505855773479999986200--------------------------3433555327856631178887533
Q gi|254780442|r 186 ---CEVDWVALSFIQSADDLLEIRKIISQ--------------------------NKIGLMSKIEKPRAIEYASEIIQLS 236 (480)
Q Consensus 186 ---~~vD~ialSfVr~~~di~~~r~~l~~--------------------------~~~~IiaKIE~~~al~nl~eI~~~s 236 (480)
.=+-+| |.+++++++|..+.++..+ ..+.||.=||.++++-|.++|++.-
T Consensus 122 ~~aPIFEvI-LPMTts~~e~~~v~~~y~~~v~g~~~~~l~~~dv~v~e~~ge~~p~~I~vIPLiED~d~lL~a~~I~~~Y 200 (549)
T TIGR02751 122 IIAPIFEVI-LPMTTSAEEILNVHEYYEKAVAGKDEIELYDEDVTVKEWVGEFKPKKIRVIPLIEDKDSLLNADEIVKEY 200 (549)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 766400275-5877898999999999998752035666631763698612553787204315525848884379999999
Q ss_pred ----H---E-------EEEECCCCCHHCCHHHHHHHHHHHHHHHH----HCCCEEEE---EHHHHHHHHHCCCCCHHH-H
Q ss_conf ----1---2-------47522220021587673689999999985----13983998---057678888288984034-7
Q gi|254780442|r 237 ----D---A-------VMVARGDLGVEMALELIPGIQKKLIRIAR----QLGKPVVI---ATQMLESMVTSPFPTRAE-V 294 (480)
Q Consensus 237 ----D---g-------imiaRGDLg~e~~~e~vp~~Qk~ii~~~~----~~~kpviv---ATq~leSM~~~p~PTRaE-v 294 (480)
+ | |-+||-|=++-.|.=-=-+.-|.-|..-. ..|-|++- |. ----.-|-+|-++| +
T Consensus 201 ~~~~~~~fG~~~~y~RVFlARSDPAlnYG~~~AvL~~K~Al~~l~elsee~g~~~yPI~G~G--S~PFRG~lsP~n~~~~ 278 (549)
T TIGR02751 201 AEAIEKRFGADPEYLRVFLARSDPALNYGMIAAVLLNKYALSRLYELSEETGISIYPIIGAG--SLPFRGHLSPENIERV 278 (549)
T ss_pred HHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHHHHHH
T ss_conf 99999982886213013304652332114589999999999885445454068724301687--8877887888899999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCC------CCHHHHHHHHHHHHHHHHC
Q ss_conf 78999985199689981444354------4658999999998876301
Q gi|254780442|r 295 SDVATAVFEEADAIMLSAETASG------SYPVDAVRTMSLVASSAER 336 (480)
Q Consensus 295 ~Dvanav~dG~D~imLs~ETa~G------~yP~~~v~~~~~i~~~~E~ 336 (480)
.+=| .|+ .|.+= .||.+-|+-.=+.+++...
T Consensus 279 ~~EY----~gv-------~TfTvQSAFkYDy~~~~V~~~I~~~~~~~~ 315 (549)
T TIGR02751 279 LDEY----PGV-------YTFTVQSAFKYDYPKEEVKKAIRLINEKAP 315 (549)
T ss_pred HHHC----CCC-------CCEEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 9750----687-------416874101212875899999999986053
No 308
>PRK06840 hypothetical protein; Validated
Probab=36.44 E-value=27 Score=14.45 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.1
Q ss_pred ECCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 368799-9999999999999888877887799985
Q gi|254780442|r 421 TEDASD-SDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 421 ~~~~~~-~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
+....+ ....+-.++..+.++|.+++||+|++++
T Consensus 287 ~~~~GNt~sasiplaL~~a~~~g~l~~Gd~vll~g 321 (337)
T PRK06840 287 LEEYGHMGQIDQILSLHLALEQGKLKDGDLVVLVS 321 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 02677317778999999999809999959999999
No 309
>TIGR01079 rplX_bact ribosomal protein L24; InterPro: IPR003256 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L24 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. This domain is found in L24 and L26 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=36.35 E-value=27 Score=14.44 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=13.4
Q ss_pred CCCEEECCCCCCCCCCCCCCC
Q ss_conf 880871145644678544555
Q gi|254780442|r 149 AGISIADRKGISFPDTFLTTQ 169 (480)
Q Consensus 149 ~gG~l~s~Kgvnip~~~i~l~ 169 (480)
+||.+.--.++++.+.-+-.|
T Consensus 57 ~GGi~~~EaPIh~SNVm~~~~ 77 (109)
T TIGR01079 57 EGGIIEKEAPIHISNVMLFDP 77 (109)
T ss_pred CCCCCCEECCCCCCCEEEECC
T ss_conf 788101622345342144435
No 310
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=36.34 E-value=27 Score=14.44 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=77.4
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECC
Q ss_conf 99418775799999999973997899988888989999999999999997499279999878986788654898189658
Q gi|254780442|r 10 ISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTE 89 (480)
Q Consensus 10 i~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~ 89 (480)
.-|=||..-.+++++.|... .++|-+.+ ..++++.+++--++. + + ...
T Consensus 2 L~tPGP~~~~~~V~~Am~~~-------~~~hR~~~-F~~~~~~~~~~L~~~------~--------------~----~~~ 49 (356)
T cd06451 2 LLIPGPSNVPPRVLKAMNRP-------MLGHRSPE-FLALMDEILEGLRYV------F--------------Q----TEN 49 (356)
T ss_pred CCCCCCCCCCHHHHHHHCCC-------CCCCCCHH-HHHHHHHHHHHHHHH------H--------------C----CCC
T ss_conf 77589998889999985799-------98867889-999999999999999------5--------------8----999
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEE-ECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCC
Q ss_conf 9999995324556444221266442221133652674-068422102344541124551388087114564467854455
Q gi|254780442|r 90 GQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLI-DDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTT 168 (480)
Q Consensus 90 G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~i-dDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l 168 (480)
++.+.|+.. ..+.-+.+ +..-+++||++++ ..|...-+..+.- .+.|+++ ..+..
T Consensus 50 ~~~v~~~gs-gt~a~ea~------~~n~~~~~~kvlv~~~G~fg~r~~~~a---------------~~~g~~~--~~i~~ 105 (356)
T cd06451 50 GLTFLLSGS-GTGAMEAA------LSNLLEPGDKVLVGVNGVFGDRWADMA---------------ERYGADV--DVVEK 105 (356)
T ss_pred CCEEEEECC-HHHHHHHH------HHHCCCCCCCEEEEEEEECCCCHHHHH---------------HHCCCCE--EEEEC
T ss_conf 848999577-08999999------985268888147885304054167644---------------1159723--99868
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEECCCCCCC----CHHHHHHHHHHHCCCCEEE
Q ss_conf 567655677899887348853250585577----3479999986200343355
Q gi|254780442|r 169 QALTQKDREDLHAALQTCEVDWVALSFIQS----ADDLLEIRKIISQNKIGLM 217 (480)
Q Consensus 169 ~~ltekD~~di~~a~~~~~vD~ialSfVr~----~~di~~~r~~l~~~~~~Ii 217 (480)
+.-..-|.+.++-++++.++++|++.++.+ -.|+.++.+++.+++..++
T Consensus 106 ~~~~~~~~~~v~~~l~~~~~~~v~~~h~etstG~~~~l~~i~~~~~~~~~~~~ 158 (356)
T cd06451 106 PWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLI 158 (356)
T ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 99997898999988633896589996653651014775889998741572799
No 311
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=36.26 E-value=27 Score=14.43 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHCCCEEEEEC
Q ss_conf 6665393799936
Q gi|254780442|r 410 LALVWGIHCVVTE 422 (480)
Q Consensus 410 l~L~~GV~p~~~~ 422 (480)
+.|-++++++..|
T Consensus 218 lMle~s~YSVISP 230 (322)
T CHL00198 218 LMLEYAVYTVATP 230 (322)
T ss_pred EEECCEEEEECCH
T ss_conf 6452517885488
No 312
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=36.14 E-value=18 Score=15.82 Aligned_cols=27 Identities=26% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCC-CCEEEEECCCHHHHH
Q ss_conf 999999861047-868999708837999
Q gi|254780442|r 360 SSAARQIAETLR-LSAIFCYTASGATGL 386 (480)
Q Consensus 360 a~aav~lA~~l~-a~aIiv~T~sG~tA~ 386 (480)
..+|+++|-.++ |++||=.|+||+|.+
T Consensus 159 ~~GavE~aP~~GlaD~IVDiv~TG~TLk 186 (226)
T PRK13583 159 SLGATEGAPAAGSAEIIVDITSTGETLR 186 (226)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 7770213566787348999848758899
No 313
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.04 E-value=27 Score=14.41 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCCEEEEC---CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 778999985199689981---444354465899999999887630
Q gi|254780442|r 294 VSDVATAVFEEADAIMLS---AETASGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 294 v~Dvanav~dG~D~imLs---~ETa~G~yP~~~v~~~~~i~~~~E 335 (480)
+.++..|+.+|+|+|-+- +---.|+| .+..+.+..++.+++
T Consensus 77 ~~ev~~Ai~~GAdeid~vi~~~~~~~~~~-~~~~~~i~~v~~~~~ 120 (231)
T pfam01791 77 VAEAEEAIALGADEVDMVVNIGADGSEDE-EQVLAEIAAVKEACH 120 (231)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHH
T ss_conf 88799999879988999972465789559-999999999998631
No 314
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.92 E-value=28 Score=14.39 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC-CCCCCC-----HHHHHHHHHHHC-CCCEEEEEECCHHHHH
Q ss_conf 145644678544555676556778998873488532505-855773-----479999986200-3433555327856631
Q gi|254780442|r 155 DRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVAL-SFIQSA-----DDLLEIRKIISQ-NKIGLMSKIEKPRAIE 227 (480)
Q Consensus 155 s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ial-SfVr~~-----~di~~~r~~l~~-~~~~IiaKIE~~~al~ 227 (480)
.|-|..-|+.. ++..++..|...+.+.+||.|-+ |||... .|-.++-..+.. .+...-+-+-+..+++
T Consensus 12 lRDG~Q~~~~~-----~s~e~K~~ia~~L~~~Gv~~IEvgsfvspk~vP~~~d~~ev~~~i~~~~~~~~~~l~~n~~g~~ 86 (287)
T PRK05692 12 PRDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTPNLKGLE 86 (287)
T ss_pred CCCCCCCCCCC-----CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEEECCCHHHHH
T ss_conf 98667798998-----4999999999999984999999668778230213167999998764067967866436404279
Q ss_pred HHHHHHHHHHEE--EEECCCC----CHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHH---HHHHH
Q ss_conf 178887533124--7522220----02158767368999999998513983998057678888288984034---77899
Q gi|254780442|r 228 YASEIIQLSDAV--MVARGDL----GVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAE---VSDVA 298 (480)
Q Consensus 228 nl~eI~~~sDgi--miaRGDL----g~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaE---v~Dva 298 (480)
.--+ ...|.| .++=-|+ -.....++.-..-+++++.+++.|+.+-...++ ...+|.-.|.+ +.+++
T Consensus 87 ~A~~--~g~~~i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~---afg~p~~~~~~~~~l~~~~ 161 (287)
T PRK05692 87 AALA--AGADEVAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADVA 161 (287)
T ss_pred HHHH--CCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCCCCCCCCHHHHHHHH
T ss_conf 9997--7989899997417999998747999999999999999999769879998740---1367646864899999999
Q ss_pred HHHH-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9985-1996899814443544658999999998876301012444444320387888878999999998610478689
Q gi|254780442|r 299 TAVF-EEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAI 375 (480)
Q Consensus 299 nav~-dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aI 375 (480)
..+. -|+|.|.|+. |.=.-.|.++-+.++.+....-... + ...-.++. -+|.|-...|...+|+.+
T Consensus 162 ~~~~~~Ga~~I~laD-T~G~a~P~~v~~~i~~v~~~~~~~~-i-------~~H~Hnd~--Gma~AN~laAv~aGa~~v 228 (287)
T PRK05692 162 ERLFALGCDEISLGD-TIGVGTPGQVRRVLEAVLAEFPAER-L-------AGHFHDTY--GQALANIYASLEEGITVF 228 (287)
T ss_pred HHHHHCCCCEEECCC-CCCCCCHHHHHHHHHHHHHHCCCCC-E-------EEEECCCC--CHHHHHHHHHHHHCCCEE
T ss_conf 999857997854476-5566699999999999998668872-3-------56744873--069999999998099989
No 315
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II; InterPro: IPR010074 Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=35.77 E-value=4.9 Score=19.96 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHHHCCCEEE---EE--HHHHH---HHHHCCCCCHHHHH---HHHHHHH-----CCCCEEEECCCCC-CCCCHHH
Q ss_conf 999999851398399---80--57678---88828898403477---8999985-----1996899814443-5446589
Q gi|254780442|r 260 KKLIRIARQLGKPVV---IA--TQMLE---SMVTSPFPTRAEVS---DVATAVF-----EEADAIMLSAETA-SGSYPVD 322 (480)
Q Consensus 260 k~ii~~~~~~~kpvi---vA--Tq~le---SM~~~p~PTRaEv~---Dvanav~-----dG~D~imLs~ETa-~G~yP~~ 322 (480)
|=|=..|+.++-||+ |. =|-=+ .=--+|+||-.=|. ||-.... .-=|.|.|-|||. -.-=-.+
T Consensus 528 ~Gl~daa~~l~~PVVgGNVSLYNE~~~~~~~~~i~PTP~i~~VG~~~Dv~~~~~~~~~~~~Gd~~~l~Get~~~ElGGS~ 607 (763)
T TIGR01736 528 KGLGDAARALGTPVVGGNVSLYNETNGEDAKVPIAPTPTIGMVGLVEDVEKLLTSLNFKKEGDAIYLIGETKKDELGGSE 607 (763)
T ss_pred HHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCHHH
T ss_conf 99999998638898821100023103787243537851589998842742125642054479769993143236664767
Q ss_pred HHHHHHHH-HHHHHCCHHHHHHH-------H-HH--CCCCCCCHH-HHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHH
Q ss_conf 99999998-87630101244444-------4-32--038788887-8999999998610--4786899970883799999
Q gi|254780442|r 323 AVRTMSLV-ASSAERDSSWLEMR-------S-LR--RIEPNETGA-DVISSAARQIAET--LRLSAIFCYTASGATGLRA 388 (480)
Q Consensus 323 ~v~~~~~i-~~~~E~~~~~~~~~-------~-~~--~~~~~~~~~-~aIa~aav~lA~~--l~a~aIiv~T~sG~tA~~i 388 (480)
-.+.++.+ +=.+.+ .++...+ . .+ ....-++.+ ==||.|..+|+.. ++|+ |-.-.....|.|..
T Consensus 608 Y~~~~~g~~~G~~P~-vDl~~e~~~~d~v~~~i~~g~v~~ahDvS~GGLAvaLAem~~~~G~Ga~-~~~~~~~~~~~r~~ 685 (763)
T TIGR01736 608 YLKVVHGIVSGQVPA-VDLEEEKELADAVREAIREGLVSAAHDVSRGGLAVALAEMAIASGIGAE-VDIDEIASETARAD 685 (763)
T ss_pred HHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCEE-EEECCCCCCHHHHH
T ss_conf 877778844786888-7868889999999999740682055443352389999999974486259-97257885000026
Q ss_pred HHHCCCCC---EEEEECCHHHHHHH
Q ss_conf 84188886---99992998999876
Q gi|254780442|r 389 ARERPKLE---IIALSPMIQTARRL 410 (480)
Q Consensus 389 S~~RP~~p---IiaiT~~~~t~r~l 410 (480)
..+-..++ |+++....++...+
T Consensus 686 ~~LFSEs~gR~iv~~~~~~~v~~~~ 710 (763)
T TIGR01736 686 ELLFSESNGRAIVAVREEKAVEEAV 710 (763)
T ss_pred HHHCCCCCCCEEEEECCHHHHHHHH
T ss_conf 8870677886699957979999999
No 316
>LOAD_sis consensus
Probab=35.74 E-value=28 Score=14.38 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=21.4
Q ss_pred CCEEEEECCCHHHHHHHHHHCC----CCCEEEEECCH
Q ss_conf 8689997088379999984188----88699992998
Q gi|254780442|r 372 LSAIFCYTASGATGLRAARERP----KLEIIALSPMI 404 (480)
Q Consensus 372 a~aIiv~T~sG~tA~~iS~~RP----~~pIiaiT~~~ 404 (480)
-+.+++++.||.|.-.+...|. .++++++|...
T Consensus 51 ~~~~i~iS~SG~t~e~~~a~~~~~~~~~~~i~it~~~ 87 (90)
T LOAD_sis 51 DDLLVIISKSGGTTETLLAALLAKKRGAKTIAITNVA 87 (90)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8889998789888999999999998899399996888
No 317
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=35.71 E-value=28 Score=14.37 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=63.4
Q ss_pred EEEEECC---CCEEEC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC----CCCCCCHHHHHHHHHHHCCC
Q ss_conf 2455138---808711--45644678544555676556778998873488532505----85577347999998620034
Q gi|254780442|r 143 IKCKVIA---GISIAD--RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVAL----SFIQSADDLLEIRKIISQNK 213 (480)
Q Consensus 143 i~c~V~~---gG~l~s--~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ial----SfVr~~~di~~~r~~l~~~~ 213 (480)
+.|-|.. .|.+.+ +.|-|+-|..-..|. ++-++.++-- .. ++.-+++ +..++..-++.+|+...+.+
T Consensus 85 VF~~V~dPv~aglv~s~~~pg~NvTGvs~~~~~--~~~l~l~~~l-~P-~~k~igvlyn~~e~ns~~~~~~~~~~a~~~G 160 (281)
T cd06325 85 VFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPV--ETQLELLKKL-LP-DAKTVGVLYNPSEANSVVQVKELKKAAAKLG 160 (281)
T ss_pred EEEECCCHHHCCCCCCCCCCCCCEEEEECCCCH--HHHHHHHHHH-CC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999516866627543567899957998787478--9999999985-88-9858999957998656999999999999769
Q ss_pred CEEEE-EECCHHHHH-HHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 33555-327856631-17888753312475222200215876736899999999851398399805
Q gi|254780442|r 214 IGLMS-KIEKPRAIE-YASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 214 ~~Iia-KIE~~~al~-nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
+.++. .+.+..-+. -++++....|++++---. -+...-..|...|++++.|+|.+.
T Consensus 161 i~v~~~~v~~~~ei~~a~~~l~~~~Dal~~~~d~--------~v~s~~~~i~~~a~~~~iPv~~~~ 218 (281)
T cd06325 161 IEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDN--------TVASAMEAVVKVANEAKIPVIASD 218 (281)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 8899994598889999999756258999991881--------277799999999987499889367
No 318
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=35.57 E-value=28 Score=14.36 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHH
Q ss_conf 789988734885325058557734799999862003433555-3278566311788875331247522220021587673
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELI 255 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~v 255 (480)
...+.+. +.++|-+-.|.- ..+++..+|+.+++. ..+++ =|- +++-.--+-|-..+|.++|.|+=-..+=|.+..
T Consensus 130 ~~~~~a~-~~g~~Gvv~~~~-~~~~~~~ir~~~~~~-~~ivtPGI~-~~~~~~~~ai~~Gad~iVVGR~It~A~dP~~aa 205 (215)
T PRK13813 130 KLAKLAN-EAGAFGVVAPAT-RPERVRAIRRRLGDD-LKIISPGIG-AQGGKASDAIKAGADYVIVGRSIYNAADPREAA 205 (215)
T ss_pred HHHHHHH-HCCCCEEEECCC-CHHHHHHHHHHCCCC-CEEECCCCC-CCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHH
T ss_conf 9999999-869998997898-879999999862887-469857616-799998999981899999894335899999999
Q ss_pred HHHHHHH
Q ss_conf 6899999
Q gi|254780442|r 256 PGIQKKL 262 (480)
Q Consensus 256 p~~Qk~i 262 (480)
=.+++.|
T Consensus 206 ~~i~~~i 212 (215)
T PRK13813 206 KKIREEI 212 (215)
T ss_pred HHHHHHH
T ss_conf 9999986
No 319
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769 Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm.
Probab=35.56 E-value=28 Score=14.36 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=28.3
Q ss_pred HCCCCE---EEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 739978---99988888989999999999999997499279999878
Q gi|254780442|r 28 EEGTDV---FRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQ 71 (480)
Q Consensus 28 ~aG~nv---~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~ 71 (480)
+.|=|| .+||=..||-++..++|...++ +.|.||||+-
T Consensus 56 DNGYDvSDY~~IdP~FGTM~Dfe~Lv~eAk~------r~i~imLDmV 96 (555)
T TIGR02403 56 DNGYDVSDYYAIDPLFGTMADFEELVSEAKK------RNIKIMLDMV 96 (555)
T ss_pred CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH------CCCEEEEEEE
T ss_conf 7776311014248798888999999999977------7988999776
No 320
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=35.50 E-value=28 Score=14.35 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=28.8
Q ss_pred CCEEEEECCHHHHHHHHHHCCCEEEE-----E--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86999929989998766653937999-----3--6879999999999999998888
Q gi|254780442|r 395 LEIIALSPMIQTARRLALVWGIHCVV-----T--EDASDSDDMVNRACRIVVEQGF 443 (480)
Q Consensus 395 ~pIiaiT~~~~t~r~l~L~~GV~p~~-----~--~~~~~~~~~i~~a~~~l~~~g~ 443 (480)
-.+..+-.+....|.+.-.-...-.. . |..-+.+.....|++.+.++++
T Consensus 245 gkL~GIiTDGDLRR~l~~~~~i~~~~~~diMT~nP~tI~~d~la~eAL~iMe~~kI 300 (326)
T PRK10892 245 MMIEGIFTDGDLRRVFDMGVDLRQLSIADVMTPGGIRVRPGILAVDALNLMQSRHI 300 (326)
T ss_pred CCEEEEEECHHHHHHHHHCCCCCCCCHHHHHCCCCCEECCCCCHHHHHHHHHHCCC
T ss_conf 96899986268999987068831287999718999678998869999999986398
No 321
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=35.38 E-value=24 Score=14.87 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=39.9
Q ss_pred CCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCC
Q ss_conf 89818965899999953245564442212664422211336526740684221023445411245513880871145644
Q gi|254780442|r 81 ANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGIS 160 (480)
Q Consensus 81 ~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn 160 (480)
.+....+++||.|..-..+..|..-. +.+.+...+++++..=.+.-+-..-. -.-..||.+.-..++|
T Consensus 6 k~~K~kIkkGD~V~VisGkdKGk~G~-------Vl~v~~~~~~viVeGvN~~kKH~Kp~-----~~~~~GgIi~~EaPIh 73 (90)
T CHL00141 6 KNKKMHVKKGDTVQVISGKDKGKIGE-------VLKIIRKSNKVIVKGINIKTKHIKPQ-----KEGEVGEIKQFEAPIH 73 (90)
T ss_pred CCCCEEEECCCEEEEEECCCCCCCEE-------EEEEECCCCEEEEECCEEEEEECCCC-----CCCCCCCEEEEECCEE
T ss_conf 67140670899999916678997357-------99998679999997958888715898-----8999888989873832
Q ss_pred CCCCCCCCC
Q ss_conf 678544555
Q gi|254780442|r 161 FPDTFLTTQ 169 (480)
Q Consensus 161 ip~~~i~l~ 169 (480)
+.+.-+--|
T Consensus 74 iSNV~l~dp 82 (90)
T CHL00141 74 SSNVMLYNE 82 (90)
T ss_pred EEEEEEECC
T ss_conf 234888878
No 322
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=35.25 E-value=28 Score=14.32 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=84.7
Q ss_pred HHHHHH-HHHHHCCCCCEECCCCCCCCHHHH-HHHHHHHCCC-CEEEE---------EECCHHHHHHHHHHHHHHHEEEE
Q ss_conf 567789-988734885325058557734799-9998620034-33555---------32785663117888753312475
Q gi|254780442|r 174 KDREDL-HAALQTCEVDWVALSFIQSADDLL-EIRKIISQNK-IGLMS---------KIEKPRAIEYASEIIQLSDAVMV 241 (480)
Q Consensus 174 kD~~di-~~a~~~~~vD~ialSfVr~~~di~-~~r~~l~~~~-~~Iia---------KIE~~~al~nl~eI~~~sDgimi 241 (480)
+|.+.+ +-|.++ +|.++ +.=.-+.++.. .+.++++... ..|++ +=.+++.++.|.+++...+.=.+
T Consensus 18 ~d~~~v~~ra~~~-~v~~~-v~vg~~l~~~~W~~~~l~~~~~g~~v~~~~G~HP~d~~~~~~~~~~~l~~l~~~~~~~v~ 95 (269)
T TIGR00010 18 VDVEEVIERAKAE-GVTAV-VDVGTDLEDLNWRALELAEKYPGDNVYAAVGVHPLDVEDDTKEDIKELEKLAKNAHPKVV 95 (269)
T ss_pred CCHHHHHHHHHHC-CCEEE-EEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 3589999999974-99299-973467002069999999847997699982268722204208999999999985069547
Q ss_pred ECCCCCHHCCHHHH---HHHHHHH----HHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHC------CCCEE
Q ss_conf 22220021587673---6899999----99985139839980576788882889840347789999851------99689
Q gi|254780442|r 242 ARGDLGVEMALELI---PGIQKKL----IRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE------EADAI 308 (480)
Q Consensus 242 aRGDLg~e~~~e~v---p~~Qk~i----i~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~d------G~D~i 308 (480)
|=|-.|++.=..+= +..|+.+ |+.|.+++||||+=+..=+ .|+.+.+.+ ...+.
T Consensus 96 AiGE~GLDY~~~~~~~e~~~Q~e~F~~q~~lA~~~~~P~iiH~RdA~-------------~d~~~iL~~~y~~~~~~~~g 162 (269)
T TIGR00010 96 AIGETGLDYYKADEKKERRRQKEVFRAQLQLAEELNLPVIIHARDAE-------------EDVLDILREYYAEKAPKVGG 162 (269)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHH-------------HHHHHHHHHHHHCCCCCCCE
T ss_conf 98510440430687521789999999999999971996899788457-------------99999999998427877875
Q ss_pred EE
Q ss_conf 98
Q gi|254780442|r 309 ML 310 (480)
Q Consensus 309 mL 310 (480)
||
T Consensus 163 ~~ 164 (269)
T TIGR00010 163 VL 164 (269)
T ss_pred EE
T ss_conf 79
No 323
>PRK08694 consensus
Probab=35.06 E-value=28 Score=14.30 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 566311788875331247522220---02158767368999999998513983998
Q gi|254780442|r 223 PRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 223 ~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+-|+..||.++. | +.+|+| |..-+.-|--+++..+...|.+.++||.+
T Consensus 202 ~TG~~~LD~~t~---G--l~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~ 252 (468)
T PRK08694 202 PTGFIDLDKKTS---G--LQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAV 252 (468)
T ss_pred CCCHHHHHHHHC---C--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 579688987644---8--88784799961786537899999999999847984799
No 324
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=34.87 E-value=29 Score=14.28 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=34.2
Q ss_pred EEEECCHHH----HHHHHHHCCCEEEEE--CCCCCHHHHHH-HHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 999299899----987666539379993--68799999999-9999999888877887799985
Q gi|254780442|r 398 IALSPMIQT----ARRLALVWGIHCVVT--EDASDSDDMVN-RACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 398 iaiT~~~~t----~r~l~L~~GV~p~~~--~~~~~~~~~i~-~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
..+|+.... .-.|.+.+||.--.. .+..+.++.+. ..++.+.+.|+++.+|.+-+|-
T Consensus 312 ~~Ls~~d~~~e~ii~gLR~~~Gid~~~~~~~fg~~~~~~~~~~~l~~l~~~gLi~~d~~i~LT~ 375 (390)
T PRK06582 312 TKLTHQEIIEEILMMGLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIRLDENIYLTD 375 (390)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCHHHHHHHHHCCCEEECCEEEECH
T ss_conf 5189889999999998998689089999999893999971989999999797989899899996
No 325
>PRK08185 hypothetical protein; Provisional
Probab=34.72 E-value=29 Score=14.26 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=71.6
Q ss_pred CHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 22211336-5267406842210--------234-4541124551388087114564467854455567655677899887
Q gi|254780442|r 114 IFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAAL 183 (480)
Q Consensus 114 l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~~~i~l~~ltekD~~di~~a~ 183 (480)
+.+.++.| +.|.+|-....|+ +.+ .+.-.+..+.+-|.. + ..+-...+.. +-..+|+-+ +..+|.
T Consensus 84 ~~~ai~~GFsSVM~DgS~lp~eeNi~~Tk~vv~~ah~~gv~VEaElG~v-g-~~e~~~~~~~-~~~~~T~pe-ea~~Fv- 158 (283)
T PRK08185 84 VMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTI-G-NTGTSVEGGV-SQIIYTDPE-QAEDFV- 158 (283)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC-C-CCCCCCCCCC-CCCCCCCHH-HHHHHH-
T ss_conf 9999982998798638989999999999999999986598389986236-7-7687766664-200048999-999999-
Q ss_pred HCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHH
Q ss_conf 348853250585577347999998620034335553-2785663117888753312475222200215876736899999
Q gi|254780442|r 184 QTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSK-IEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKL 262 (480)
Q Consensus 184 ~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaK-IE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~i 262 (480)
+.-++|.+|.||=...-. +.+ -+-..-++-|++|-+..+-=+|=-|-=| +|.| -
T Consensus 159 ~~TgvD~LAvaiGn~HG~---------------Yk~~~~p~l~~~~l~~I~~~~~vPLVLHGgSG--~~~e--------~ 213 (283)
T PRK08185 159 SRTGVDTLAVAIGTAHGI---------------YPKDKKPKLQMDILKEINERVDIPLVLHGGSA--NPDA--------E 213 (283)
T ss_pred HHHCCCEEEEECCCCCCC---------------CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC--CCHH--------H
T ss_conf 987999786332554555---------------57889842378999999986499989758999--9999--------9
Q ss_pred HHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 99985139-83998057678888
Q gi|254780442|r 263 IRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 263 i~~~~~~~-kpvivATq~leSM~ 284 (480)
+++|.+.| ..+=+.|++...+.
T Consensus 214 i~~ai~~Gv~KiNi~T~l~~a~~ 236 (283)
T PRK08185 214 IAESVTLGVGKINISSDMKYAFF 236 (283)
T ss_pred HHHHHHCCEEEEEECHHHHHHHH
T ss_conf 99999869379984867999999
No 326
>PRK06801 hypothetical protein; Provisional
Probab=34.58 E-value=29 Score=14.25 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCC-E-----EEC--C
Q ss_conf 7999999999739978999888889899999999999999974992799998789867886548981-8-----965--8
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSK-V-----DLT--E 89 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~-i-----~l~--~ 89 (480)
.-.+.|..--+.|--|.-||+. +.|+.+.++ +++++.+.|+ |+.=.+|. ++ +.+.+ + .+. .
T Consensus 5 ~~k~lL~~A~~~~yAV~AfNv~--n~e~~~avi----~AAee~~sPv-Ilq~s~~~-~~---~~~~~~~~~~~~~~a~~~ 73 (286)
T PRK06801 5 SLANGLAHARKHGYALGAFNVL--DSHFLRALF----AAAKQERSPF-IINIAEVH-FK---YISLESLVEAVKFEAAHH 73 (286)
T ss_pred CHHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCHHH-HH---HCCHHHHHHHHHHHHHHC
T ss_conf 6899999999889479998889--999999999----9999978798-99806757-75---669999999999999877
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCC
Q ss_conf 99999953245564442212664422211336-5267406842210--------234-4541124551388087114564
Q gi|254780442|r 90 GQIFTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGI 159 (480)
Q Consensus 90 G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgv 159 (480)
.--|-+..|.. -++..+.+.++.| +.|.+|...+.|+ |.+ .+.-.+..+.+-|..-+..-|.
T Consensus 74 ~VPV~lHLDHg--------~~~e~i~~ai~~Gf~SVM~DgS~l~~eeNi~~Tk~vve~ah~~gv~VEaElG~vgg~ed~~ 145 (286)
T PRK06801 74 DIPVVLNLDHG--------LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGA 145 (286)
T ss_pred CCCEEEECCCC--------CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
T ss_conf 99899989999--------9999999999829987997499899999999999999999884985999963105766776
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEE
Q ss_conf 46785445556765567789988734885325058557734799999862003433555327856631178887533124
Q gi|254780442|r 160 SFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239 (480)
Q Consensus 160 nip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgi 239 (480)
+.+. .+...+|+-+ +..+|. +.-++|++|+||=...-. + |=+-+.-++-|++|-+..+--
T Consensus 146 -~~~~-~~~~~~T~pe-ea~~Fv-~~TgvD~LAvaiGn~HG~---------------y-k~~p~L~~~~L~~I~~~~~vP 205 (286)
T PRK06801 146 -LYGE-ADSNLFTDPA-IARDFV-DRTGIDALAVAIGNAHGK---------------Y-KGEPKLDFARLAAIHQQTGLP 205 (286)
T ss_pred -CCCC-CCCCCCCCHH-HHHHHH-HHHCCCEEEEECCCCCCC---------------C-CCCCCCCHHHHHHHHHHCCCC
T ss_conf -5576-5300268999-999999-986998997522545567---------------6-898867999999999852999
Q ss_pred EEECCCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 7522220021587673689999999985139-83998057678888
Q gi|254780442|r 240 MVARGDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 240 miaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
+|=-|-= -+|.|+ |++|.+.| ..+=+.|.+-..+.
T Consensus 206 LVLHGgS--Gi~~e~--------i~~ai~~Gv~KiNi~T~l~~a~~ 241 (286)
T PRK06801 206 LVLHGGS--GISDTD--------FRRAISLGIHKINFYTGMSQAAL 241 (286)
T ss_pred EEEECCC--CCCHHH--------HHHHHHCCCEEEEECHHHHHHHH
T ss_conf 8977999--999999--------99999779769982868999999
No 327
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=34.58 E-value=29 Score=14.25 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=16.0
Q ss_pred HHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHH
Q ss_conf 5331247522220021587673689999999985
Q gi|254780442|r 234 QLSDAVMVARGDLGVEMALELIPGIQKKLIRIAR 267 (480)
Q Consensus 234 ~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~ 267 (480)
.+-+..| |.|+|+|. +|....+|+..+.
T Consensus 159 ~A~~~g~----dvG~EiPa--ipg~e~~i~e~~~ 186 (353)
T COG2108 159 IAKKYGM----DVGVEIPA--IPGEEEAILEFAK 186 (353)
T ss_pred HHHHHCC----CCEEECCC--CCCHHHHHHHHHH
T ss_conf 9998285----51043278--8656889999999
No 328
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=34.18 E-value=29 Score=14.20 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCCCEEEEEEC-CCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHH-HCCCCCEEEE
Q ss_conf 78986788654-898189658999999532455644422126644222-1133652674
Q gi|254780442|r 70 LQGPKFRVGKF-ANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFA-SIKIGDRLLI 126 (480)
Q Consensus 70 l~GpkiR~g~~-~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~-~ik~Gd~I~i 126 (480)
..|.++|+|-+ ..+.+.-..|..+.|...+ ..+.+.+.|.+++. ..+.|.-+.+
T Consensus 48 ~~~~~iRvgG~V~~gSi~~~~~~~~~F~itD---~~~~i~V~Y~G~lPdlF~Eg~gVVv 103 (130)
T pfam03100 48 PPGRRIRLGGLVEEGSVVRDDGLTVRFVVTD---GAASVPVRYTGILPDLFREGQGVVA 103 (130)
T ss_pred CCCCEEEEEEEEECCCEEECCCCEEEEEEEC---CCCEEEEEEECCCCHHHHCCCCEEE
T ss_conf 6686899988996086796799779999984---8946999994779656627980899
No 329
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=34.16 E-value=29 Score=14.20 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEC----CCCCCCCHHHHHHHHHHHCCCCEEEE-EECCHHHHHH-H
Q ss_conf 4564467854455567655677899887348853250----58557734799999862003433555-3278566311-7
Q gi|254780442|r 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVA----LSFIQSADDLLEIRKIISQNKIGLMS-KIEKPRAIEY-A 229 (480)
Q Consensus 156 ~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ia----lSfVr~~~di~~~r~~l~~~~~~Iia-KIE~~~al~n-l 229 (480)
+.|=|+-|..-.. ..++=.+.++-.. . ++.-++ -+...+..-++.+++...+.++.++. .+++...+.. +
T Consensus 102 ~pg~NvTGvs~~~--~~~~~l~ll~~l~-P-~~k~igviyn~~e~~s~~~~~~~~~~a~~~gi~l~~~~v~~~~ei~~a~ 177 (292)
T pfam04392 102 QPGENVTGVSDLV--DVEQTIELIKKLL-P-NVKSIGVYYSPSEANSVSLVEEIKKYAKKSGIKVVEASVPSSNDVPSAM 177 (292)
T ss_pred CCCCEEEEEECCC--CHHHHHHHHHHHC-C-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf 8998267852774--7999999999868-8-9858999957998657999999999999769989999668866799999
Q ss_pred HHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 888753312475222200215876736899999999851398399805
Q gi|254780442|r 230 SEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 230 ~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
..+....|++++-...+ +...-..|+..|++++.|+|.+.
T Consensus 178 ~~l~~~~Dal~i~~d~~--------v~s~~~~i~~~a~~~kiPv~~~~ 217 (292)
T pfam04392 178 SSMAGKVDAIFIPTDNL--------IASAFTAVLQEANKAKIPVITSD 217 (292)
T ss_pred HHHHCCCCEEEEECCCC--------HHHHHHHHHHHHHHCCCCEEECC
T ss_conf 97432898899937810--------78899999999997499989577
No 330
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=34.02 E-value=16 Score=16.19 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 75331247522220021587673689999999985139839980576788882889840347789999851996899814
Q gi|254780442|r 233 IQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSA 312 (480)
Q Consensus 233 ~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ 312 (480)
++.+.||+=+||-.--+ .- =-+|.+|||++|-+.--. -+--| .|+ --.||+.|..+-|
T Consensus 396 M~~A~gIvT~rGG~TSH---AA---------IVAReLG~PcVVG~~~~~-------~~~~~-G~~--ITvDG~~G~Vy~G 453 (529)
T PRK05878 396 MLAAQGIVTEVGGAASH---AA---------VVSRELGRVAVVGCGAGV-------AAALA-GKV--ITVDGYEGEVREG 453 (529)
T ss_pred HHHHCEEEECCCCHHHH---HH---------HHHHHCCCCEEECCCCCC-------EEECC-CCE--EEECCCCCEEECC
T ss_conf 88705668778873479---99---------998325998796668884-------56438-988--9980898759704
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 4435446589-9999999887630101244444432038788887899999999861047868999708
Q gi|254780442|r 313 ETASGSYPVD-AVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380 (480)
Q Consensus 313 ETa~G~yP~~-~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~ 380 (480)
|-..=. |.. --..+..+..-++......-. ...+.+ .+++=...+++.|-..+|..||.-|+
T Consensus 454 ~~~~~~-~~~~~~~~~~~~~~wad~~~~~~vr---anadtp--~~~a~~~~~~~~a~~~g~~~i~~~~~ 516 (529)
T PRK05878 454 ELALSA-WSEDDTPELRELADIARRISPLRAH---ASGDYP--RLDADSDPAVRAALAAGHADVVSRTP 516 (529)
T ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHCCCEEE---ECCCCC--CCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 115778-7731057899999999962833457---558898--87889859999999757666356872
No 331
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.96 E-value=30 Score=14.18 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCC
Q ss_conf 4422211336526740684221023445411245513880871145
Q gi|254780442|r 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRK 157 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~K 157 (480)
.++...+++||+|....|.+- +|.++.++.+..++-.|-.++=-|
T Consensus 33 ~~m~~sL~~Gd~VvT~~Gl~G-tV~~v~dd~v~lEiApGv~v~~~k 77 (108)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQA-TIVGITDDTVDLEIAPGVVTTWMK 77 (108)
T ss_pred HHHHHHCCCCCEEEECCCCEE-EEEEECCCEEEEEECCCCEEEEEH
T ss_conf 999983689998997898289-999971887999976995899983
No 332
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=33.92 E-value=30 Score=14.17 Aligned_cols=219 Identities=14% Similarity=0.122 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEE----CC--CC
Q ss_conf 7999999999739978999888889899999999999999974992799998789867886548981896----58--99
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDL----TE--GQ 91 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l----~~--G~ 91 (480)
.-.+.|..-.+.|--|--+|+. +.|+.+.++ +++++.+.|+ |+.=.+|.--..+.+.. .+.+ .+ .-
T Consensus 5 slk~lL~~A~~~~yAV~afNv~--n~e~~~avi----~AAee~~sPv-Ilq~s~~~~~~~~g~~~-~~~~~~~~~~~~~a 76 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQYNIN--NLEFTQAIL----EASQEENAPV-ILGVSEGAARYMSGFYT-IVKMVEGLMHDLNI 76 (286)
T ss_pred CHHHHHHHHHHCCEEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEEECCCHHHHCCCHHH-HHHHHHHHHHHHCC
T ss_conf 6899999999889179987669--899999999----9999968799-99917668876576889-99999999998379
Q ss_pred --EEEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCC
Q ss_conf --999953245564442212664422211336-5267406842210--------234-4541124551388087114564
Q gi|254780442|r 92 --IFTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGI 159 (480)
Q Consensus 92 --~v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgv 159 (480)
-|.+..|.. -++..+.+.++.| +.|.+|-....|+ |.+ .+.-.+..+.+-|-.-+..-++
T Consensus 77 ~VPV~lHLDH~--------~~~e~~~~ai~~GFtSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~ 148 (286)
T PRK08610 77 TIPVAIHLDHG--------SSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDV 148 (286)
T ss_pred CCCEEEECCCC--------CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
T ss_conf 98889989899--------9999999999719998998199898999999999999999870882699752136756776
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEE
Q ss_conf 46785445556765567789988734885325058557734799999862003433555327856631178887533124
Q gi|254780442|r 160 SFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239 (480)
Q Consensus 160 nip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgi 239 (480)
.-.+. ..|+- .+..+|. +.-++|++|+||=...-. + |=+-..-++-|++|-+..|-=
T Consensus 149 ~~~~~-----~~T~p-eea~~Fv-~~TgvD~LAvaiGt~HG~---------------y-k~~p~l~~~~L~~I~~~~~vP 205 (286)
T PRK08610 149 VADGI-----IYADP-KECQELV-EKTGIDALAPALGSVHGP---------------Y-KGEPKLGFKEMEEIGLSTGLP 205 (286)
T ss_pred CCCCC-----CCCCH-HHHHHHH-HHHCCCEEEEECCCCCCC---------------C-CCCCCCCHHHHHHHHHHCCCC
T ss_conf 67543-----03799-9999999-973986673111554465---------------5-899877899999998524999
Q ss_pred EEECCCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHH
Q ss_conf 7522220021587673689999999985139-839980576788882
Q gi|254780442|r 240 MVARGDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMVT 285 (480)
Q Consensus 240 miaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~~ 285 (480)
+|=-|-=| +|.|+ |++|.+.| ..+=+.|++-..+..
T Consensus 206 LVLHGgSG--i~~e~--------i~~ai~~Gi~KvNi~T~l~~a~~~ 242 (286)
T PRK08610 206 LVLHGGTG--IPTKD--------IQKAIPFGTAKINVNTENQIASAK 242 (286)
T ss_pred EEEECCCC--CCHHH--------HHHHHHCCCEEEEECCHHHHHHHH
T ss_conf 79658999--99999--------999998598489967188999999
No 333
>PRK01712 carbon storage regulator; Provisional
Probab=33.88 E-value=30 Score=14.17 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=19.1
Q ss_pred CCCCCEEEEECCCEEECCCCCCCCEEE
Q ss_conf 133652674068422102344541124
Q gi|254780442|r 118 IKIGDRLLIDDGRVKLCVQEKGIGFIK 144 (480)
Q Consensus 118 ik~Gd~I~idDG~i~l~V~~~~~~~i~ 144 (480)
=|+|..|.|+| .|..+|+++.++.++
T Consensus 6 Rk~gEsI~Ig~-~I~i~Vl~i~g~~Vr 31 (64)
T PRK01712 6 RRVGESLMIGD-DIEVTVLGVKGNQVR 31 (64)
T ss_pred EECCCEEEECC-CEEEEEEEECCCEEE
T ss_conf 20899799699-979999998299899
No 334
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=33.86 E-value=25 Score=14.71 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=30.4
Q ss_pred CEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCC
Q ss_conf 18965899999953245564442212664422211336526740684221023445411245513880871145644678
Q gi|254780442|r 84 KVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPD 163 (480)
Q Consensus 84 ~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~ 163 (480)
+..+++||.|..-..+..|..-.+ .+.+...+++++..=.+.-+-..-. -.-.+||.+..-.++|+.+
T Consensus 4 K~kIkkGD~V~VisGkdKGk~G~V-------l~v~~~~~rviVeGvN~~kkh~Kp~-----~~~~~Ggii~~E~pIh~SN 71 (77)
T PRK12281 4 KLHVKKGDMVKVIAGDDKGKTGKV-------LAVLPKKNRVIVEGVNIRKKAIKPS-----QKNPNGGFIEKEMPIHISN 71 (77)
T ss_pred EEEEECCCEEEEEECCCCCCCEEE-------EEEECCCCEEEEECCEEEEEECCCC-----CCCCCCCEEEEECCEEHHH
T ss_conf 048758999999466789972789-------9998779999994863798734998-----8899988999884782440
Q ss_pred CC
Q ss_conf 54
Q gi|254780442|r 164 TF 165 (480)
Q Consensus 164 ~~ 165 (480)
.-
T Consensus 72 V~ 73 (77)
T PRK12281 72 VK 73 (77)
T ss_pred CE
T ss_conf 61
No 335
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=28 Score=14.40 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCEEE-EECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEE
Q ss_conf 52699-941877579999999997399789998888898999999999999999749927999987898678865
Q gi|254780442|r 6 RIKII-STLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGK 79 (480)
Q Consensus 6 ktKIi-~TlGPas~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~ 79 (480)
+||+| .|-+|- .++.|..|.+. ..+|+|- |-++.+-..... +-|....|.++.++=|-- +|.++.
T Consensus 79 ~tkLVQVTg~~g--~~~sL~~lArr--~G~~~~~-~~~P~eeA~~~A--~LA~~GvG~ev~~fEdeT--~I~VsR 144 (652)
T COG2433 79 GTKLVQVTGRPG--EQESLWELARR--HGIRVNG-KLNPYEEAYACA--RLASKGVGTEVSVFEDET--KITVSR 144 (652)
T ss_pred CCEEEEEECCCC--CCCHHHHHHHH--HCCCCCC-CCCHHHHHHHHH--HHHHCCCCCEEEEEEEEE--EEEEEE
T ss_conf 860899838988--72328999998--4987799-888588999999--998658986357630036--999974
No 336
>PRK05764 aspartate aminotransferase; Provisional
Probab=33.23 E-value=30 Score=14.10 Aligned_cols=105 Identities=16% Similarity=0.287 Sum_probs=44.9
Q ss_pred EEECCCCC--CCHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CEEEEE--E-C
Q ss_conf 99418775--7999999999739978999888---889899999999999999974992799998789-867886--5-4
Q gi|254780442|r 10 ISTLGPSS--FSEDVINRLHEEGTDVFRINMS---HTSHDKMCELIKKIRAVELRSRRPIGILIDLQG-PKFRVG--K-F 80 (480)
Q Consensus 10 i~TlGPas--~~~e~i~~l~~aG~nv~RiN~S---Hg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~G-pkiR~g--~-~ 80 (480)
+..|.|+- .-.+..+++-..|-++..+... +.+++...+ -+.++..+ +. .=..+.+| |++|-. . +
T Consensus 8 ~~~~~~s~~~~~~~~a~~~~~~G~dvi~l~~g~pd~~~p~~i~~---a~~~~~~~-~~--~~Y~~~~G~~~LR~aia~~~ 81 (389)
T PRK05764 8 VARVKPSATLAVTAKAKELKAAGRDVISLGAGEPDFDTPEHIKE---AAIAALDE-GK--TKYTPAAGIPELREAIAEKL 81 (389)
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHH---HHHHHHHC-CC--CCCCCCCCCHHHHHHHHHHH
T ss_conf 85189469999999999999779982788897899998899999---99999847-99--99989988799999999999
Q ss_pred CC-CCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEC
Q ss_conf 89-8189658999999532455644422126644222113365267406
Q gi|254780442|r 81 AN-SKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDD 128 (480)
Q Consensus 81 ~~-~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idD 128 (480)
.. ..+.+.. +.|.+|. |..+.+.+- +..-+++||.|++-+
T Consensus 82 ~~~~g~~v~~-d~I~it~----G~~~al~~~---~~~l~~pGD~Vlv~~ 122 (389)
T PRK05764 82 KRDNGLDYEP-DQIIVTT----GAKQALYNA---FMALLNPGDEVIIPA 122 (389)
T ss_pred HHHHCCCCCH-HHEEECC----CHHHHHHHH---HHHHCCCCCEEEECC
T ss_conf 9986899857-9789888----879999999---999589999899857
No 337
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=33.15 E-value=29 Score=14.21 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 677899887348853250585577347999998620034335553278566311788
Q gi|254780442|r 175 DREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASE 231 (480)
Q Consensus 175 D~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~e 231 (480)
..+-+..+ +.+ ++==-..|.+. --..+|+.|....-.==-+-.|...++|+=|
T Consensus 180 ~eeL~~Ia-~~m-~~~ReY~Lt~~--A~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE 232 (261)
T TIGR02881 180 VEELMEIA-ERM-VKEREYKLTEE--AKWKLREHLAKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred HHHHHHHH-HHH-HHHHHHCCCHH--HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 88999999-999-86464225788--9999999974124442100576201242889
No 338
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=33.07 E-value=30 Score=14.08 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEECCC-------------CCC--CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 56765567789988734885325058-------------557--734799999862003433555327856631178887
Q gi|254780442|r 169 QALTQKDREDLHAALQTCEVDWVALS-------------FIQ--SADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 169 ~~ltekD~~di~~a~~~~~vD~ialS-------------fVr--~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~ 233 (480)
..+|..++..|--++...+||+|=+. |.. ..+.++.+++.+... ++-+-+ ..++-+.+++-
T Consensus 20 ~~fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~a--ki~~l~--~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQA--KLATLL--LPGIGTIEDLK 95 (337)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--EEEEEE--CCCCCCHHHHH
T ss_conf 98899999999999998098999944788877753346787798399999999974328--378996--35655588899
Q ss_pred HHH----HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEE
Q ss_conf 533----124752222002158767368999999998513983998057678888288984034778999985-199689
Q gi|254780442|r 234 QLS----DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVF-EEADAI 308 (480)
Q Consensus 234 ~~s----DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~-dG~D~i 308 (480)
.+. |.+-|+- ++. +.- +-++.|..++++|..|.. .-|+.+| -+..+..+.+.... -|+|+|
T Consensus 96 ~A~~~gv~~vria~-----~~t--ead-~~~~~i~~ar~~G~~v~~-~lm~s~~-----~~~e~l~~~a~~~~~~Gad~I 161 (337)
T PRK08195 96 MAYDAGVRVVRVAT-----HCT--EAD-VSEQHIGLARELGMDTVG-FLMMSHM-----ASPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred HHHHCCCCEEEEEE-----ECC--HHH-HHHHHHHHHHHCCCEEEE-EEHHCCC-----CCHHHHHHHHHHHHHCCCCEE
T ss_conf 99957989799986-----314--887-799999999977993999-7511024-----899999999999986599999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9814443544658999999998876
Q gi|254780442|r 309 MLSAETASGSYPVDAVRTMSLVASS 333 (480)
Q Consensus 309 mLs~ETa~G~yP~~~v~~~~~i~~~ 333 (480)
.|. .|+=.-+|.++-+....+...
T Consensus 162 ~l~-DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 162 YVV-DSAGALLPDDVRARVRALRAA 185 (337)
T ss_pred EEC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 978-987667999999999999986
No 339
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=33.06 E-value=30 Score=14.08 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 868999708837999998418888699992998999876665393799936--879999999999999998888778877
Q gi|254780442|r 372 LSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTE--DASDSDDMVNRACRIVVEQGFGKPGDR 449 (480)
Q Consensus 372 a~aIiv~T~sG~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~--~~~~~~~~i~~a~~~l~~~g~i~~GD~ 449 (480)
...+|+.|.||.++ | +.+..+.++|.|-..|.-+.+- .....-..++.|.+++.. +++..
T Consensus 124 Ithlv~vt~TG~~~-------P-------g~d~~l~~~LGL~~~v~R~~i~~~GC~gg~~gL~~A~~~~~~----~p~~~ 185 (228)
T pfam00195 124 ITHLVFCTTSGVDM-------P-------GADYQLTKLLGLRPSVKRVMLYQQGCFAGGTVLRLAKDLAEN----NKGAR 185 (228)
T ss_pred CCEEEEECCCCCCC-------C-------CHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHH----CCCCE
T ss_conf 99999994799988-------7-------478999998298987211141145416489999999999982----99987
Q ss_pred EEEEE
Q ss_conf 99985
Q gi|254780442|r 450 IIISA 454 (480)
Q Consensus 450 VVvv~ 454 (480)
|+++.
T Consensus 186 VLvv~ 190 (228)
T pfam00195 186 VLVVC 190 (228)
T ss_pred EEEEE
T ss_conf 99998
No 340
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.75 E-value=31 Score=14.04 Aligned_cols=26 Identities=15% Similarity=-0.082 Sum_probs=17.7
Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHH
Q ss_conf 99841888869999299899987666
Q gi|254780442|r 387 RAARERPKLEIIALSPMIQTARRLAL 412 (480)
Q Consensus 387 ~iS~~RP~~pIiaiT~~~~t~r~l~L 412 (480)
.|....-.+|.++++-++++...+.-
T Consensus 262 ~I~A~~~gvP~i~isY~~Kv~~f~~~ 287 (298)
T TIGR03609 262 LILAAAAGVPFVALSYDPKVRAFAAD 287 (298)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHH
T ss_conf 99999779998995307999999997
No 341
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=32.70 E-value=31 Score=14.04 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=89.1
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCHHHH---HHHHHHCCCCCEEEEECCHHHHHHH-HHHCCCEE
Q ss_conf 320387888878999999998610---4786899970883799---9998418888699992998999876-66539379
Q gi|254780442|r 346 LRRIEPNETGADVISSAARQIAET---LRLSAIFCYTASGATG---LRAARERPKLEIIALSPMIQTARRL-ALVWGIHC 418 (480)
Q Consensus 346 ~~~~~~~~~~~~aIa~aav~lA~~---l~a~aIiv~T~sG~tA---~~iS~~RP~~pIiaiT~~~~t~r~l-~L~~GV~p 418 (480)
+....|..++.|.+|.+=..=|++ |+-..-|+=-.||+|- .+++.-|-..=|+++=.+-+..||- .-.||..=
T Consensus 32 LE~~NP~gSVKDR~A~~MI~~AE~~G~lk~G~~iiEaTSGNTGIaLAMvAAarGYkliL~MPetmS~ERr~~l~ayGA~L 111 (315)
T TIGR01136 32 LEGFNPGGSVKDRIALNMILDAEKRGLLKPGTTIIEATSGNTGIALAMVAAARGYKLILTMPETMSLERRKLLKAYGAEL 111 (315)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEE
T ss_conf 70669897665688899999998658878888898427784489999999861991899858871789999998709669
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCC--CC-------------------------CCCCEEEEEEEECCCCCCC
Q ss_conf 993687999999999999999888--87-------------------------7887799985222788886
Q gi|254780442|r 419 VVTEDASDSDDMVNRACRIVVEQG--FG-------------------------KPGDRIIISAGLPLGTPGS 463 (480)
Q Consensus 419 ~~~~~~~~~~~~i~~a~~~l~~~g--~i-------------------------~~GD~VVvv~G~p~~~~G~ 463 (480)
++.+..+-++-.+++|.+++.+.+ ++ -.|..=+.|||+ |+.|+
T Consensus 112 ~LT~~~~GM~GAi~kA~el~~~~p~~~~~l~QF~NpaNp~~H~~TTGpEIw~dt~G~id~FVaG~--GTGGT 181 (315)
T TIGR01136 112 ILTPAEEGMKGAIDKAEELAAETPNKYVMLDQFENPANPEAHRKTTGPEIWRDTDGRIDHFVAGV--GTGGT 181 (315)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCHHHHHHHCCCCEEEEEEEC--CCCCC
T ss_conf 88373357577899999999858896210332588521476230565799973289235899711--56751
No 342
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=32.68 E-value=6.2 Score=19.18 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 93799936879999999999999998888778877999
Q gi|254780442|r 415 GIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIII 452 (480)
Q Consensus 415 GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVv 452 (480)
|+-|++-|+-+|+.+++++|..+..+-|.+. ||.+.+
T Consensus 479 GllplfDPPR~DT~eTI~~A~~~GV~VKMvT-GDhlaI 515 (835)
T TIGR01647 479 GLLPLFDPPRHDTKETIERARELGVEVKMVT-GDHLAI 515 (835)
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCEEEEEE-HHHHHH
T ss_conf 7200278369873899999987697698970-026787
No 343
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=32.60 E-value=31 Score=14.03 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred ECCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 368799-9999999999999888877887799985
Q gi|254780442|r 421 TEDASD-SDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 421 ~~~~~~-~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
++...+ ....+-.++..+.+.|.+++||+|++.+
T Consensus 277 ~~~~GNt~sasip~~L~~~~~~g~l~~Gd~vll~g 311 (327)
T CHL00203 277 LEHYGNTSAASIPLALDEAIKDNKIQPGQIIVLSG 311 (327)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 76449668889999999999849999989999999
No 344
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=32.56 E-value=31 Score=14.02 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-CC--EEECCC--CE
Q ss_conf 79999999997399789998888898999999999999999749927999987898678865489-81--896589--99
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN-SK--VDLTEG--QI 92 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~-~~--i~l~~G--~~ 92 (480)
...+.|..-.+.|--|--+|+. +.|+.+..+ +++++.+.|+ |+.=.+|. ++-..+.. .. ..+.+. --
T Consensus 5 ~~k~lL~~A~~~~yAV~afNv~--n~e~~~avi----~AAee~~sPv-Iiq~s~~~-~~~~~~~~~~~~~~~~a~~~~VP 76 (281)
T PRK06806 5 QMKDLLMKANQENYGVGAFSVA--NMEMVMGAI----KAAEELSSPL-ILQIAEVR-LNHSPLHMIGPLMVAAAKKATVP 76 (281)
T ss_pred CHHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEECCHHH-HCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 6899999999879269997779--999999999----9999969998-99956433-32460999999999999747998
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCC
Q ss_conf 99953245564442212664422211336-5267406842210--------234-4541124551388087114564467
Q gi|254780442|r 93 FTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFP 162 (480)
Q Consensus 93 v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip 162 (480)
|.+..|.. -++..+.+.++.| +.|.+|.....|+ |.+ .+.-.+..+.+-|-.-+..-+..
T Consensus 77 V~lHLDHg--------~~~e~i~~ai~~GfsSVM~DgS~l~~eeNi~~Tkevve~Ah~~gv~VEaElG~igg~ed~~~-- 146 (281)
T PRK06806 77 VAVHFDHG--------MTFEKIKEALEIGFTSVMFDGSHYPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE-- 146 (281)
T ss_pred EEEECCCC--------CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--
T ss_conf 89973898--------99999999998299879960998999999999999999998859869997333377467766--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 85445556765567789988734885325058557734799999862003433555327856631178887533124752
Q gi|254780442|r 163 DTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 163 ~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimia 242 (480)
..+ ..+|+-+ +..+|. ++-++|++|+|+=... + .+ |=+-+.-++-|++|-+..+-=+|=
T Consensus 147 --~~~-~~~T~pe-ea~~Fv-~~TgvD~LAvaiGt~H-------------G--~y-k~~p~L~~d~L~~I~~~~~iPLVL 205 (281)
T PRK06806 147 --DIE-MLLTSTE-EAKRFA-EETDVDALAVAIGNAH-------------G--MY-NGDPNLRLDRLQEINDNVHIPLVL 205 (281)
T ss_pred --CCC-CCCCCHH-HHHHHH-HHHCCCEEEEECCCCC-------------C--CC-CCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf --667-5668989-999999-9859989987437554-------------5--65-899866999999999728999896
Q ss_pred CCCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 2220021587673689999999985139-83998057678888
Q gi|254780442|r 243 RGDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 243 RGDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
-|-=| +|.|+ +++|.+.| ..|=+.|.+...+.
T Consensus 206 HGgSG--~~~e~--------i~~ai~~Gi~KiNi~T~l~~a~~ 238 (281)
T PRK06806 206 HGGSG--ISPED--------FKQCIQHGIRKINVATATFNNVI 238 (281)
T ss_pred ECCCC--CCHHH--------HHHHHHCCCEEEEECHHHHHHHH
T ss_conf 49999--99999--------99999869838986757899999
No 345
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.53 E-value=31 Score=14.02 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCCCEEEEEEC-CCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHH-HCCCCCEEEE
Q ss_conf 78986788654-898189658999999532455644422126644222-1133652674
Q gi|254780442|r 70 LQGPKFRVGKF-ANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFA-SIKIGDRLLI 126 (480)
Q Consensus 70 l~GpkiR~g~~-~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~-~ik~Gd~I~i 126 (480)
..|..+|+|-+ ..+.+.-..|..+.|...+ ..+.+.+.|.+++. ..+.|.-+..
T Consensus 49 ~~~~~iRvGGlV~~gSi~r~~~~~~~F~itD---~~~~i~V~Y~G~lPdLF~EgqgVVv 104 (149)
T PRK13254 49 PAGKRFRLGGLVEKGSVQRGGDLTVRFVVTD---GNATVPVVYTGILPDLFREGQGVVA 104 (149)
T ss_pred CCCCEEEEEEEEEECCEEECCCCEEEEEEEC---CCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 6796799989997284785699759999977---9828999988879600139984999
No 346
>PRK10116 universal stress protein UspC; Provisional
Probab=32.37 E-value=31 Score=14.00 Aligned_cols=42 Identities=5% Similarity=0.228 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECC-CHHHHHHHHHHC-----CCCCEEEE
Q ss_conf 9999999861047868999708-837999998418-----88869999
Q gi|254780442|r 359 ISSAARQIAETLRLSAIFCYTA-SGATGLRAARER-----PKLEIIAL 400 (480)
Q Consensus 359 Ia~aav~lA~~l~a~aIiv~T~-sG~tA~~iS~~R-----P~~pIiai 400 (480)
.+..-.+.|++.+++.||+=++ ++...++.|.-| .+||++++
T Consensus 90 ~~~~I~~~a~e~~~DLIV~G~Hg~~~~~~l~Ssa~~vl~~s~~dVLiV 137 (142)
T PRK10116 90 LSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 899999999996999999905985489999888999963699988999
No 347
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=32.33 E-value=31 Score=13.99 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=43.4
Q ss_pred HHHHHHHHH-HHCCCCCEECCCCCCCC-----HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE----C
Q ss_conf 567789988-73488532505855773-----4799999862003433555327856631178887533124752----2
Q gi|254780442|r 174 KDREDLHAA-LQTCEVDWVALSFIQSA-----DDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVA----R 243 (480)
Q Consensus 174 kD~~di~~a-~~~~~vD~ialSfVr~~-----~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimia----R 243 (480)
.|.+++-.- ++++=.|-|.+|=-++. ++++.+|+.+. ++.++ +-+=--.+|+.++++.+||++|| |
T Consensus 161 ~~l~~~~~~Tver~laDAvi~SG~~tG~~~~~e~Lk~ak~~~~--~~pVl--~gsG~~~~N~~~ll~~AdG~ivat~~Kk 236 (261)
T TIGR00259 161 RDLESIVLDTVERGLADAVILSGKTTGTEVDLEELKLAKETVK--DTPVL--AGSGVNLENVEELLSIADGVIVATTIKK 236 (261)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC--CCEEE--EECCCCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 3668898644541698838981545788878888999987517--96699--8478798899999987398798356533
Q ss_pred -CCCCHHCCHHHHH
Q ss_conf -2200215876736
Q gi|254780442|r 244 -GDLGVEMALELIP 256 (480)
Q Consensus 244 -GDLg~e~~~e~vp 256 (480)
|...-+++.+.+-
T Consensus 237 ~G~~nn~vD~~Rv~ 250 (261)
T TIGR00259 237 DGKINNLVDQERVS 250 (261)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 88420042189999
No 348
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=32.25 E-value=31 Score=13.99 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCC--CCCHHHHHHH--HHHHHCCCCEEEEC
Q ss_conf 7368999999998513983998057678888288--9840347789--99985199689981
Q gi|254780442|r 254 LIPGIQKKLIRIARQLGKPVVIATQMLESMVTSP--FPTRAEVSDV--ATAVFEEADAIMLS 311 (480)
Q Consensus 254 ~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p--~PTRaEv~Dv--anav~dG~D~imLs 311 (480)
.+-.+-+.+-..|.+++.||++..|+=-.--..+ .+.+--.+|+ +-++.+-||.+++=
T Consensus 165 ~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l 226 (271)
T cd01122 165 ALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIAL 226 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEE
T ss_conf 99999999999999979977999526765355565668775666612430125328799999
No 349
>PRK05748 replicative DNA helicase; Provisional
Probab=32.09 E-value=32 Score=13.97 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 566311788875331247522220---02158767368999999998513983998
Q gi|254780442|r 223 PRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 223 ~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+-|+..||+++. | +.+||| |.--+.-|-.+........|.+.|+||..
T Consensus 187 ~TG~~~LD~~~~---G--~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~ 237 (448)
T PRK05748 187 PTGFRDLDKMTS---G--LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAI 237 (448)
T ss_pred ECCHHHHHHHHC---C--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 578278999827---9--88673799984799876899999999999856980899
No 350
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=32.07 E-value=32 Score=13.96 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCCCCCCCCHHHCCCCCEEEEE-CCCE
Q ss_conf 2212664422211336526740-6842
Q gi|254780442|r 106 RVMLPHPEIFASIKIGDRLLID-DGRV 131 (480)
Q Consensus 106 ~i~i~y~~l~~~ik~Gd~I~id-DG~i 131 (480)
.|+|+.... .++|||.||-| ||-+
T Consensus 129 dVpv~~~gv--~~~PG~~~YAD~dGil 153 (155)
T TIGR01935 129 DVPVTFAGV--TFVPGDYVYADEDGIL 153 (155)
T ss_pred EEEEECCCC--EEECCCEEEECCCCEE
T ss_conf 135762870--4207837887387038
No 351
>TIGR02404 trehalos_R_Bsub trehalose operon repressor; InterPro: IPR012770 This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from Escherichia coli..
Probab=32.00 E-value=18 Score=15.71 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=20.9
Q ss_pred EECCCCCCCC--CCCCCCCCCCHHHHHHHHHH
Q ss_conf 7114564467--85445556765567789988
Q gi|254780442|r 153 IADRKGISFP--DTFLTTQALTQKDREDLHAA 182 (480)
Q Consensus 153 l~s~Kgvnip--~~~i~l~~ltekD~~di~~a 182 (480)
|.+.+|..+. -+.+...++|+.|++.|.+.
T Consensus 165 lE~~lgL~ISYAqKEI~v~p~t~~D~~lLdL~ 196 (236)
T TIGR02404 165 LENELGLAISYAQKEITVEPLTDEDKELLDLD 196 (236)
T ss_pred HHHHCCCCCCEEEEEEEECCCCHHHHHHHCCC
T ss_conf 66541766101143788714996789986127
No 352
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=31.72 E-value=32 Score=13.92 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=46.8
Q ss_pred CEEEEEECCHHHHHHHHHHHHH-HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHH
Q ss_conf 3355532785663117888753-312475222200215876736899999999851398399805767888828898403
Q gi|254780442|r 214 IGLMSKIEKPRAIEYASEIIQL-SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRA 292 (480)
Q Consensus 214 ~~IiaKIE~~~al~nl~eI~~~-sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRa 292 (480)
++|. -++..-.-+|+++++.. .|-|+ | +.+--..| -.++..|.+.++|+|.+.- .-..--|||-
T Consensus 81 ~~v~-~~~~~~~~~n~~~ll~~~~D~Vv----D-aiD~~~~K-----~~l~~~c~~~~iplIss~G----ag~k~DPt~i 145 (231)
T cd00755 81 CEVD-AVEEFLTPDNSEDLLGGDPDFVV----D-AIDSIRAK-----VALIAYCRKRKIPVISSMG----AGGKLDPTRI 145 (231)
T ss_pred CEEE-EEHHHCCHHHHHHHHCCCCCEEE----E-CCCCHHHH-----HHHHHHHHHCCCEEEEECC----CCCCCCCCEE
T ss_conf 8899-86251599899998454777785----3-44248779-----9999999982990899867----3467577538
Q ss_pred HHHHHHHHHHC
Q ss_conf 47789999851
Q gi|254780442|r 293 EVSDVATAVFE 303 (480)
Q Consensus 293 Ev~Dvanav~d 303 (480)
.++|++....|
T Consensus 146 ~v~Dl~~T~~d 156 (231)
T cd00755 146 RVADISKTSGD 156 (231)
T ss_pred EEEEHHHHCCC
T ss_conf 98638850576
No 353
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=31.68 E-value=32 Score=13.92 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHHH
Q ss_conf 673689999999985139839980576
Q gi|254780442|r 253 ELIPGIQKKLIRIARQLGKPVVIATQM 279 (480)
Q Consensus 253 e~vp~~Qk~ii~~~~~~~kpvivATq~ 279 (480)
+++-.+-+.+=..|.+++.||++++|+
T Consensus 154 ~~v~~i~~~Lk~lA~e~~i~ii~~sQl 180 (186)
T pfam03796 154 QEISEISRSLKALAKELNIPVIALSQL 180 (186)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999999999979918997225
No 354
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=31.51 E-value=32 Score=13.90 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=6.8
Q ss_pred HHHHCCCCEEEEEC
Q ss_conf 99973997899988
Q gi|254780442|r 25 RLHEEGTDVFRINM 38 (480)
Q Consensus 25 ~l~~aG~nv~RiN~ 38 (480)
.+.+.|+.+.|+||
T Consensus 55 ~l~~~G~atlRfNf 68 (210)
T COG2945 55 ALVKRGFATLRFNF 68 (210)
T ss_pred HHHHCCCEEEEECC
T ss_conf 99868963896403
No 355
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=31.48 E-value=32 Score=13.90 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHEEEEEC----CCCC------HHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH------HHHHCCCC
Q ss_conf 311788875331247522----2200------2158767368999999998513983998057678------88828898
Q gi|254780442|r 226 IEYASEIIQLSDAVMVAR----GDLG------VEMALELIPGIQKKLIRIARQLGKPVVIATQMLE------SMVTSPFP 289 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaR----GDLg------~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~le------SM~~~p~P 289 (480)
..++++.++.+|-|.-+. |.+. ..-..|....+++.....- +..+|-.+-.++|+ +++-+|.|
T Consensus 236 ~~d~~eav~~aDVvytd~W~sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~v~~~~m~~a~~~~ai~MHclP 314 (357)
T TIGR03316 236 VNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQN-KKHKDWVCTEERMALTHDGEALYMHCLP 314 (357)
T ss_pred ECCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHCCCCCEEEECCCC
T ss_conf 759999956899998366401378888998860110567888777666567-7504751169999747897969979997
Q ss_pred C--HH------HHHHHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf 4--03------477899998519968998144435446589
Q gi|254780442|r 290 T--RA------EVSDVATAVFEEADAIMLSAETASGSYPVD 322 (480)
Q Consensus 290 T--Ra------Ev~Dvanav~dG~D~imLs~ETa~G~yP~~ 322 (480)
- |. ||+| .|.||--++.+ .|...|-|-..
T Consensus 315 a~~RGv~~R~~EIt~---eV~d~~~S~i~-~QAeNrl~~~~ 351 (357)
T TIGR03316 315 ADIRGVSCEEGEVTE---EVFDGYRSVIY-KEASNKPYTIA 351 (357)
T ss_pred CCCCCCCCCCCCCCH---HHHCCCCCHHH-HHHHHHHHHHH
T ss_conf 987788887771489---99679997099-88750499999
No 356
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=31.39 E-value=32 Score=13.89 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCCEECCCCC-CCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE----ECCCCCH
Q ss_conf 56778998873488532505855-773479999986200343355532785663117888753312475----2222002
Q gi|254780442|r 174 KDREDLHAALQTCEVDWVALSFI-QSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMV----ARGDLGV 248 (480)
Q Consensus 174 kD~~di~~a~~~~~vD~ialSfV-r~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimi----aRGDLg~ 248 (480)
-..+.....++..++-.+..||- -..+++..++.. +++++.++-+..--+...+ .-.|+++. |=|..|.
T Consensus 91 ~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~----g~~v~~~v~~~~~A~~~~~--~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 91 AAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAA----GIKVIHSVITVREALKAER--AGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC----CCEEEEEECCHHHHHHHHH--CCCCEEEECCCCCCCCCCC
T ss_conf 345631225642897679715899958899999974----9858985088999999981--7998899437767786899
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 15876736899999999851398399805767888828898403477899998519968998
Q gi|254780442|r 249 EMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIML 310 (480)
Q Consensus 249 e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imL 310 (480)
..+...+...-.++.+.++. -|||.|.-+-+. -+++.|..-|||++..
T Consensus 165 ~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~dg------------~~i~AAlalGA~gVq~ 212 (336)
T COG2070 165 VDLEVSTFALVPEVVDAVDG--IPVIAAGGIADG------------RGIAAALALGADGVQM 212 (336)
T ss_pred CCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCH------------HHHHHHHHHCCHHHHH
T ss_conf 88773188899999998548--978987686886------------9999999844168554
No 357
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=31.29 E-value=32 Score=13.87 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99999999739978999888889899999999999999974992799998789
Q gi|254780442|r 20 EDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQG 72 (480)
Q Consensus 20 ~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~G 72 (480)
.+..+++++.|-..|.+-..+++.+.-.+.++.+| +..+..+.|++|.-+
T Consensus 5 ~~~a~~~~~~Gf~~~Kik~g~~~~~~d~~~i~~ir---~~~g~~~~l~vD~n~ 54 (98)
T pfam01188 5 AAEAEEAVEAGFRAFKLKIGRGDLADDLARVAAVR---EAVGDDVRLRVDANQ 54 (98)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH---HHCCCCCEEEECCCC
T ss_conf 99999999879987997448999999999999999---975999879875865
No 358
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=31.22 E-value=33 Score=13.87 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHCCCCCEEEEECCCEEECCCCCC
Q ss_conf 211336526740684221023445
Q gi|254780442|r 116 ASIKIGDRLLIDDGRVKLCVQEKG 139 (480)
Q Consensus 116 ~~ik~Gd~I~idDG~i~l~V~~~~ 139 (480)
..+++|+.++-|.|+..++|++-.
T Consensus 60 ~~l~~G~~L~Sd~gR~m~tIv~DT 83 (233)
T TIGR03425 60 AYLTKGHVLLSDMGRVLASIVEDT 83 (233)
T ss_pred CCCCCCCEEEECCCCEEEEEECCC
T ss_conf 115799985879997269996567
No 359
>PRK05246 glutathione synthetase; Provisional
Probab=30.94 E-value=33 Score=13.83 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=6.8
Q ss_pred HHHHHHHCCCEEEEEHHHHH
Q ss_conf 99998513983998057678
Q gi|254780442|r 262 LIRIARQLGKPVVIATQMLE 281 (480)
Q Consensus 262 ii~~~~~~~kpvivATq~le 281 (480)
|+......|+--+++-+.|.
T Consensus 183 i~e~~t~~~~~~v~vQ~yl~ 202 (316)
T PRK05246 183 ILETLTEQGRRPVMAQRYLP 202 (316)
T ss_pred HHHHHHHCCCEEEEEEEEHH
T ss_conf 99999745873689886512
No 360
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=30.86 E-value=33 Score=13.83 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred HHHCCCCCEEEEECCCEEECCCCCCCCEE-EEEECCCC----EEEC-C--CCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 22113365267406842210234454112-45513880----8711-4--564467854455567655677899887348
Q gi|254780442|r 115 FASIKIGDRLLIDDGRVKLCVQEKGIGFI-KCKVIAGI----SIAD-R--KGISFPDTFLTTQALTQKDREDLHAALQTC 186 (480)
Q Consensus 115 ~~~ik~Gd~I~idDG~i~l~V~~~~~~~i-~c~V~~gG----~l~s-~--Kgvnip~~~i~l~~ltekD~~di~~a~~~~ 186 (480)
...+++||.|++|.|.-.+.+...=.+.- ...+.++- .|.. + .-+-++|..+.-...+--......+ ++..
T Consensus 86 a~lI~~g~~I~lD~GTT~~~la~~L~~~~~ltVvTNsl~ia~~l~~~~~~~~v~l~GG~~~~~~~s~~G~~a~~~-l~~~ 164 (256)
T PRK10434 86 VSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA-FEHF 164 (256)
T ss_pred HHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCHHHHHH-HHHH
T ss_conf 986899999998497689999998433699789989899999998469986799269678468773205999999-8752
Q ss_pred CCCE--ECCCCC------CCCHHHHHHHHHH-HCC-CCEEE---EEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHH
Q ss_conf 8532--505855------7734799999862-003-43355---532785663117888753312475222200215876
Q gi|254780442|r 187 EVDW--VALSFI------QSADDLLEIRKII-SQN-KIGLM---SKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALE 253 (480)
Q Consensus 187 ~vD~--ialSfV------r~~~di~~~r~~l-~~~-~~~Ii---aKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e 253 (480)
.+|. ++.+-+ .+..+...+++.+ ... ..-+. +|+....-..=.+ +..-|.++-+++ +|
T Consensus 165 ~~d~aFig~~gi~~~~g~t~~~e~~~vk~~m~~~s~~~illaDssKf~~~~~~~~~~--l~~id~lITD~~-----~~-- 235 (256)
T PRK10434 165 TFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCS--LEKVDKLITDAG-----ID-- 235 (256)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCEEEEC--HHHCCEEEECCC-----CC--
T ss_conf 787899844606578884673199999999998569889998621328714069857--798999998929-----99--
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf 7368999999998513983998057
Q gi|254780442|r 254 LIPGIQKKLIRIARQLGKPVVIATQ 278 (480)
Q Consensus 254 ~vp~~Qk~ii~~~~~~~kpvivATq 278 (480)
..+.+.+.++|.-||+|-+
T Consensus 236 ------~~~~~~l~~~gv~viia~e 254 (256)
T PRK10434 236 ------PAFRQALEEKGIEVIITGE 254 (256)
T ss_pred ------HHHHHHHHHCCCEEEEECC
T ss_conf ------9999999977998999469
No 361
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=30.66 E-value=33 Score=13.80 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCC
Q ss_conf 7854455567655677899887348853250585577
Q gi|254780442|r 162 PDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQS 198 (480)
Q Consensus 162 p~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~ 198 (480)
|+..++-.--.-+.+-+=..|. +-+.-.||+|-=|+
T Consensus 89 PD~sIpT~ETGtRHRTAeRvAk-QTg~~VIaVSqrr~ 124 (352)
T PRK13482 89 PDPSIPTSETGTRHRTAERVAK-QTGYPVIAVSQRRN 124 (352)
T ss_pred CCCCCCCCCCCCCHHHHHHHHH-HHCCEEEEEECCCC
T ss_conf 9999988877620567999999-86992899962347
No 362
>PRK08813 threonine dehydratase; Provisional
Probab=30.60 E-value=33 Score=13.79 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCH-----HHHHHHHHHCCCCC
Q ss_conf 8888789999999986104786899970883-----79999984188886
Q gi|254780442|r 352 NETGADVISSAARQIAETLRLSAIFCYTASG-----ATGLRAARERPKLE 396 (480)
Q Consensus 352 ~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG-----~tA~~iS~~RP~~p 396 (480)
.-.++-+++.||. ..+.-+.+++.-.-| ..++.+.+-+|+..
T Consensus 281 vvEpAgA~~lAA~---~~~~Gk~V~vilsGGNiD~~~l~~il~~~~~~~g 327 (349)
T PRK08813 281 IAEGAGALALAAG---RRVSGKRKCAVVSGGNIDATVLATLLSEVRPRPP 327 (349)
T ss_pred EEEHHHHHHHHHH---HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8750889999758---7729994899969877098999999860101145
No 363
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=30.55 E-value=33 Score=13.79 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 5325058557734799999862003433555327856631178887
Q gi|254780442|r 188 VDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 188 vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~ 233 (480)
..|+ |+-==++++|.++-+.++...+=+=|.+|+.-|+++.+.|-
T Consensus 146 ~~~~-LAGGL~~~NV~~ai~~~~p~gVDvsSGVE~~pG~KD~~ki~ 190 (195)
T pfam00697 146 LPVI-LAGGLTPENVSEAIQTLGPAGVDVSSGVETNPGVKDLEKIR 190 (195)
T ss_pred CCEE-EECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 8789-94688989999999852998999407016889976999999
No 364
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=30.51 E-value=33 Score=13.78 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=48.9
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCC--HHHCCCCCEEEEECCCEEECCCCCC----CCEEE-EEECCCCEEECCCC
Q ss_conf 96589999995324556444221266442--2211336526740684221023445----41124-55138808711456
Q gi|254780442|r 86 DLTEGQIFTLDNKDSLGSSDRVMLPHPEI--FASIKIGDRLLIDDGRVKLCVQEKG----IGFIK-CKVIAGISIADRKG 158 (480)
Q Consensus 86 ~l~~G~~v~l~~~~~~~~~~~i~i~y~~l--~~~ik~Gd~I~idDG~i~l~V~~~~----~~~i~-c~V~~gG~l~s~Kg 158 (480)
.+++|+++.+-.....-.-..+.+-+|.. ...++.|+.=|+ ..-+.++. +|.++ +..-..-.|...|.
T Consensus 221 ~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~-----~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~ 295 (603)
T COG0481 221 TLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYI-----IAGIKDVRDARVGDTITLASNPATEPLPGFKE 295 (603)
T ss_pred EECCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEE-----EEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 3447998999746976888887511676332464457734489-----98511115686555675067877666888776
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC
Q ss_conf 446785445556765567789988734885325058557
Q gi|254780442|r 159 ISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQ 197 (480)
Q Consensus 159 vnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr 197 (480)
+ .|-....+.++...|.++++-|++++..+=-+++|-.
T Consensus 296 ~-~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~ 333 (603)
T COG0481 296 V-KPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP 333 (603)
T ss_pred C-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 7-8559984111666678999999974433530156322
No 365
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=30.50 E-value=33 Score=13.78 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHCCCCCEEEEEC----CCH-HHHHHHHHHCCCCCEEEEECCHH-HHHHHHHHCCCEEEEECCCCC
Q ss_conf 99986104786899970----883-79999984188886999929989-998766653937999368799
Q gi|254780442|r 363 ARQIAETLRLSAIFCYT----ASG-ATGLRAARERPKLEIIALSPMIQ-TARRLALVWGIHCVVTEDASD 426 (480)
Q Consensus 363 av~lA~~l~a~aIiv~T----~sG-~tA~~iS~~RP~~pIiaiT~~~~-t~r~l~L~~GV~p~~~~~~~~ 426 (480)
|.+....-..+.|++-- .+| ..++.+.+..|..||+.+|-+.. -.+.-.+--|+.-++.++++.
T Consensus 34 al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~~~~~~~~~a~~~Ga~~yl~KP~~~ 103 (111)
T pfam00072 34 ALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHGDEEDAVEALKAGANDFLSKPFDP 103 (111)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCH
T ss_conf 9999984799899995368995015799999735999809999750899999999977987799499998
No 366
>PRK06836 aspartate aminotransferase; Provisional
Probab=30.48 E-value=33 Score=13.78 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 999852227888864159999945
Q gi|254780442|r 450 IIISAGLPLGTPGSTNMLRIAYIG 473 (480)
Q Consensus 450 VVvv~G~p~~~~G~TN~irv~~Vg 473 (480)
|+++-|..+|.. +.+|+-...
T Consensus 354 V~vvPG~~Fg~~---g~vRls~a~ 374 (396)
T PRK06836 354 ILLVPGSGFGAP---GYFRLAYCV 374 (396)
T ss_pred EEEEECCCCCCC---CCEEEEECC
T ss_conf 999827435999---808999708
No 367
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.32 E-value=34 Score=13.76 Aligned_cols=219 Identities=14% Similarity=0.175 Sum_probs=99.3
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC--CC-EEECC--CCEE
Q ss_conf 9999999997399789998888898999999999999999749927999987898678865489--81-89658--9999
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFAN--SK-VDLTE--GQIF 93 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~--~~-i~l~~--G~~v 93 (480)
..+.|..=.+.|--|-=+|+. +.|..+.. =+++++.+.|+ |+.=.+|. ++-..+.. .- ..+.+ +=-|
T Consensus 6 ~k~lL~~A~~~~yAV~AfNv~--~~e~~~Av----i~AAee~~sPv-Ilq~~~~~-~~~~g~~~~~~~~~~~a~~~~VPV 77 (284)
T PRK09195 6 TRQMLNNAQRGGYAVPAFNIH--NLETMQVV----VETAAELHSPV-IIAGTPGT-FSYAGTEYLLAIVSAAAKQYHHPL 77 (284)
T ss_pred HHHHHHHHHHCCEEEEEEEEC--CHHHHHHH----HHHHHHHCCCE-EEECCHHH-HHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 899999999879079987778--89999999----99999959998-99988516-644798999999999998779988
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCC
Q ss_conf 9953245564442212664422211336-5267406842210--------234-45411245513880871145644678
Q gi|254780442|r 94 TLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPD 163 (480)
Q Consensus 94 ~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~ 163 (480)
.+..|... ++..+-+.++.| +.|.+|-..+.|+ |.+ .+.-.+..+.+-|..-+...++....
T Consensus 78 ~lHLDH~~--------~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (284)
T PRK09195 78 ALHLDHHE--------KFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDE 149 (284)
T ss_pred EEECCCCC--------CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCC
T ss_conf 99669879--------9999999997499868863898999999999999999998728818997400156577877666
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 54455567655677899887348853250585577347999998620034335553278566311788875331247522
Q gi|254780442|r 164 TFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 164 ~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR 243 (480)
. -..+|+- .+..+|. +.-+||++|+|+=...- . -|=+.+.-++-|++|-+..|-=+|=-
T Consensus 150 ~---~~~~T~p-eea~~Fv-~~TgvD~LAvaiGt~HG---------------~-yk~~p~L~~~~L~~I~~~~~vPLVLH 208 (284)
T PRK09195 150 K---DALYTDP-AQAREFV-EATGIDSLAVAIGTAHG---------------M-YKSAPKLDFDRLENIRQWVNIPLVLH 208 (284)
T ss_pred C---CCCCCCH-HHHHHHH-HHHCCCEEEEEECCCCC---------------C-CCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 3---2356899-9999999-97599889865065455---------------5-58988459999999999749998987
Q ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 220021587673689999999985139-83998057678888
Q gi|254780442|r 244 GDLGVEMALELIPGIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 244 GDLg~e~~~e~vp~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
|-=| +|.|+ +++|.+.| ..+=+.|++...+.
T Consensus 209 GgSG--~~~e~--------i~~ai~~Gv~KiNi~T~l~~a~~ 240 (284)
T PRK09195 209 GASG--LPTKD--------IQQTIKLGICKVNVATELKIAFS 240 (284)
T ss_pred CCCC--CCHHH--------HHHHHHCCCEEEEECHHHHHHHH
T ss_conf 8999--89999--------99999849769986858999999
No 368
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=30.29 E-value=34 Score=13.76 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=51.4
Q ss_pred CCCCEEE-EEECCCCEEEEE----------EC--CCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEE
Q ss_conf 4992799-998789867886----------54--8981896589999995324556444221266442221133652674
Q gi|254780442|r 60 SRRPIGI-LIDLQGPKFRVG----------KF--ANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLI 126 (480)
Q Consensus 60 ~~~~i~I-l~Dl~GpkiR~g----------~~--~~~~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~i 126 (480)
....+-| .-|+-=|++.+- ++ ..+.+.+++|+.|+++.....+-++-+.++--++-..++.|..-.
T Consensus 25 ~~f~vvinaydttipel~vegvtvknirAFnvlnEPetivVkKGd~VKitienkspis~GFsId~YGI~evik~Getkt- 103 (135)
T TIGR03096 25 QSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETKT- 103 (135)
T ss_pred CCEEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEEECCCEEEEEEEECCCCCCCEEEECCCEEEEECCCCEEE-
T ss_conf 5428999713376772465147887457677226885189805987999997169888771772145002563897389-
Q ss_pred ECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCC
Q ss_conf 068422102344541124551388087114564467854
Q gi|254780442|r 127 DDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTF 165 (480)
Q Consensus 127 dDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip~~~ 165 (480)
++|..-+.+-=.+.|. ..-|.+++||..
T Consensus 104 ----vsF~ADKaGtf~I~Cq-------lHP~nihlpgsl 131 (135)
T TIGR03096 104 ----ISFKADKAGAFTIWCQ-------LHPKNIHLPGSL 131 (135)
T ss_pred ----EEEEECCCCEEEEEEE-------CCCCCCCCCCCC
T ss_conf ----9998258852787765-------276432478732
No 369
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=30.29 E-value=8.1 Score=18.31 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=19.5
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 88532505855773479999986200
Q gi|254780442|r 186 CEVDWVALSFIQSADDLLEIRKIISQ 211 (480)
Q Consensus 186 ~~vD~ialSfVr~~~di~~~r~~l~~ 211 (480)
.++-||||+||... +..++|++..+
T Consensus 90 ~~~r~VaL~fv~~~-~~~~i~~it~~ 114 (169)
T pfam08303 90 TNLKVIALSFVDED-DLEEVREITRD 114 (169)
T ss_pred CCEEEEEEEECCCC-CHHHHHHHHHH
T ss_conf 87389999801699-86999999999
No 370
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.12 E-value=34 Score=13.74 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=18.9
Q ss_pred CCEEEEECCCHHHHHHH-----HHHCCCCCEEEEECCHH
Q ss_conf 86899970883799999-----84188886999929989
Q gi|254780442|r 372 LSAIFCYTASGATGLRA-----ARERPKLEIIALSPMIQ 405 (480)
Q Consensus 372 a~aIiv~T~sG~tA~~i-----S~~RP~~pIiaiT~~~~ 405 (480)
-+.++.+|.||+|.-++ +| |-..+|+++|-++.
T Consensus 87 ~DvviaiS~SGeT~el~~~~~~aK-~~g~~liaiT~~~~ 124 (202)
T COG0794 87 GDVVIAISGSGETKELLNLAPKAK-RLGAKLIAITSNPD 124 (202)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEECCCC
T ss_conf 889999808971779999999999-75994899958999
No 371
>PRK08082 consensus
Probab=30.11 E-value=34 Score=13.74 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEEE------HHHHHHHHH--------
Q ss_conf 566311788875331247522220---021587673689999999985139839980------576788882--------
Q gi|254780442|r 223 PRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVIA------TQMLESMVT-------- 285 (480)
Q Consensus 223 ~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpvivA------Tq~leSM~~-------- 285 (480)
+-|+..||+++. |. .+||| |.--+.-|.-+........|.+.|+||..- .|+.+=|+.
T Consensus 187 ~TGf~~LD~lt~---G~--~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~s~i~~~ 261 (453)
T PRK08082 187 PTGFTELDRMTA---GF--QRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAEGNIDAQ 261 (453)
T ss_pred CCCHHHHHHHHC---CC--CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHH
T ss_conf 488488886414---77--7585799986788757899999999999855994899731389899999999715588866
Q ss_pred ---CCCCCHHHHHHHHHHHHC
Q ss_conf ---889840347789999851
Q gi|254780442|r 286 ---SPFPTRAEVSDVATAVFE 303 (480)
Q Consensus 286 ---~p~PTRaEv~Dvanav~d 303 (480)
+..-|..|...+..|+..
T Consensus 262 ~i~~g~l~~~e~~~i~~a~~~ 282 (453)
T PRK08082 262 RLRTGSLTSDDWGKLTMAMGS 282 (453)
T ss_pred HHHCCCCCHHHHHHHHHHHHH
T ss_conf 775189999999999999998
No 372
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=30.03 E-value=34 Score=13.73 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCCCEEEEECCCHHHHHH-----HHHHCCCCCEEEEECC
Q ss_conf 0478689997088379999-----9841888869999299
Q gi|254780442|r 369 TLRLSAIFCYTASGATGLR-----AARERPKLEIIALSPM 403 (480)
Q Consensus 369 ~l~a~aIiv~T~sG~tA~~-----iS~~RP~~pIiaiT~~ 403 (480)
--.-+.+|+++.||+|... +++.| .+|++++|..
T Consensus 173 ~~~~Dvvi~iS~sG~t~e~i~~~~~Ak~~-ga~vIaIT~~ 211 (284)
T PRK11302 173 SSDGDVVVLISHTGRTKSLVELAQLAREN-GATVIGITAA 211 (284)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEECCC
T ss_conf 99988899973799987999999999987-9958997799
No 373
>PRK13113 consensus
Probab=29.95 E-value=34 Score=13.72 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 3117888753312475222200215876736899999999851-398399805767888828898403477899998519
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQ-LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~-~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG 304 (480)
-+.+..|.+.++|-+-.=+-.|+-=.-...+.-.+..+.+.++ ..+|+.+-.-+ -|. +-+..+..+
T Consensus 160 ~~Ri~~i~~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI---------~~~----e~~~~~~~~ 226 (263)
T PRK13113 160 DRRLPKVLQNTSGFVYYVSITGITGAAAAQAADVAPEVARIKAATDLPVIVGFGI---------TTP----EAAQAIAGV 226 (263)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC---------CCH----HHHHHHHCC
T ss_conf 9999999833898489983455668775543779999999985479988998378---------998----999999733
Q ss_pred CCEEEEC
Q ss_conf 9689981
Q gi|254780442|r 305 ADAIMLS 311 (480)
Q Consensus 305 ~D~imLs 311 (480)
+||+...
T Consensus 227 ADGvIVG 233 (263)
T PRK13113 227 ADGCVVG 233 (263)
T ss_pred CCEEEEC
T ss_conf 9999986
No 374
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.91 E-value=34 Score=13.71 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=10.8
Q ss_pred HHHHHHHCC-CCEEEEEECCCCEEE
Q ss_conf 999999749-927999987898678
Q gi|254780442|r 53 IRAVELRSR-RPIGILIDLQGPKFR 76 (480)
Q Consensus 53 ir~~~~~~~-~~i~Il~Dl~GpkiR 76 (480)
||+..++.+ .|+=-++|+...+..
T Consensus 508 vr~~R~~~~i~P~yK~VDTcA~EF~ 532 (1068)
T PRK12815 508 VRELRKKLGIRPSFKMVDTCAAEFE 532 (1068)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 9999997699558984277455546
No 375
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=29.91 E-value=34 Score=13.71 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=6.2
Q ss_pred EEECCCCCCCHHHHH
Q ss_conf 994187757999999
Q gi|254780442|r 10 ISTLGPSSFSEDVIN 24 (480)
Q Consensus 10 i~TlGPas~~~e~i~ 24 (480)
||.+|..-.-+.+|-
T Consensus 3 iaiiGHvd~GKTTL~ 17 (179)
T cd01890 3 FSIIAHIDHGKSTLA 17 (179)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 999948998989999
No 376
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=29.85 E-value=34 Score=13.71 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH--HHHHHHHHHHHCCC
Q ss_conf 1788875331247522220021587673689999999985139839980576788882889840--34778999985199
Q gi|254780442|r 228 YASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTR--AEVSDVATAVFEEA 305 (480)
Q Consensus 228 nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTR--aEv~Dvanav~dG~ 305 (480)
.+++| +.+|.|+|-=-|+. |.-|.+-.+|.+..++.|.++|+. .|+.|+ +...|..-.+.-|+
T Consensus 382 s~~Di-e~AD~IlviGsN~~-----e~hPvl~~rirkA~r~~gaklivI---------dPr~t~~~~~~a~~~l~~~PGt 446 (809)
T PRK07860 382 TYADL-ESAPAVLLVGFEPE-----EESPIVFLRLRKAARKHGLPVYAI---------APFATRGLTKMSGRLIPTAPGG 446 (809)
T ss_pred CHHHH-HHCCEEEEEECCCH-----HHCHHHHHHHHHHHHHCCCEEEEE---------CCCCCHHHHHHHHCCCCCCCCC
T ss_conf 98999-74998999947812-----557699999999998589979998---------8889746888762323268995
Q ss_pred C
Q ss_conf 6
Q gi|254780442|r 306 D 306 (480)
Q Consensus 306 D 306 (480)
|
T Consensus 447 d 447 (809)
T PRK07860 447 E 447 (809)
T ss_pred H
T ss_conf 5
No 377
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=29.75 E-value=34 Score=13.70 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCCCCCHHH-HHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 877579999-999997399789-998888898999999999999999749927
Q gi|254780442|r 14 GPSSFSEDV-INRLHEEGTDVF-RINMSHTSHDKMCELIKKIRAVELRSRRPI 64 (480)
Q Consensus 14 GPas~~~e~-i~~l~~aG~nv~-RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i 64 (480)
||++++||. |.++.++|++-. =+=-.=|.--....++.+-|++++| |..|
T Consensus 73 G~~TRTPE~~Ls~~t~~GvTtvVG~lGTDgi~R~m~~L~AKArAL~eE-Gvs~ 124 (391)
T TIGR01975 73 GPKTRTPELTLSDITKGGVTTVVGLLGTDGITRDMESLLAKARALEEE-GVSC 124 (391)
T ss_pred CCCCCCHHHECCCEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHC-CEEE
T ss_conf 688884322301201126248988862786225846789999865207-8269
No 378
>PRK06321 replicative DNA helicase; Provisional
Probab=29.66 E-value=34 Score=13.68 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH---HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 566311788875---331247522220021587673689999999985139839980
Q gi|254780442|r 223 PRAIEYASEIIQ---LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 223 ~~al~nl~eI~~---~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
+-|+..||+++. .+|-++| |.--+.-|.-+++......|.+.++||.+-
T Consensus 210 pTGf~~LD~lt~Gl~~Gdlivi-----aaRPsmGKTalalnia~~~a~~~~~~v~~f 261 (472)
T PRK06321 210 PTHFIDLDKMINGFSPSNLMIL-----AARPAMGKTALALNIAENFCFQNRLPVGIF 261 (472)
T ss_pred CCCHHHHHHHHCCCCCCCEEEE-----ECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 5684889998559886757998-----538999779999999999998569946997
No 379
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=29.44 E-value=35 Score=13.66 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3479999986200343355532785663117888753--31247522220021587673689999999985139839980
Q gi|254780442|r 199 ADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQL--SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 199 ~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~--sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
.-|-..+..+|.+.. ++..-+++|-+.++. .|||-|+=-.+..+ ..+.....-+++-..+++.|+-+.++
T Consensus 73 ~~~~~~~~~lL~d~~-------~R~~~i~~i~~~~~~~~~dGi~iD~E~~~~~-d~~~~~~fv~eL~~~l~~~g~~l~v~ 144 (298)
T cd06549 73 AWDGKNIARLLADPS-------ARAKFIANIAAYLERNQADGIVLDFEELPAD-DLPKYVAFLSELRRRLPAQGKQLTVT 144 (298)
T ss_pred CCCHHHHHHHHCCHH-------HHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 898789999837999-------9999999999999982998399986789989-99999999999999986629889999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE--CCCCCCC--CCHHHHHHHHHHHHHHH
Q ss_conf 5767888828898403477899998519968998--1444354--46589999999988763
Q gi|254780442|r 277 TQMLESMVTSPFPTRAEVSDVATAVFEEADAIML--SAETASG--SYPVDAVRTMSLVASSA 334 (480)
Q Consensus 277 Tq~leSM~~~p~PTRaEv~Dvanav~dG~D~imL--s~ETa~G--~yP~~~v~~~~~i~~~~ 334 (480)
- |.++. --| ..++.+-+|.+.| =.|-..| .-|+....|..+.+..+
T Consensus 145 v---------p~~~~--~~d-~~~l~~~~D~v~lMtYD~h~~~~~pGPvA~~~Wv~~~l~~~ 194 (298)
T cd06549 145 V---------PADEA--DWN-LKALARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQA 194 (298)
T ss_pred E---------ECCCC--CCC-HHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8---------47986--427-79998657899998203588889889647566899999999
No 380
>pfam01634 HisG ATP phosphoribosyltransferase.
Probab=29.30 E-value=26 Score=14.53 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=9.7
Q ss_pred HHHHHHHCCC-CCEEEEECCCHHHH
Q ss_conf 9999861047-86899970883799
Q gi|254780442|r 362 AARQIAETLR-LSAIFCYTASGATG 385 (480)
Q Consensus 362 aav~lA~~l~-a~aIiv~T~sG~tA 385 (480)
+|+++|-.++ |++|+=.|+||.|-
T Consensus 94 GavE~aP~~g~AD~IvDiv~TG~TL 118 (161)
T pfam01634 94 GSVEAAPALGIADAIVDLVSTGETL 118 (161)
T ss_pred CCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 7334466667666899997888999
No 381
>pfam02599 CsrA Global regulator protein family. This is a family of global regulator proteins. This protein is a RNA-binding protein and a global regulator of carbohydrate metabolism genes facilitating mRNA decay. In E. coli CsrA binds the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara RmsA has been shown to regulate the production of virulence determinants, such extracellular enzymes. RmsA binds to RmsB regulatory RNA.
Probab=29.27 E-value=35 Score=13.64 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCCCEEEEECCCEEECCCCCCCCEEE
Q ss_conf 133652674068422102344541124
Q gi|254780442|r 118 IKIGDRLLIDDGRVKLCVQEKGIGFIK 144 (480)
Q Consensus 118 ik~Gd~I~idDG~i~l~V~~~~~~~i~ 144 (480)
=|+|..|.|+| .|..+|.+++++.++
T Consensus 6 Rk~gE~I~Igd-~I~i~Vl~i~~~~Vr 31 (53)
T pfam02599 6 RKVGESIVIGD-DIEITVLEVKGGQVR 31 (53)
T ss_pred EECCCEEEECC-CEEEEEEEEECCEEE
T ss_conf 13899899699-989999997099899
No 382
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.19 E-value=35 Score=13.63 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 9999999999999888877887799985
Q gi|254780442|r 427 SDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 427 ~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
....+-.++..+.+.|.+++||+|++++
T Consensus 278 ~sasipi~L~~~~~~g~lk~Gd~vll~~ 305 (319)
T PRK09352 278 SAASIPLALDEAVRDGRIKRGDLVLLEG 305 (319)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8878999999999839999979999999
No 383
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.15 E-value=35 Score=13.62 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=26.8
Q ss_pred HHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHH---HCCCCEEEECCCCCCCCCH
Q ss_conf 9999851398399805767888828898403477899998---5199689981444354465
Q gi|254780442|r 262 LIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAV---FEEADAIMLSAETASGSYP 320 (480)
Q Consensus 262 ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav---~dG~D~imLs~ETa~G~yP 320 (480)
+-..+++.|-.+.-.+-+=+ +...+.+++ .+.+|.|+.||-|+.|.+=
T Consensus 22 l~~~l~~~G~~v~~~~~v~D-----------d~~~i~~~l~~~~~~~DliittGG~g~g~~D 72 (140)
T pfam00994 22 LAALLREAGAEVIRYGIVPD-----------DPEAIKEALAAAADEADVVITTGGTGPGPDD 72 (140)
T ss_pred HHHHHHHCCCEEEEEEEECC-----------CHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 99999987993779989788-----------9999999999973269999987887789898
No 384
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=29.07 E-value=35 Score=13.61 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=9.6
Q ss_pred ECCHHHHHHHH-HHCCCEEEEECC
Q ss_conf 29989998766-653937999368
Q gi|254780442|r 401 SPMIQTARRLA-LVWGIHCVVTED 423 (480)
Q Consensus 401 T~~~~t~r~l~-L~~GV~p~~~~~ 423 (480)
+.--.+||+|+ -+.-+-.++.+.
T Consensus 71 ~~~Ye~AR~L~etlPd~R~iF~Er 94 (205)
T TIGR01367 71 ILGYEVARALSETLPDVRSIFAER 94 (205)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 688899987410068885267776
No 385
>pfam03325 Herpes_PAP Herpesvirus polymerase accessory protein. The same proteins are also known as polymerase processivity factors.
Probab=29.04 E-value=35 Score=13.61 Aligned_cols=90 Identities=13% Similarity=0.289 Sum_probs=47.5
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC------EEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCC
Q ss_conf 99739978999888889899999999999999974992------799998789867886548981896589999995324
Q gi|254780442|r 26 LHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP------IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKD 99 (480)
Q Consensus 26 l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~------i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~l~~~~ 99 (480)
+-+.|-..+|+++.|..--+..++|.-.-+.....++. +.|++----|-|.--.-.+.++++..+..|.|..-
T Consensus 21 VREsg~SavrvDLD~svV~ElikWiaP~tr~KRn~Kk~~~p~~tvQIlvhanPPtiKFil~~~sElEFta~nrVsFH~V- 99 (268)
T pfam03325 21 VRESGKSAVRVDLDHSVVSELLKWIAPHTRVKRNGKKAPCPTTTAQILVHANPPTIKFILTEGSELEFTASNRVSFHDV- 99 (268)
T ss_pred HHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCCEEEEEEC-
T ss_conf 3315885469843258999999885764413346666888754078999549981689835885578850771787421-
Q ss_pred CCCCCCCCCCCCCCCHHHCC
Q ss_conf 55644422126644222113
Q gi|254780442|r 100 SLGSSDRVMLPHPEIFASIK 119 (480)
Q Consensus 100 ~~~~~~~i~i~y~~l~~~ik 119 (480)
.+-++.+.-++|.+.+.
T Consensus 100 ---KnmR~~vq~KNl~qal~ 116 (268)
T pfam03325 100 ---KNMRINVQLKNLQQALS 116 (268)
T ss_pred ---CEEEEEEEHHHHHHHHH
T ss_conf ---12589976567999976
No 386
>PRK13140 consensus
Probab=29.03 E-value=35 Score=13.61 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=25.3
Q ss_pred EECC-CC-CCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9418-77-579999999997399789998888898999999999
Q gi|254780442|r 11 STLG-PS-SFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKK 52 (480)
Q Consensus 11 ~TlG-Pa-s~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ 52 (480)
-|.| |+ -.+.+.++.|.++|+|+.-|-+-+-++-.--.+|+.
T Consensus 20 ~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~ 63 (257)
T PRK13140 20 FTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQK 63 (257)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 81828987999999999997599999978988987765899999
No 387
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=28.85 E-value=22 Score=15.09 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCCCEEEEE
Q ss_conf 9999998610478689997
Q gi|254780442|r 360 SSAARQIAETLRLSAIFCY 378 (480)
Q Consensus 360 a~aav~lA~~l~a~aIiv~ 378 (480)
....+.--..++|+.|+++
T Consensus 262 ~~~~~~~Lk~~GA~~IlV~ 280 (287)
T PRK00489 262 VWELMEKLKALGAEGILVL 280 (287)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 9999999997699769996
No 388
>pfam10398 DUF2443 Protein of unknown function (DUF2443). This is a small family of highly conserved proteins from bacteria, in particular Helicobacter species, The structure is a bundle of alpha helices. The function is not known.
Probab=28.78 E-value=24 Score=14.80 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=21.2
Q ss_pred HHHHEEEEECCCCCHH--CCHHHHHHHH------HHHHHHHHHCCCEE
Q ss_conf 5331247522220021--5876736899------99999985139839
Q gi|254780442|r 234 QLSDAVMVARGDLGVE--MALELIPGIQ------KKLIRIARQLGKPV 273 (480)
Q Consensus 234 ~~sDgimiaRGDLg~e--~~~e~vp~~Q------k~ii~~~~~~~kpv 273 (480)
.-.|.|||-||-+-+- ++...+..+- |.-|..-|+..|.+
T Consensus 29 S~~DyImIKRGS~DmPe~l~~~~l~qid~ev~kLK~~IdaLNKiKke~ 76 (79)
T pfam10398 29 SLGDYIMIKRGSMDMPEHLNEAFLTQIDEEVEKLKELINALNKIKKEL 76 (79)
T ss_pred HHHHHHEEECCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 245762011376657431078999988999999999999999998888
No 389
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=28.59 E-value=36 Score=13.56 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC-CEE
Q ss_conf 9999999973997899988888989999999999999997499-279
Q gi|254780442|r 20 EDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR-PIG 65 (480)
Q Consensus 20 ~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~-~i~ 65 (480)
++.+++-++.||||||| | -...+-+.+-.-|+++ ++.|. |+.
T Consensus 94 e~FV~~a~~NG~DVFRi-F--DALND~RNl~~ai~a~-Kk~g~dHvQ 136 (616)
T TIGR01108 94 EAFVKKAVENGLDVFRI-F--DALNDPRNLQKAIEAA-KKHGADHVQ 136 (616)
T ss_pred HHHHHHHHHCCCEEEEE-E--CCCCCHHHHHHHHHHH-HHHCCCEEE
T ss_conf 99999999759808995-1--2458877899999999-973897899
No 390
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.39 E-value=36 Score=13.53 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCEEE--EEHHHHHHHHHCCCCCH
Q ss_conf 6899999999851398399--80576788882889840
Q gi|254780442|r 256 PGIQKKLIRIARQLGKPVV--IATQMLESMVTSPFPTR 291 (480)
Q Consensus 256 p~~Qk~ii~~~~~~~kpvi--vATq~leSM~~~p~PTR 291 (480)
|...+.-|..|++.|-||| +-|+---..++-|+|+.
T Consensus 165 p~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~N 202 (252)
T COG0052 165 PRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGN 202 (252)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCC
T ss_conf 81768999999975999899841899976576552288
No 391
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.32 E-value=36 Score=13.52 Aligned_cols=46 Identities=26% Similarity=0.218 Sum_probs=31.6
Q ss_pred HHHHCCCCCEEEEECCCHHHHHH-----HHHHCCCCCEEEEECC-HHHHHHHH
Q ss_conf 98610478689997088379999-----9841888869999299-89998766
Q gi|254780442|r 365 QIAETLRLSAIFCYTASGATGLR-----AARERPKLEIIALSPM-IQTARRLA 411 (480)
Q Consensus 365 ~lA~~l~a~aIiv~T~sG~tA~~-----iS~~RP~~pIiaiT~~-~~t~r~l~ 411 (480)
.++.--.-+..|++|.||+|... .++.|- +||+++|.+ .....+++
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~g-a~vIaiT~~~~spla~~A 222 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERG-AKVIAITDSADSPLAKLA 222 (281)
T ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHC
T ss_conf 9983899988999848999689999999999779-929998399999366654
No 392
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.29 E-value=36 Score=13.52 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECC
Q ss_conf 736899999999851-3983998057678888288984034778999985-1996899814
Q gi|254780442|r 254 LIPGIQKKLIRIARQ-LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVF-EEADAIMLSA 312 (480)
Q Consensus 254 ~vp~~Qk~ii~~~~~-~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~-dG~D~imLs~ 312 (480)
+-|..-+.+++.+++ ..+|+++= -.|--.++.+++.++. -|+||+.++.
T Consensus 151 ~~~~~l~~i~~~v~~~~~~Pi~vK----------LsP~~~~i~~ia~~~~~~gadgiv~~N 201 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 499999999999986247864896----------288715499999999985998999976
No 393
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=28.20 E-value=36 Score=13.51 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHH
Q ss_conf 876736899999999851398399805767888828898403
Q gi|254780442|r 251 ALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRA 292 (480)
Q Consensus 251 ~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRa 292 (480)
++=+.|+++|+|=+.++..|-|. =|+++--+-.+.|||.
T Consensus 184 GYV~TPLV~~Qi~DqAk~rGi~e---E~V~~~VmL~~~P~k~ 222 (258)
T TIGR01963 184 GYVRTPLVEKQIADQAKTRGIPE---EQVIREVMLKKQPTKR 222 (258)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCH---HHHHHHHCCCCCCCCC
T ss_conf 75675546765899986518899---8888986078889841
No 394
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=28.05 E-value=37 Score=13.49 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=8.4
Q ss_pred HHHHHHHCCCCEEEEC
Q ss_conf 8999985199689981
Q gi|254780442|r 296 DVATAVFEEADAIMLS 311 (480)
Q Consensus 296 Dvanav~dG~D~imLs 311 (480)
|+.-|+.-|+|=|||=
T Consensus 198 ~a~eA~~AGADiImLD 213 (276)
T TIGR00078 198 EAEEAAEAGADIIMLD 213 (276)
T ss_pred HHHHHHHCCCCEEECC
T ss_conf 9999997099599806
No 395
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.04 E-value=37 Score=13.49 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=45.8
Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHC----CCCCEEE
Q ss_conf 51996899814443544658999999998876301012444444320387888-878999999998610----4786899
Q gi|254780442|r 302 FEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNET-GADVISSAARQIAET----LRLSAIF 376 (480)
Q Consensus 302 ~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~-~~~aIa~aav~lA~~----l~a~aIi 376 (480)
..|++-.|++++|.+|--+. .....++.++.- ........ ...++ ..=-...+|-+++.. +.-+.+|
T Consensus 114 ~~G~~~~~~~~~~d~~~~~~-----~~~~~e~~~~~g--~kpyvIp~-gG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vV 185 (323)
T COG2515 114 LMGAEVRAVDAGTDIGINAS-----AEELAEEVRKQG--GKPYVIPE-GGSSPLGALGYVRLALEIAEQAEQLLKFDSVV 185 (323)
T ss_pred HCCCEEEEECCCCCHHHCHH-----HHHHHHHHHHCC--CCCCEECC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 24765787158888643310-----678999999617--99837226-77685544128889999999996313777799
Q ss_pred EECCCH-HHHHHHHHHC---CCCCEEEEE
Q ss_conf 970883-7999998418---888699992
Q gi|254780442|r 377 CYTASG-ATGLRAARER---PKLEIIALS 401 (480)
Q Consensus 377 v~T~sG-~tA~~iS~~R---P~~pIiaiT 401 (480)
+.+-|| ..|-++..|- |..+++.+.
T Consensus 186 va~gs~gT~AGl~~g~~~~~~~~~ViG~~ 214 (323)
T COG2515 186 VAPGSGGTHAGLLVGLAQLGPDVEVIGID 214 (323)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 96788510899998765106888468876
No 396
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; InterPro: IPR010123 This entry represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species..
Probab=27.91 E-value=37 Score=13.47 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=48.6
Q ss_pred EECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHC-CCCCHHHHHHH
Q ss_conf 32785663117888753312475222200215876736899999999851398399805767888828-89840347789
Q gi|254780442|r 219 KIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTS-PFPTRAEVSDV 297 (480)
Q Consensus 219 KIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~-p~PTRaEv~Dv 297 (480)
.|.|..+|-. -=+.++|+.- +=++--|+--.|--+.|..-+++.+-. -+++|..... ..|||+|+-.+
T Consensus 238 ~v~s~kaLyd--~Wv~aAe~~Y------~d~~~~e~~~~v~G~liNA~m~lk~~~---q~~~~~~~~~LnlPtRsEl~~~ 306 (332)
T TIGR01834 238 QVKSAKALYD--LWVKAAEEAY------ADVVASEEYAKVHGKLINALMRLKKRQ---QEVVEELLKALNLPTRSELDEA 306 (332)
T ss_pred CHHHHHHHHH--HHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHH
T ss_conf 3248999999--9999861113------653216456789988798999999999---9999999865389976899999
Q ss_pred HHHHHC
Q ss_conf 999851
Q gi|254780442|r 298 ATAVFE 303 (480)
Q Consensus 298 anav~d 303 (480)
..-|.+
T Consensus 307 h~~i~~ 312 (332)
T TIGR01834 307 HQRIQE 312 (332)
T ss_pred HHHHHH
T ss_conf 999999
No 397
>CHL00067 rps2 ribosomal protein S2
Probab=27.90 E-value=29 Score=14.22 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCEEE--EEHHHHHHHHHCCCCCHH
Q ss_conf 999999851398399--805767888828898403
Q gi|254780442|r 260 KKLIRIARQLGKPVV--IATQMLESMVTSPFPTRA 292 (480)
Q Consensus 260 k~ii~~~~~~~kpvi--vATq~leSM~~~p~PTRa 292 (480)
+..++.|+++|.|+| +-|+.=-++++-|.|..-
T Consensus 170 ~~ai~Ea~kL~IPvIaivDTn~~p~~idypIP~ND 204 (227)
T CHL00067 170 YTALRECIKLGIPTISIVDTNCDPDLADIPIPAND 204 (227)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCC
T ss_conf 79999998759998999638999775776753786
No 398
>PRK13112 consensus
Probab=27.88 E-value=37 Score=13.47 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 1178887533124752222002158767368999999998513-983998057678888288984034778999985199
Q gi|254780442|r 227 EYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEA 305 (480)
Q Consensus 227 ~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~ 305 (480)
+.++.|.+.+.|-+-.=+-.|+-=.-..++.--+..+++++++ .+|+.+-.-+ -|+ .| +..+..++
T Consensus 162 eRi~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI---------s~~---e~-~~~~~~~a 228 (279)
T PRK13112 162 KRLPKVLANTSGFVYYVSMTGITGSALADTSAVGEAVARIKRHTDLPVCVGFGV---------KTP---EQ-ARAIAAHA 228 (279)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC---------CCH---HH-HHHHHCCC
T ss_conf 999999852788089983566667664564889999999997178987678356---------999---99-99997259
Q ss_pred CEEEEC
Q ss_conf 689981
Q gi|254780442|r 306 DAIMLS 311 (480)
Q Consensus 306 D~imLs 311 (480)
||+...
T Consensus 229 DGvIVG 234 (279)
T PRK13112 229 DGVVVG 234 (279)
T ss_pred CEEEEC
T ss_conf 999987
No 399
>PRK13127 consensus
Probab=27.87 E-value=37 Score=13.47 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 799999999973997899988888989999999999
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKI 53 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~i 53 (480)
.+.+.+..|.++|+|+.-|-+-+-++-.--.+|+.-
T Consensus 26 ~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a 61 (262)
T PRK13127 26 ATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAA 61 (262)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 999999999976999999789888877657999999
No 400
>PRK07682 hypothetical protein; Validated
Probab=27.75 E-value=37 Score=13.45 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=21.2
Q ss_pred HHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 999999888877887799985222788886415999994
Q gi|254780442|r 434 ACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 434 a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~V 472 (480)
+...+.+.| |.++-|..+|..| .+.+|+-.-
T Consensus 327 ~~~ll~~~~-------V~v~PG~~Fg~~g-~~~iRl~~a 357 (378)
T PRK07682 327 AEQLLLEEK-------VAVVPGSVFGESG-EGFIRCSYA 357 (378)
T ss_pred HHHHHHHCC-------EEEECCHHHCCCC-CCEEEEEEC
T ss_conf 999999699-------9998862228999-897999961
No 401
>KOG4533 consensus
Probab=27.47 E-value=15 Score=16.27 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=10.5
Q ss_pred EEEECCCCCHHCCHHHHHHHHHH
Q ss_conf 47522220021587673689999
Q gi|254780442|r 239 VMVARGDLGVEMALELIPGIQKK 261 (480)
Q Consensus 239 imiaRGDLg~e~~~e~vp~~Qk~ 261 (480)
+...-++.|-.-...-+..+||+
T Consensus 90 v~~~~s~~gE~~s~wfLe~yqk~ 112 (317)
T KOG4533 90 VKKEASAIGEAQSYWFLEEYQKR 112 (317)
T ss_pred EEECCCCCCCCCCHHHHHHHHHC
T ss_conf 65056655644321002456634
No 402
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.43 E-value=37 Score=13.42 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHC-------------CCCCEEEEECCHHHHHHHHHHCCCEEEEEC
Q ss_conf 047868999708837999998418-------------888699992998999876665393799936
Q gi|254780442|r 369 TLRLSAIFCYTASGATGLRAARER-------------PKLEIIALSPMIQTARRLALVWGIHCVVTE 422 (480)
Q Consensus 369 ~l~a~aIiv~T~sG~tA~~iS~~R-------------P~~pIiaiT~~~~t~r~l~L~~GV~p~~~~ 422 (480)
++.-.++++.|.||.|.--++.++ +....+++|.+..-++++.-..+..-+..+
T Consensus 71 ~~~~TlfiviSKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~vaIT~~~s~l~~~a~~~~~~i~~~~ 137 (158)
T cd05015 71 DPETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred CCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCHHHHHHHCCCCCCEEECC
T ss_conf 9301499997599986899999999999999832035566078980596699998575885888899
No 403
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=27.33 E-value=38 Score=13.40 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHHHH-----------HHCC-HHH---HHHHH--------
Q ss_conf 3477899998519---96899814443544658999999998876-----------3010-124---44444--------
Q gi|254780442|r 292 AEVSDVATAVFEE---ADAIMLSAETASGSYPVDAVRTMSLVASS-----------AERD-SSW---LEMRS-------- 345 (480)
Q Consensus 292 aEv~Dvanav~dG---~D~imLs~ETa~G~yP~~~v~~~~~i~~~-----------~E~~-~~~---~~~~~-------- 345 (480)
.|+.-++..+... ++.|-+.|-|-.=--|.+--+.+..|-+. .|+. +.. .....
T Consensus 212 kEI~~~~~~l~~~~~~i~TIY~GGGTPS~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ekL~~lk~~GvnR 291 (497)
T PRK08207 212 YEIEEIGKYLKEKGLKIETIYFGGGTPTSITAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYNVDR 291 (497)
T ss_pred HHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCE
T ss_conf 99999998762379803569979981002999999999999998657689997799978798962999999999759875
Q ss_pred ------------HHCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECCC-----HHHHHHHHHHCCC-CCEEEEEC
Q ss_conf ------------3203878888789999999986104-----78689997088-----3799999841888-86999929
Q gi|254780442|r 346 ------------LRRIEPNETGADVISSAARQIAETL-----RLSAIFCYTAS-----GATGLRAARERPK-LEIIALSP 402 (480)
Q Consensus 346 ------------~~~~~~~~~~~~aIa~aav~lA~~l-----~a~aIiv~T~s-----G~tA~~iS~~RP~-~pIiaiT~ 402 (480)
.+...-.++..+ +..|+++|.+. +.+.|.-+-.- -+|-..+-++.|. .-+.+++-
T Consensus 292 iSiGvQSf~~~~Lk~lGR~Ht~~~--~~~a~~~ar~~GF~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~Pd~iTvhsLai 369 (497)
T PRK08207 292 ISINPQSMNDETLKAIGRHHTVED--IIEKFHLARELGFDNINMDLIIGLPGEGLEEFKHTLEEIEKLMPDSLTVHTLSI 369 (497)
T ss_pred EEEECCCCCHHHHHHHCCCCCHHH--HHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 888353299899998189999999--999999999859984977435379999999999999999813998258766655
Q ss_pred CHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 989998766653937999368799999999999999988887
Q gi|254780442|r 403 MIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFG 444 (480)
Q Consensus 403 ~~~t~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i 444 (480)
.+.+. |...+ ..+..+..++..+|.+.+.+++.+.|+.
T Consensus 370 kr~s~--l~~~~--~~~~l~~~~~~~~m~~~~~~~~~~~g~~ 407 (497)
T PRK08207 370 KRASR--LTENK--EKYKVADREEINAMMEEAEEWAKELGYV 407 (497)
T ss_pred CCCCH--HHHCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 46860--22245--5668998589999999999999977998
No 404
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=27.30 E-value=38 Score=13.40 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=10.9
Q ss_pred ECCCCEEECCCCCCCCCCCCC
Q ss_conf 138808711456446785445
Q gi|254780442|r 147 VIAGISIADRKGISFPDTFLT 167 (480)
Q Consensus 147 V~~gG~l~s~Kgvnip~~~i~ 167 (480)
...||.+.---++|+.+..+-
T Consensus 51 ~~~ggii~~EapIh~SnV~i~ 71 (104)
T COG0198 51 NPEGGIINKEAPIHISNVAII 71 (104)
T ss_pred CCCCCEEEEEECCCHHHEEEE
T ss_conf 878861545623367995896
No 405
>pfam03152 UFD1 Ubiquitin fusion degradation protein UFD1. Post-translational ubiquitin-protein conjugates are recognized for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified. This family includes UFD1, a 40kD protein that is essential for vegetative cell viability. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterized by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145
Probab=27.25 E-value=38 Score=13.39 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHCCCCCEEEEECC--CEEECCCCCCCCEEEEEECCC
Q ss_conf 221133652674068--422102344541124551388
Q gi|254780442|r 115 FASIKIGDRLLIDDG--RVKLCVQEKGIGFIKCKVIAG 150 (480)
Q Consensus 115 ~~~ik~Gd~I~idDG--~i~l~V~~~~~~~i~c~V~~g 150 (480)
+..+..||.|.|..+ ...|.|.+.++....|.+...
T Consensus 131 y~~LT~gd~I~i~y~~~~y~~~V~e~kP~~aI~iietD 168 (176)
T pfam03152 131 FSTLTKGDTIVINYNDKTYEIDILEVKPANAISIIETD 168 (176)
T ss_pred CCCCCCCCEEEEECCCEEEEEEEEEECCCCCEEEEECC
T ss_conf 70021799999966998999999987689800699575
No 406
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=27.07 E-value=38 Score=13.37 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 7999999999999999888877887799985
Q gi|254780442|r 424 ASDSDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 424 ~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
-+.....+-.+++.+.+++.+++||.+++++
T Consensus 319 GNtsSaSip~~L~~~~~~~~~~~Gd~vl~~a 349 (361)
T cd00831 319 GNMSSSSVLYVLAYMEAKGRVKRGDRGLLIA 349 (361)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8539889999999999739999999899999
No 407
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=27.03 E-value=38 Score=13.37 Aligned_cols=18 Identities=11% Similarity=-0.064 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999974992
Q gi|254780442|r 46 MCELIKKIRAVELRSRRP 63 (480)
Q Consensus 46 ~~~~i~~ir~~~~~~~~~ 63 (480)
.++.++..+++...+|+.
T Consensus 57 ~~~kl~ff~~~r~~~GrT 74 (421)
T cd07230 57 DRYLLGMLLQTRKNFGRT 74 (421)
T ss_pred HHHHHHHHHHHHHHHCCE
T ss_conf 799999999999970970
No 408
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.98 E-value=38 Score=13.36 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.5
Q ss_pred ECCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 3687-9999999999999998888778877999852
Q gi|254780442|r 421 TEDA-SDSDDMVNRACRIVVEQGFGKPGDRIIISAG 455 (480)
Q Consensus 421 ~~~~-~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G 455 (480)
++.. +.....+-.+++.+.+.|.+++||+|++..+
T Consensus 328 v~~~GNT~sASiPiaL~~a~~~g~ik~Gd~vll~~~ 363 (378)
T PRK06816 328 LATVGNTGSASIFIMLDELFRSGRLKPGQTILCFVP 363 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 423270799999999999998499999999999962
No 409
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=26.78 E-value=35 Score=13.65 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHCCCCEEEEEECCCCEEEE-EE----CCCCCEEECCCCEEEEECCCC-CCCCCCCCCCCCCCHHHCCCC----CE
Q ss_conf 999997499279999878986788-65----489818965899999953245-564442212664422211336----52
Q gi|254780442|r 54 RAVELRSRRPIGILIDLQGPKFRV-GK----FANSKVDLTEGQIFTLDNKDS-LGSSDRVMLPHPEIFASIKIG----DR 123 (480)
Q Consensus 54 r~~~~~~~~~i~Il~Dl~GpkiR~-g~----~~~~~i~l~~G~~v~l~~~~~-~~~~~~i~i~y~~l~~~ik~G----d~ 123 (480)
+-|+|++.+.+ +|+|.|--|==+ |+ ++-+||++. .-+|+=+++.. ..+++.|-++ ..+++ ||| |.
T Consensus 19 ~lA~KeLard~-VLlDiPqvEg~pqGKALDmyEasPv~gF-D~kvTGtnnYaDTAnSDivViT-aG~pR--KPGMsReDL 93 (308)
T TIGR01763 19 LLAEKELARDV-VLLDIPQVEGVPQGKALDMYEASPVEGF-DVKVTGTNNYADTANSDIVVIT-AGLPR--KPGMSREDL 93 (308)
T ss_pred HHHHHHHCCEE-EEEEECCCCCCCCCCHHHHHHCCCCCCC-CCEEECCCCCHHHCCCCEEEEC-CCCCC--CCCCCHHHH
T ss_conf 99867406716-8985055586888633221102776631-1236257870021188379981-67887--547887899
Q ss_pred EEEECCCEEE---CCCCCCCCEEEEEECC
Q ss_conf 6740684221---0234454112455138
Q gi|254780442|r 124 LLIDDGRVKL---CVQEKGIGFIKCKVIA 149 (480)
Q Consensus 124 I~idDG~i~l---~V~~~~~~~i~c~V~~ 149 (480)
|..+.+-++- ++.+-++|.|...|.|
T Consensus 94 ~s~Na~I~R~v~~~i~~~Spn~iIvvv~N 122 (308)
T TIGR01763 94 VSVNADIVREVTSRIVEYSPNAIIVVVSN 122 (308)
T ss_pred HHHCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 86133468999999973189968999718
No 410
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.76 E-value=29 Score=14.20 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHEEEEECCCCCHHCC--HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH-HHHHHHHHHHHC
Q ss_conf 1178887533124752222002158--7673689999999985139839980576788882889840-347789999851
Q gi|254780442|r 227 EYASEIIQLSDAVMVARGDLGVEMA--LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTR-AEVSDVATAVFE 303 (480)
Q Consensus 227 ~nl~eI~~~sDgimiaRGDLg~e~~--~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTR-aEv~Dvanav~d 303 (480)
-.++|+...||.|++==.|....-| .+.....-+.+.+...+.|+-+|+. .|++|+ |+..|..=.+.-
T Consensus 123 ~t~~e~~~~Ad~Ilv~G~Np~~s~P~~~~~~~~~~r~~~~~~~~~~~~livi---------Dpr~t~ta~~Ad~hl~irP 193 (415)
T cd02761 123 TTLGEVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVV---------DPRKSDTAKLADIHLQIDP 193 (415)
T ss_pred CCHHHHHHCCCEEEEECCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---------CCCCCCHHHHCCEEECCCC
T ss_conf 8857785257889997888679686888778887789998632069979998---------4889804464197743799
Q ss_pred CCCEEEE
Q ss_conf 9968998
Q gi|254780442|r 304 EADAIML 310 (480)
Q Consensus 304 G~D~imL 310 (480)
|+|+.++
T Consensus 194 GtD~~l~ 200 (415)
T cd02761 194 GSDYELL 200 (415)
T ss_pred CCHHHHH
T ss_conf 9979999
No 411
>PRK09165 replicative DNA helicase; Provisional
Probab=26.71 E-value=38 Score=13.33 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH---HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHH--------------HCCCEEE
Q ss_conf 566311788875---331247522220021587673689999999985--------------1398399
Q gi|254780442|r 223 PRAIEYASEIIQ---LSDAVMVARGDLGVEMALELIPGIQKKLIRIAR--------------QLGKPVV 274 (480)
Q Consensus 223 ~~al~nl~eI~~---~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~--------------~~~kpvi 274 (480)
+-|+..||.++. -.|=|+| |.--+.-|..++..-....|+ ..|+||.
T Consensus 189 ~TGf~~LD~~t~G~~~GdLiII-----AARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~ 252 (484)
T PRK09165 189 STGLRDLDSKLGGLHPSDLIIL-----AGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVG 252 (484)
T ss_pred ECCCHHHHHHHCCCCCCCEEEE-----EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 1584459987158887737999-----607999778999999999998741022223321136898489
No 412
>PRK13116 consensus
Probab=26.71 E-value=38 Score=13.33 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHEEEEE---CCCCCHH--CCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1178887533124752---2220021--58767368999999998513-9839980576788882889840347789999
Q gi|254780442|r 227 EYASEIIQLSDAVMVA---RGDLGVE--MALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATA 300 (480)
Q Consensus 227 ~nl~eI~~~sDgimia---RGDLg~e--~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvana 300 (480)
+.+..|.+.|+|-+-. .|==|.+ ...+.+ +..++.++++ ..||.+-.-+ -|+ .|++++
T Consensus 161 ~ri~~I~~~s~GFiY~VS~~GvTG~~~~~~~~~l----~~~i~~ik~~t~~Pv~vGFGI---------s~~---e~v~~~ 224 (278)
T PRK13116 161 KTLEGVSAASKGYIYAISRDGVTGTERESSTDGL----SAVVDNIKKFDGAPILLGFGI---------SSP---QHVADA 224 (278)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH----HHHHHHHHHCCCCCEEEECCC---------CCH---HHHHHH
T ss_conf 9999999718973999863522268866667899----999999984579987998167---------989---999999
Q ss_pred HHCCCCEEEEC
Q ss_conf 85199689981
Q gi|254780442|r 301 VFEEADAIMLS 311 (480)
Q Consensus 301 v~dG~D~imLs 311 (480)
+..++||+...
T Consensus 225 ~~~~aDGVIVG 235 (278)
T PRK13116 225 IAAGASGAITG 235 (278)
T ss_pred HHCCCCEEEEC
T ss_conf 86689999987
No 413
>pfam09347 DUF1989 Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.
Probab=26.66 E-value=39 Score=13.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.1
Q ss_pred HCCCCCEEEEECCCEEECCCCCC
Q ss_conf 11336526740684221023445
Q gi|254780442|r 117 SIKIGDRLLIDDGRVKLCVQEKG 139 (480)
Q Consensus 117 ~ik~Gd~I~idDG~i~l~V~~~~ 139 (480)
.+++|+.++=|.|+..++|++-+
T Consensus 58 ~l~~G~~L~S~~~rpm~tIv~Dt 80 (167)
T pfam09347 58 YLTTGDVLYSNMGRPMLTIVEDT 80 (167)
T ss_pred CCCCCCEEECCCCCEEEEEECCC
T ss_conf 14789886818997689998568
No 414
>PRK10494 hypothetical protein; Provisional
Probab=26.65 E-value=39 Score=13.32 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHCCC--CCEEEEECCCHHH---HHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 99861047--8689997088379---99998418888699992998999876665
Q gi|254780442|r 364 RQIAETLR--LSAIFCYTASGAT---GLRAARERPKLEIIALSPMIQTARRLALV 413 (480)
Q Consensus 364 v~lA~~l~--a~aIiv~T~sG~t---A~~iS~~RP~~pIiaiT~~~~t~r~l~L~ 413 (480)
.+++.+++ ...|+.-++|=+| |..+++.-...+++-+|.--+--|-+.++
T Consensus 143 ~~~~~~lGv~~~~I~~e~~srnT~EnA~~~~~ll~~~~~lLVTSA~HMpRA~~~F 197 (259)
T PRK10494 143 ARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFF 197 (259)
T ss_pred HHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH
T ss_conf 9999983999899152567778899999999984889789983733538999999
No 415
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=26.52 E-value=39 Score=13.30 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=12.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 9978999888889899999999999999
Q gi|254780442|r 30 GTDVFRINMSHTSHDKMCELIKKIRAVE 57 (480)
Q Consensus 30 G~nv~RiN~SHg~~e~~~~~i~~ir~~~ 57 (480)
-|++++|+|=. ...|.++-|+.+|+..
T Consensus 5 e~~~~~LDFE~-Pi~ELe~kI~~l~~~~ 31 (329)
T TIGR00513 5 EMVAVYLDFEK-PIAELEAKIEELRALS 31 (329)
T ss_pred HHCCHHHHCCC-HHHHHHHHHHHHHHHH
T ss_conf 10101310244-2789999999999863
No 416
>pfam10930 DUF2737 Protein of unknown function (DUF2737). This family of proteins has no known function.
Probab=26.49 E-value=35 Score=13.67 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=18.2
Q ss_pred CEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 8399805767888828898403477
Q gi|254780442|r 271 KPVVIATQMLESMVTSPFPTRAEVS 295 (480)
Q Consensus 271 kpvivATq~leSM~~~p~PTRaEv~ 295 (480)
-|-|.-|+|.-+-...|.|||-|.-
T Consensus 7 np~i~~te~iir~~~kpmptREEll 31 (54)
T pfam10930 7 NPGILPTEMIIRHKHKPMPTREELL 31 (54)
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 9761769999986157899899998
No 417
>PRK13117 consensus
Probab=26.45 E-value=39 Score=13.30 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 31178887533124752222002158767368999999998513-98399805767888828898403477899998519
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG 304 (480)
-+.+..|.+.++|.+-.=.-.|+.=.-..++.--+..+++.+++ .+|+.+-.- .-|+ .|+..++..|
T Consensus 160 ~~Ri~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFG---------Is~~---e~v~~~~~~~ 227 (268)
T PRK13117 160 DDTLRQIASLGRGYTYLLSRAGVTGAENKAAAPLNHLVEKLKEYNAPPPLQGFG---------ISEP---EQVKAAIKAG 227 (268)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC---------CCCH---HHHHHHHHCC
T ss_conf 999999997479859998367778898666277999999999647998699837---------8999---9999998638
Q ss_pred CCEEEEC
Q ss_conf 9689981
Q gi|254780442|r 305 ADAIMLS 311 (480)
Q Consensus 305 ~D~imLs 311 (480)
+||+...
T Consensus 228 aDGvIVG 234 (268)
T PRK13117 228 AAGAISG 234 (268)
T ss_pred CCEEEEC
T ss_conf 9989987
No 418
>PRK13131 consensus
Probab=26.44 E-value=39 Score=13.29 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 31178887533124752222002158767368999999998513-98399805767888828898403477899998519
Q gi|254780442|r 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG 304 (480)
-+.+++|.+.|+|-+-.=.-.|+-=.-..++.-.+.++++.+++ .+|+.+---+ -|+ .|+..+...|
T Consensus 153 ~~Ri~~i~~~s~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI---------s~~---e~v~~~~~~g 220 (257)
T PRK13131 153 VKDLEQVATHSQGYIYTLARSGVTGASHTLENDASAIIKTLKTFSPTPALLGFGI---------SKK---EHITNAKGMG 220 (257)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC---------CCH---HHHHHHHHCC
T ss_conf 8999999835897499984576779864340769999999996689987998057---------988---9999998559
Q ss_pred CCEEEEC
Q ss_conf 9689981
Q gi|254780442|r 305 ADAIMLS 311 (480)
Q Consensus 305 ~D~imLs 311 (480)
+||+...
T Consensus 221 aDGvIVG 227 (257)
T PRK13131 221 ADGVICG 227 (257)
T ss_pred CCEEEEC
T ss_conf 9999987
No 419
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=26.30 E-value=24 Score=14.84 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCEEE--EEHHHHHHHHHCCCCCHHH--------HHHHHHHHHCCCCEEEECCC
Q ss_conf 9999999851398399--8057678888288984034--------77899998519968998144
Q gi|254780442|r 259 QKKLIRIARQLGKPVV--IATQMLESMVTSPFPTRAE--------VSDVATAVFEEADAIMLSAE 313 (480)
Q Consensus 259 Qk~ii~~~~~~~kpvi--vATq~leSM~~~p~PTRaE--------v~Dvanav~dG~D~imLs~E 313 (480)
.+..|+.|+++|-||| +-|+-=-+.+.-|+|-.-. ..-+|+|++||-.+-|-+.-
T Consensus 171 E~iAV~EA~kLgIPvIaIvDTN~dP~~IdYpIPgNDDairsI~L~c~lia~A~l~G~~~~~~~~g 235 (332)
T PRK12311 171 EDIAIQEAQRLGIPVAAIVDTNCDPKGITYLVPGNDDAGRAIALYCDLIARAAIDGISRAQGDLG 235 (332)
T ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 38999999980979899973899986577568486558999999999999999999987520026
No 420
>PRK13114 consensus
Probab=26.28 E-value=39 Score=13.27 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHEEEEEC---CCCCHHCCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 311788875331247522---22002158767368999999998513-98399805767888828898403477899998
Q gi|254780442|r 226 IEYASEIIQLSDAVMVAR---GDLGVEMALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAV 301 (480)
Q Consensus 226 l~nl~eI~~~sDgimiaR---GDLg~e~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav 301 (480)
-+.+..|.+.++|-+-.= |==|...+ ++.--+..+++.++. .+|+.+-.-+ -|+ +-+..+
T Consensus 156 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~---~~~~~~~~i~~ik~~t~~Pv~vGFGI---------s~~----e~~~~~ 219 (266)
T PRK13114 156 AARLPAVLEGASGFLYYVSVAGITGMQQA---AQASIEAAVARIKAATDLPVAVGFGV---------RTP----EQAAAI 219 (266)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCC---CHHHHHHHHHHHHHHCCCCEEEECCC---------CCH----HHHHHH
T ss_conf 99999999738995899844556677656---65889999999997079986998366---------989----999999
Q ss_pred HCCCCEEEEC
Q ss_conf 5199689981
Q gi|254780442|r 302 FEEADAIMLS 311 (480)
Q Consensus 302 ~dG~D~imLs 311 (480)
..++||+...
T Consensus 220 ~~~ADGvIVG 229 (266)
T PRK13114 220 ARVADGVVVG 229 (266)
T ss_pred HHCCCEEEEC
T ss_conf 8009999981
No 421
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=26.20 E-value=20 Score=15.45 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=19.1
Q ss_pred HHHHHHHHCCC-CCEEEEECCCHHHHH
Q ss_conf 99999861047-868999708837999
Q gi|254780442|r 361 SAARQIAETLR-LSAIFCYTASGATGL 386 (480)
Q Consensus 361 ~aav~lA~~l~-a~aIiv~T~sG~tA~ 386 (480)
.+++++|-.++ |++|+=.|+||.|-+
T Consensus 133 ~GsvElAP~~GlAD~IvDiveTG~TLk 159 (204)
T PRK13584 133 NGSVELACVVDMVDGIVDIVQTGTTLK 159 (204)
T ss_pred EEEEEECCCCCCCCEEEEEECCCHHHH
T ss_conf 536853678887558999837758899
No 422
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.17 E-value=39 Score=13.26 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHH--CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 53312475222200215876736899999999851--3983998057678888288984034778999985199689981
Q gi|254780442|r 234 QLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQ--LGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 234 ~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~--~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
..+|+|||=...+..--..+.+... +...++ -.+++.|-.+-|+ ++-.|+.-|+|-|||-
T Consensus 155 gLsD~vLIKdNH~~~~~~~~~~~~a----i~~~r~~~p~~kIeVEv~tl~--------------~~~ea~~~gaD~IlLD 216 (284)
T PRK06096 155 GCAETILLFANHRHFLHDNQDWSGA----INQLRRHAPEKKIVVEADTPK--------------EAIAALRAQPDVLQLD 216 (284)
T ss_pred CCCCEEEEECCHHHHHHCCHHHHHH----HHHHHHHCCCCCEEEEECCHH--------------HHHHHHHCCCCEEEEC
T ss_conf 8763588700249887253579999----999997589998899809999--------------9999985799999968
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 44435446589999999988
Q gi|254780442|r 312 AETASGSYPVDAVRTMSLVA 331 (480)
Q Consensus 312 ~ETa~G~yP~~~v~~~~~i~ 331 (480)
|++.+-++-..+++
T Consensus 217 ------nmsp~~l~~av~~~ 230 (284)
T PRK06096 217 ------KFSPQQATEIAQIA 230 (284)
T ss_pred ------CCCHHHHHHHHHHH
T ss_conf ------98999999999998
No 423
>pfam04437 RINT1_TIP1 RINT-1 / TIP-1 family. This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control, as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport.
Probab=26.08 E-value=26 Score=14.59 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=15.8
Q ss_pred EEEEECCHHHHHHHHHHHHHHHEEEEE
Q ss_conf 555327856631178887533124752
Q gi|254780442|r 216 LMSKIEKPRAIEYASEIIQLSDAVMVA 242 (480)
Q Consensus 216 IiaKIE~~~al~nl~eI~~~sDgimia 242 (480)
.+..+|.+-|++.+++|++..|+=-|+
T Consensus 135 ~Wl~~E~~~A~~r~~~ii~s~daw~i~ 161 (485)
T pfam04437 135 KWLKIEKEFALDKLEAILEAEDAWEIQ 161 (485)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999999986594257756
No 424
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=26.06 E-value=39 Score=13.25 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=11.5
Q ss_pred CCCCEEECCCCCCCCCCCCC
Q ss_conf 38808711456446785445
Q gi|254780442|r 148 IAGISIADRKGISFPDTFLT 167 (480)
Q Consensus 148 ~~gG~l~s~Kgvnip~~~i~ 167 (480)
..||.+..-.++|+.+..+-
T Consensus 53 ~~Ggi~~~E~pIh~SNV~lv 72 (102)
T PRK00004 53 PQGGIVEKEAPIHISNVALF 72 (102)
T ss_pred CCCCEEEEECCEEEHHEEEE
T ss_conf 78838999888990148898
No 425
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.03 E-value=40 Score=13.24 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 7999999999739978999888889899
Q gi|254780442|r 18 FSEDVINRLHEEGTDVFRINMSHTSHDK 45 (480)
Q Consensus 18 ~~~e~i~~l~~aG~nv~RiN~SHg~~e~ 45 (480)
.+++.++...++|+|..=++|...|+-.
T Consensus 9 t~~eda~~a~~~gaD~iGfif~~~SpR~ 36 (207)
T PRK13958 9 TSIKDVTAASQLPIDAIGFIHYEKSKRH 36 (207)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 9799999999689999999557899986
No 426
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.96 E-value=40 Score=13.23 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCEEEEECCCHHHHHH---H--HHHCCCCCEEEEECCHH
Q ss_conf 78689997088379999---9--84188886999929989
Q gi|254780442|r 371 RLSAIFCYTASGATGLR---A--ARERPKLEIIALSPMIQ 405 (480)
Q Consensus 371 ~a~aIiv~T~sG~tA~~---i--S~~RP~~pIiaiT~~~~ 405 (480)
+-+.++++|.||++... + +|.+ .+|++++|.+..
T Consensus 60 ~~d~~i~iS~sg~~~~~~~~~~~ak~~-g~~ii~IT~~~~ 98 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKER-GAKVIAITDSAN 98 (139)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf 999999976863637899999999986-997999979999
No 427
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=25.93 E-value=40 Score=13.23 Aligned_cols=227 Identities=17% Similarity=0.198 Sum_probs=104.8
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCE---------EEC-
Q ss_conf 9999999997399789998888898999999999999999749927999987898678865489818---------965-
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKV---------DLT- 88 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i---------~l~- 88 (480)
..+.|+.=.+.|--|.=+|+. +.|+.+..+ +++++.+.|+ |+.=.+|.- .+.+... .+-
T Consensus 12 ~k~lL~~A~~~~yAV~AfNv~--~~e~~~Avi----~AAee~~sPv-Ilq~s~g~~----~~~~~~~l~~~~~~~~~~a~ 80 (321)
T PRK07084 12 TRELFAKAVKGGYAIPAYNFN--NLEQLQAII----MACVETKSPV-ILQVSKGAR----SYANATLLRYMAQGAVEYAK 80 (321)
T ss_pred HHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEEECCCHH----HHCCHHHHHHHHHHHHHHHH
T ss_conf 999999999889379987779--999999999----9999979998-999274877----65883789999999999999
Q ss_pred ---CCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEEC
Q ss_conf ---899999953245564442212664422211336-5267406842210--------234-454112455138808711
Q gi|254780442|r 89 ---EGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIAD 155 (480)
Q Consensus 89 ---~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s 155 (480)
..=-|-+..|.. -++..+-+.++.| +.|.+|-..+.|+ |.+ .+.-.+..+.+-|..-+.
T Consensus 81 ~~~~~VPV~lHLDHg--------~~~e~i~~ai~~GFtSVM~DgS~lp~eeNI~~Tk~vv~~Ah~~gv~VEaElG~igG~ 152 (321)
T PRK07084 81 ELGSPIPIVLHLDHG--------DSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGI 152 (321)
T ss_pred HHCCCCCEEEECCCC--------CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 858997789989999--------999999999980998799639979999999999999999726399699975034675
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 45644678544555676556778998873488532505855773479999986200343355532785663117888753
Q gi|254780442|r 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQL 235 (480)
Q Consensus 156 ~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~ 235 (480)
..++.-.. ..+|+-+ +..+|. +..++|++|+||=...-.-+ .+ .- .-+-+.-++-|.+|-+.
T Consensus 153 ed~~~~~~-----~~yT~Pe-ea~~Fv-~~TgvD~LAvaiGt~HG~Yk-~~------~~----~~~p~L~~d~L~~I~~~ 214 (321)
T PRK07084 153 EDEVSAEH-----HTYTQPE-EVEDFV-TKTGVDSLAISIGTSHGAFK-FK------PG----ECPPPLRFDILAEIEKR 214 (321)
T ss_pred CCCCCCCC-----HHCCCHH-HHHHHH-HHHCCCEEEEECCHHCCCCC-CC------CC----CCCCCCCHHHHHHHHHH
T ss_conf 66766640-----2059999-999999-98699858642010036766-78------88----88744369999999985
Q ss_pred H-HEEEEECCCCCHHCCHHHHH-------------HHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 3-12475222200215876736-------------89999999985139-83998057678888
Q gi|254780442|r 236 S-DAVMVARGDLGVEMALELIP-------------GIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 236 s-DgimiaRGDLg~e~~~e~vp-------------~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
. |-=+|--| |-.+|.+.+. .+...-|++|.++| ..|=+.|.+--.+.
T Consensus 215 v~~vPLVLHG--gS~~p~~~v~~~~~~Gg~~~~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a~~ 276 (321)
T PRK07084 215 IPGFPIVLHG--ASSVPQELVETINQHGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMT 276 (321)
T ss_pred CCCCCEEEEC--CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHH
T ss_conf 7799868528--9988278877787528855567899999999999869769981807899999
No 428
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.91 E-value=40 Score=13.23 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 999999851398399
Q gi|254780442|r 260 KKLIRIARQLGKPVV 274 (480)
Q Consensus 260 k~ii~~~~~~~kpvi 274 (480)
++|.+.|..+|.|+.
T Consensus 269 ~~ia~~A~~~gi~~~ 283 (354)
T cd03317 269 LKIHDLCQEHGIPVW 283 (354)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999998399788
No 429
>KOG1068 consensus
Probab=25.86 E-value=39 Score=13.28 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=12.2
Q ss_pred CCCCCCCEEEEEC-CCCC
Q ss_conf 9777752699941-8775
Q gi|254780442|r 1 MVNLRRIKIISTL-GPSS 17 (480)
Q Consensus 1 ~~~mrktKIi~Tl-GPas 17 (480)
.|++.+||++|++ ||..
T Consensus 41 y~E~GnTKVl~aV~GPre 58 (245)
T KOG1068 41 YMEQGNTKVLCAVYGPRE 58 (245)
T ss_pred HHHCCCEEEEEEEECCCC
T ss_conf 002488079999848844
No 430
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=25.79 E-value=40 Score=13.21 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=29.1
Q ss_pred CEEEEECCHHHHHH----HHHHCCCEEE--EECCCCCHHHHHHHH---HHHHHHCCCCCCCCEEEEE
Q ss_conf 69999299899987----6665393799--936879999999999---9999988887788779998
Q gi|254780442|r 396 EIIALSPMIQTARR----LALVWGIHCV--VTEDASDSDDMVNRA---CRIVVEQGFGKPGDRIIIS 453 (480)
Q Consensus 396 pIiaiT~~~~t~r~----l~L~~GV~p~--~~~~~~~~~~~i~~a---~~~l~~~g~i~~GD~VVvv 453 (480)
.-+.+|++.+..|. |...+|+.-- ...+.-+.++.+... ++.+.+.|++.-.+..+.+
T Consensus 359 rg~~Ls~eD~lr~~vi~~Lmc~~~ld~~~~~~~~g~~~~~~f~~~~~~L~~l~~~GLl~~~~~~l~l 425 (456)
T PRK09249 359 RGVALTADDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELELLAPLEDDGLVELDEDGITV 425 (456)
T ss_pred HCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf 3020889999999999999984893889999996989999999999999999979989998999999
No 431
>pfam06371 Drf_GBD Diaphanous GTPase-binding Domain. This domain is bound to by GTP-attached Rho proteins, leading to activation of the Drf protein.
Probab=25.79 E-value=40 Score=13.21 Aligned_cols=106 Identities=28% Similarity=0.360 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHC
Q ss_conf 76556778998873488532505855773479999986200343355532785663117888753312475222200215
Q gi|254780442|r 171 LTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEM 250 (480)
Q Consensus 171 ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~ 250 (480)
++.+..+.+..++....++|| -+|+. .+-+..+-++|.... ..+..+...++.--+++++--++|=- ..
T Consensus 80 ~~~~~L~sL~vsLrt~~isWV-~~Fl~-~~G~~~L~~~L~~~~---~~~~~~~~~~~~~~~~l~CLkaimN~------~~ 148 (187)
T pfam06371 80 IDQKCLESLRVALRTNPVSWV-TRFIG-AEGLSALLNILSKIV---NKKSESDEDLDREYEILKCLKALMNN------KF 148 (187)
T ss_pred CHHHHHHHHHHHHHCCCCHHH-HHHHC-CCCHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHCC------HH
T ss_conf 129999999999823971499-99872-467999999999988---87603634888999999999999665------88
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 876736899999999851398399805767888828898403477899998
Q gi|254780442|r 251 ALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAV 301 (480)
Q Consensus 251 ~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav 301 (480)
|++.+..- |-. -+.+-.|+.....+||..+.++-.|+
T Consensus 149 G~~~v~~~-------------~~~-i~~i~~sL~s~~~~t~~~~~elL~~l 185 (187)
T pfam06371 149 GIDHVLGH-------------PEV-ILLLARSLDSPRPKTRKLALELLTAL 185 (187)
T ss_pred HHHHHHHC-------------HHH-HHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999818-------------079-99999996899742999999999998
No 432
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=25.74 E-value=40 Score=13.21 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 98403477899998519
Q gi|254780442|r 288 FPTRAEVSDVATAVFEE 304 (480)
Q Consensus 288 ~PTRaEv~Dvanav~dG 304 (480)
..++.+.--+-+++.||
T Consensus 224 LR~~~dr~aL~~~l~~G 240 (361)
T cd01318 224 LRSREDRKALLQALADG 240 (361)
T ss_pred CCCHHHHHHHHHHHHCC
T ss_conf 89778999999998659
No 433
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.73 E-value=40 Score=13.20 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCC--------CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9999999973997899988888--------98999999999999999749927999987898
Q gi|254780442|r 20 EDVINRLHEEGTDVFRINMSHT--------SHDKMCELIKKIRAVELRSRRPIGILIDLQGP 73 (480)
Q Consensus 20 ~e~i~~l~~aG~nv~RiN~SHg--------~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~Gp 73 (480)
.+..++|++.|+++.=|..--+ ..||+..+..-++.+..+.+ +.|-+|+-=|
T Consensus 27 ~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~~eE~~Rl~pvl~~i~~~~~--v~iSIDT~~~ 86 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD--VPISVDTFNA 86 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--CEEEEECCCH
T ss_conf 99999999879999997987789999747778888885005688742799--6099979888
No 434
>PRK08760 replicative DNA helicase; Provisional
Probab=25.68 E-value=40 Score=13.20 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHEEEEECCCC---CHHCCHHHHHHHHHHHHHHHHHCCCEEEE-E-----HHHHHHHHH
Q ss_conf 8566311788875331247522220---02158767368999999998513983998-0-----576788882
Q gi|254780442|r 222 KPRAIEYASEIIQLSDAVMVARGDL---GVEMALELIPGIQKKLIRIARQLGKPVVI-A-----TQMLESMVT 285 (480)
Q Consensus 222 ~~~al~nl~eI~~~sDgimiaRGDL---g~e~~~e~vp~~Qk~ii~~~~~~~kpviv-A-----Tq~leSM~~ 285 (480)
-+-|+..||.++. | +.+||| |.--+.-|--+++.-....|.+.++||.. . .|+.+-|+.
T Consensus 212 i~TG~~~LD~~t~---G--l~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls 279 (476)
T PRK08760 212 LPTGYNDFDAMTA---G--LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLIS 279 (476)
T ss_pred CCCCCHHHHHHHC---C--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 6779688997446---9--987777999877887478999999999998379978997036999999999999
No 435
>PRK08526 threonine dehydratase; Provisional
Probab=25.64 E-value=40 Score=13.19 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=18.2
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCC
Q ss_conf 33555327856631178887533124752222002158
Q gi|254780442|r 214 IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMA 251 (480)
Q Consensus 214 ~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~ 251 (480)
..+||=--| -|+|=+++. ...|.|++.=|-=|.=-+
T Consensus 149 ~~vIaGqGT-iglEileq~-~d~D~vvvpvGGGGLisG 184 (403)
T PRK08526 149 EEVMAGQGT-IALEMLDEI-SDLDMIVVPVGGGGLISG 184 (403)
T ss_pred HHHHCCCCC-HHHHHHHHC-CCCCEEEECCCCCCHHHH
T ss_conf 657625323-899999755-689989985888616899
No 436
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=25.62 E-value=40 Score=13.19 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECC---------CHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999861047868999708---------83799999841888869999
Q gi|254780442|r 359 ISSAARQIAETLRLSAIFCYTA---------SGATGLRAARERPKLEIIAL 400 (480)
Q Consensus 359 Ia~aav~lA~~l~a~aIiv~T~---------sG~tA~~iS~~RP~~pIiai 400 (480)
++.+.++.|.+.+++.||+-++ -|.++..+-++= +||++.+
T Consensus 82 ~~~~I~~~a~e~~~DlIVmG~~g~~~~~~~~lGSv~~~V~~~a-~cpVlvV 131 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESA-PCDVAVV 131 (132)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHCC-CCCEEEE
T ss_conf 7999999999849999998379998754244475799998459-9988996
No 437
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=25.61 E-value=40 Score=13.19 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCCE---EEEECCHHHHH----HHHHHCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCC-CEEEEE
Q ss_conf 9999841888869---99929989998----76665393799936--8799999999999999988887788-779998
Q gi|254780442|r 385 GLRAARERPKLEI---IALSPMIQTAR----RLALVWGIHCVVTE--DASDSDDMVNRACRIVVEQGFGKPG-DRIIIS 453 (480)
Q Consensus 385 A~~iS~~RP~~pI---iaiT~~~~t~r----~l~L~~GV~p~~~~--~~~~~~~~i~~a~~~l~~~g~i~~G-D~VVvv 453 (480)
..++.+.....|+ -.+++.....+ .|.+.+|+.--.+. +-.+.++ +...++.+.+.|++... +.+.+|
T Consensus 300 ~~Y~~~~~~g~~~~~~~~l~~~d~~~e~i~~~LRl~~Gv~~~~f~~~~g~~l~~-~~~~l~~l~~~GLl~~~~~~i~lT 377 (393)
T PRK08898 300 ATYLEQAKAGTAVQEEREVGARDLPFEFMLNALRLTDGVPASSFQERTGLPLAA-IEPQLAAAEQRGLLERDPTRIRPT 377 (393)
T ss_pred HHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH-HHHHHHHHHHCCCEEEECCEEEEC
T ss_conf 999999866998431127899999999999989861898899999998969999-999999999789899809999999
No 438
>PRK13138 consensus
Probab=25.58 E-value=40 Score=13.19 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 178887533124752222002158767368999999998513-9839980576788882889840347789999851996
Q gi|254780442|r 228 YASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEAD 306 (480)
Q Consensus 228 nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D 306 (480)
.+..|.+.|+|-+-+=.-.|+-=.-..++.--+..++++++. ..|+.+-.-+ -|+ +-+..+..++|
T Consensus 160 Ri~~i~~~s~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI---------s~~----e~~~~~~~~AD 226 (264)
T PRK13138 160 RIQSMKSFASGFIYYVTSYGVTGERGAIASGLEDRIQMVRKIVGLPVCAGFGI---------STA----DQAKEISTYAD 226 (264)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC---------CCH----HHHHHHHHCCC
T ss_conf 99999973888089875456678765553769999999997438983886067---------989----99999983499
Q ss_pred EEEEC
Q ss_conf 89981
Q gi|254780442|r 307 AIMLS 311 (480)
Q Consensus 307 ~imLs 311 (480)
|+...
T Consensus 227 GvIVG 231 (264)
T PRK13138 227 GVIIG 231 (264)
T ss_pred EEEEC
T ss_conf 99981
No 439
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=25.56 E-value=40 Score=13.18 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=44.2
Q ss_pred CCEEECCCCEEEEECCCCCC--CCCCCCCCCCCCHHHCCCCCEEEEE-CCCEEECCCCCCC--CEEEEEECCCC
Q ss_conf 81896589999995324556--4442212664422211336526740-6842210234454--11245513880
Q gi|254780442|r 83 SKVDLTEGQIFTLDNKDSLG--SSDRVMLPHPEIFASIKIGDRLLID-DGRVKLCVQEKGI--GFIKCKVIAGI 151 (480)
Q Consensus 83 ~~i~l~~G~~v~l~~~~~~~--~~~~i~i~y~~l~~~ik~Gd~I~id-DG~i~l~V~~~~~--~~i~c~V~~gG 151 (480)
.++.+++|+-++|....-.| .....|++. -+..+....++.++ +|.+.|.-+..++ +.-.|-+...+
T Consensus 11 ~pv~V~EG~~~~L~C~PP~g~P~p~i~Wm~~--~~~~i~~d~Rvt~~~~GnLyFsnV~~~D~~~dY~C~A~~p~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNS--DLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CCEEEECCCCEEEECCCCCCCCCCEEEEECC--CCEECCCCCEEEECCCCCEEEEEEEECCCCCCEEEEEECCC
T ss_conf 5138845988698568999999988998679--84383356507877899889886632567898689842763
No 440
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=25.50 E-value=17 Score=16.03 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=58.6
Q ss_pred CCCEE-------CCCCCCC-CHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHHHHHHHHEEEEE----------CCCCC
Q ss_conf 85325-------0585577-34799999862003433555-327856631178887533124752----------22200
Q gi|254780442|r 187 EVDWV-------ALSFIQS-ADDLLEIRKIISQNKIGLMS-KIEKPRAIEYASEIIQLSDAVMVA----------RGDLG 247 (480)
Q Consensus 187 ~vD~i-------alSfVr~-~~di~~~r~~l~~~~~~Iia-KIE~~~al~nl~eI~~~sDgimia----------RGDLg 247 (480)
++|.+ +.-+|.+ ..+=..+|+|+++-.+++|+ -+-+.+.=-||= =.-+=||+|. |+=||
T Consensus 156 G~DLLvIqgT~vSaehv~~e~~E~LnLk~fi~eLDvPVv~Ggv~~Y~~ALhLM--RtGAagvlVGfgG~ga~~T~~~vLG 233 (376)
T TIGR01304 156 GADLLVIQGTVVSAEHVSSESGEPLNLKKFIQELDVPVVAGGVVTYTTALHLM--RTGAAGVLVGFGGPGAATTTREVLG 233 (376)
T ss_pred CCCEEEEHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH--HHCCEEEEECCCCCCCCCCCCCCCE
T ss_conf 73004200123201004688887214888975489887883853088999986--3011378864578873424665342
Q ss_pred HHCCH----HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 21587----67368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 248 VEMAL----ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 248 ~e~~~----e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
+++|. .++--+-+.-++..==-=-|||--..+-.| .|+.-||-.|||+|||.
T Consensus 234 ~~VpmATAiAD~AAARrDYLdEtGGRYVHviADG~i~~s------------Gd~~KAIACGADAV~lG 289 (376)
T TIGR01304 234 IEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETS------------GDLAKAIACGADAVVLG 289 (376)
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC------------CCHHHHEECCCCHHHHC
T ss_conf 106726789999973011333068933778862870554------------63001001377602007
No 441
>KOG2212 consensus
Probab=25.45 E-value=40 Score=13.17 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=41.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf 799999841888869999299899-9876665393799936879999999999999998888778877999852227888
Q gi|254780442|r 383 ATGLRAARERPKLEIIALSPMIQT-ARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTP 461 (480)
Q Consensus 383 ~tA~~iS~~RP~~pIiaiT~~~~t-~r~l~L~~GV~p~~~~~~~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~ 461 (480)
+..+-+.+||-.+.--+++.=-.- .+|.+..||=..++.-..++.+ .......+ +..|+.-=+++|...+.
T Consensus 397 rqI~~Mv~FrnAV~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d------~s~~l~T~-LPAGtYCDviSG~~~~g- 468 (504)
T KOG2212 397 RQIRNMVNFRNAVDGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWD------FSLTLQTG-LPAGTYCDVISGDKING- 468 (504)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCEEEEECCCHH------HHHHHHCC-CCCCCEECEECCCCCCC-
T ss_conf 99999986764426852222362698578786188636988366335------77887527-98776002221565588-
Q ss_pred CCCCEEEEEEECHHHC
Q ss_conf 8641599999450411
Q gi|254780442|r 462 GSTNMLRIAYIGADGL 477 (480)
Q Consensus 462 G~TN~irv~~Vg~~~~ 477 (480)
. -+=+-++|++||-
T Consensus 469 -~-CtG~~iTV~~dg~ 482 (504)
T KOG2212 469 -N-CTGIKITVSDDGK 482 (504)
T ss_pred -C-EEEEEEEECCCCC
T ss_conf -2-1312899757982
No 442
>TIGR00004 TIGR00004 endoribonuclease L-PSP, putative; InterPro: IPR006056 This family includes proteins encoded by the yabJ gene from Bacillus subtilis that is required for adenine-mediated repression of purine biosynthetic genes in vivo and codes for an acid-soluble, 14-kDa protein. The structure of this protein has been solved and the protein is found to form a homotrimer. The trimer has a deep cleft that is a probably ligand binding site and possibly forms an enzymatic active site. However the ligand and reaction are unknown..
Probab=25.41 E-value=29 Score=14.21 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 8566311788875331
Q gi|254780442|r 222 KPRAIEYASEIIQLSD 237 (480)
Q Consensus 222 ~~~al~nl~eI~~~sD 237 (480)
+.+-++||+.||++|.
T Consensus 51 a~Qvl~NlkAiL~aAG 66 (129)
T TIGR00004 51 AEQVLENLKAILEAAG 66 (129)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9899998999999827
No 443
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=25.41 E-value=41 Score=13.16 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCEEEEECCCHHHHHH-----HHHHCCCCCEEEEECCH
Q ss_conf 78689997088379999-----98418888699992998
Q gi|254780442|r 371 RLSAIFCYTASGATGLR-----AARERPKLEIIALSPMI 404 (480)
Q Consensus 371 ~a~aIiv~T~sG~tA~~-----iS~~RP~~pIiaiT~~~ 404 (480)
.-+.+|+++.||+|... .++-| .+|++++|.+.
T Consensus 53 ~~d~vi~iS~sG~t~~~~~~~~~a~~~-g~~~i~iT~~~ 90 (131)
T pfam01380 53 PDDLVIAISQSGETRDLLEAAKLLKAR-GAKIIAITDSK 90 (131)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 999999954898657689878999984-99699998999
No 444
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=25.24 E-value=41 Score=13.14 Aligned_cols=301 Identities=17% Similarity=0.249 Sum_probs=124.3
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEECCCCEEE
Q ss_conf 9999999997399789998888898----999999999999999749927999987898678865489818965899999
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSH----DKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFT 94 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~----e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~v~ 94 (480)
+..+|+.|++.|..| +=+||-.+ ++...+-.-.+.+.+-.+++|...-|.-|++.|-. --+|+.|+.+-
T Consensus 41 ~lpTIk~l~~~ga~V--vl~SHlGRPk~~~~~~SL~pva~~Ls~ll~~~V~f~~d~~g~~a~~~-----v~~l~~GevlL 113 (395)
T COG0126 41 ALPTIKYLLEKGAKV--VLLSHLGRPKEYSDKTSLEPVAKRLSELLGKEVKFVDDCVGPEARQA-----VAELKDGEVLL 113 (395)
T ss_pred HHHHHHHHHHCCCEE--EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHH-----HHCCCCCCEEE
T ss_conf 168999999589959--99824789899987644799999999862996185444468799999-----96168986799
Q ss_pred EECCCCCCCCC-CCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCC--CCCCCCCCCCCC
Q ss_conf 95324556444-221266442221133652674068422102344541124551388087114564--467854455567
Q gi|254780442|r 95 LDNKDSLGSSD-RVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGI--SFPDTFLTTQAL 171 (480)
Q Consensus 95 l~~~~~~~~~~-~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgv--nip~~~i~l~~l 171 (480)
|-+-..+..+. .=.-+.+.|.+.+-+---+|++|..-.. ...+ .|.-|+ .+| --.-.|
T Consensus 114 LEN~RF~~~E~~~d~~~~~~l~k~la~l~DvfVnDAFgtA--HRah--------------aS~~g~~~~lp---s~aG~L 174 (395)
T COG0126 114 LENVRFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTA--HRAH--------------ASTVGFAKFLP---SAAGFL 174 (395)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECHHHHH--HHHC--------------CCHHHHHHHCH---HHHHHH
T ss_conf 8633315655686255689999999864698874245777--7625--------------43124666442---545188
Q ss_pred CHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCC------
Q ss_conf 65567789988734885325058557734799999862003433555327856631178887533124752222------
Q gi|254780442|r 172 TQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGD------ 245 (480)
Q Consensus 172 tekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGD------ 245 (480)
=|+..+.+.-++++..-.++++ ++ =||+.++-++ ++.+++.+|-++|.=|=
T Consensus 175 mekEl~~L~k~l~~p~rP~vaI---------------lG------GaKVsdki~v--ienLl~kaD~liigGgma~tFl~ 231 (395)
T COG0126 175 MEKELDALGKALENPERPFVAI---------------LG------GAKVSDKIGV--IENLLKKADKLIIGGGMANTFLK 231 (395)
T ss_pred HHHHHHHHHHHHCCCCCCEEEE---------------EE------CCCCCHHHHH--HHHHHHHCCEEEECCHHHHHHHH
T ss_conf 9999999999863999865999---------------60------6500008999--99999751758865268999999
Q ss_pred -CCHHCCHH----HHHHHHHHHHHHHHH-CCCEE--EEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf -00215876----736899999999851-39839--98057678888288984034778999985199689981444354
Q gi|254780442|r 246 -LGVEMALE----LIPGIQKKLIRIARQ-LGKPV--VIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASG 317 (480)
Q Consensus 246 -Lg~e~~~e----~vp~~Qk~ii~~~~~-~~kpv--ivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G 317 (480)
.|.+++-. ..-..-|+|+.+|.. .--|+ .+|.+.- --++..++. .|.++ ..-|- +|
T Consensus 232 A~G~~vG~sl~E~~~~~~Ak~ll~k~~~~I~lPvD~~v~~~f~---------~~~~~~~~~-~i~~~--~~~lD----IG 295 (395)
T COG0126 232 AQGYDVGKSLVEFDLIDGAKELLEKAKDKIVLPVDVVVAKEFS---------RDAPATVKL-EIPDD--LMILD----IG 295 (395)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEECCCCC---------CCCCCCCCC-CCCCC--CCCCC----CC
T ss_conf 8366501678889888899999997178177762058705666---------666543346-78887--61315----68
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC
Q ss_conf 46589999999988763010124444443203878888789999999986104786899970883799999841888
Q gi|254780442|r 318 SYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPK 394 (480)
Q Consensus 318 ~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~tA~~iS~~RP~ 394 (480)
-++++..++++..+.- ..|.-.-...+...-...+..++.++.+. -++-.|+ --|.|+.-+.++--.
T Consensus 296 ---p~Ti~~~~~~i~~Akt-ivwNGP~GVfE~~~Fa~GT~~v~~aia~~---~~a~Sii---GGGdt~aAi~~~G~~ 362 (395)
T COG0126 296 ---PKTIELFAEIIKGAKT-IVWNGPMGVFEFENFAKGTEEVAKAIAKS---SGAFSII---GGGDTAAAIDKLGLA 362 (395)
T ss_pred ---HHHHHHHHHHHHHCCE-EEEECCCCCEECCHHHHHHHHHHHHHHHC---CCCEEEE---CCCHHHHHHHHCCCC
T ss_conf ---8999999999845889-99828963112540545699999999844---7975997---883799999973964
No 445
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=25.22 E-value=41 Score=13.14 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=9.4
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 88877887799985
Q gi|254780442|r 441 QGFGKPGDRIIISA 454 (480)
Q Consensus 441 ~g~i~~GD~VVvv~ 454 (480)
.|+...||....-.
T Consensus 491 ~G~~~tGD~~~~De 504 (649)
T PTZ00237 491 PGYYNSGDLGFKDE 504 (649)
T ss_pred CCEEECCCEEEECC
T ss_conf 86687895899938
No 446
>PRK08840 replicative DNA helicase; Provisional
Probab=25.06 E-value=41 Score=13.12 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHH---HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8566311788875---33124752222002158767368999999998513983998
Q gi|254780442|r 222 KPRAIEYASEIIQ---LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 222 ~~~al~nl~eI~~---~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
-+-|+..||+++. ..+-+.| |.--+.-|--+++......|.+.|+||..
T Consensus 200 i~TG~~~LD~~~~Gl~~G~Livi-----aaRPsmGKTalalnia~n~a~~~~~~v~~ 251 (464)
T PRK08840 200 VSTGFTDLNKKTAGLQGSDLIIV-----AARPSMGKTTFAMNLCENAAMDQDKPVLI 251 (464)
T ss_pred CCCCHHHHHHHCCCCCCCCEEEE-----EECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88898999875369875767999-----83798736899999999999965996799
No 447
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=25.05 E-value=40 Score=13.22 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=18.1
Q ss_pred HHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 9998888778877999852227888864159999
Q gi|254780442|r 437 IVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIA 470 (480)
Q Consensus 437 ~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~ 470 (480)
-++.-|-.-. |.||||. .+|.|||+=+|
T Consensus 208 nARamGEFGA---VsVVSG~---IrG~TnTLPL~ 235 (275)
T TIGR02140 208 NARAMGEFGA---VSVVSGH---IRGKTNTLPLH 235 (275)
T ss_pred CCHHHCCCCC---EEEEECC---CCCCCCCCHHH
T ss_conf 1302002112---5688526---89998763243
No 448
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=24.97 E-value=41 Score=13.11 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=11.8
Q ss_pred HHHHHHHHCC-CEEEEEHHHHHHH
Q ss_conf 9999985139-8399805767888
Q gi|254780442|r 261 KLIRIARQLG-KPVVIATQMLESM 283 (480)
Q Consensus 261 ~ii~~~~~~~-kpvivATq~leSM 283 (480)
.+...|+.++ |-||++-+++|-.
T Consensus 293 ~~~~~~~~a~i~~i~ts~~f~~k~ 316 (719)
T PRK08043 293 GLTSAITAAEIKTIFTSRQFLDKG 316 (719)
T ss_pred HHHHHHHHCCCCEEEEHHHHHHHH
T ss_conf 999999980999998769999862
No 449
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.93 E-value=3.9 Score=20.68 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=13.9
Q ss_pred EECCCEEECCCC--CCCCEEEEEECCCCEEECCCC
Q ss_conf 406842210234--454112455138808711456
Q gi|254780442|r 126 IDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKG 158 (480)
Q Consensus 126 idDG~i~l~V~~--~~~~~i~c~V~~gG~l~s~Kg 158 (480)
+.||...+++.- .+++.+... .-...+..=|-
T Consensus 182 ~pdG~Yti~ata~da~G~~~tt~-~g~ypve~v~f 215 (259)
T PRK12812 182 AGDGEYTIKAVYNNKNGEKITAN-YGTYPVEAVKF 215 (259)
T ss_pred CCCCCEEEEEEEECCCCCEEEEE-CCCEEEEEEEE
T ss_conf 99984699999988999787650-26466678998
No 450
>KOG0243 consensus
Probab=24.75 E-value=42 Score=13.08 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=9.0
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 89999851996899814443
Q gi|254780442|r 296 DVATAVFEEADAIMLSAETA 315 (480)
Q Consensus 296 Dvanav~dG~D~imLs~ETa 315 (480)
|++.| .--.||.+|.|+.
T Consensus 419 dl~Aa--ReKnGvyisee~y 436 (1041)
T KOG0243 419 DLAAA--REKNGVYISEERY 436 (1041)
T ss_pred HHHHH--HHHCCEEECHHHH
T ss_conf 99976--7507447426777
No 451
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=24.70 E-value=42 Score=13.07 Aligned_cols=230 Identities=16% Similarity=0.187 Sum_probs=107.4
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEC-CCCCEE--ECC--CCEE
Q ss_conf 99999999973997899988888989999999999999997499279999878986788654-898189--658--9999
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKF-ANSKVD--LTE--GQIF 93 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR~g~~-~~~~i~--l~~--G~~v 93 (480)
..+.|..-.+.|--|-=+|+. +.|+.+.++ +++++.+.|+ |+.=.+|.--..|.. .-+.+. ..+ +=-|
T Consensus 5 ~~elL~~A~~~~yAV~AfNv~--n~e~~~avi----~AAee~~sPv-Ilq~s~~~~~~~g~~~~~~~~~~~a~~~a~VPV 77 (307)
T PRK05835 5 GNEILLKAHKEGYGVGAFNFV--NFEMLNAIF----EAGNEENSPL-FIQASEGAIKYMGIDMAVGMVKIMCERYPHIPV 77 (307)
T ss_pred HHHHHHHHHHCCCEEEEEEEC--CHHHHHHHH----HHHHHHCCCE-EEEECHHHHHHCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 899999999889189987789--999999999----9999978998-999573377667989999999999986699998
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHCCCC-CEEEEECCCEEEC--------CCC-CCCCEEEEEECCCCEEECCCCCCCCC
Q ss_conf 9953245564442212664422211336-5267406842210--------234-45411245513880871145644678
Q gi|254780442|r 94 TLDNKDSLGSSDRVMLPHPEIFASIKIG-DRLLIDDGRVKLC--------VQE-KGIGFIKCKVIAGISIADRKGISFPD 163 (480)
Q Consensus 94 ~l~~~~~~~~~~~i~i~y~~l~~~ik~G-d~I~idDG~i~l~--------V~~-~~~~~i~c~V~~gG~l~s~Kgvnip~ 163 (480)
.+..|.. -++..+.+.++.| +.|.+|-....|+ |.+ .+.-.+..+.+-|..-+...++..-.
T Consensus 78 alHLDH~--------~~~e~~~~ai~~GFsSVM~DgS~l~~eeNI~~tk~vve~ah~~gv~VEaElG~i~G~Ed~~~~~~ 149 (307)
T PRK05835 78 ALHLDHG--------TTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred EEECCCC--------CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 9989999--------99999999998199879951998999999999999999998709869997431256677767665
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC
Q ss_conf 54455567655677899887348853250585577347999998620034335553278566311788875331247522
Q gi|254780442|r 164 TFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR 243 (480)
Q Consensus 164 ~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR 243 (480)
.-..+|+- .+..+|. +.-++|++|.||=...-.. + .|=+.+.-++.|++|-+..+--+|=.
T Consensus 150 ---~~~~~T~p-eea~~Fv-~~TgvD~LAvaiGn~HG~y------------k--~~g~p~l~~~~L~~I~~~~~vPLVLH 210 (307)
T PRK05835 150 ---KDAVLVNP-KEAEQFV-KESQVDYLAPAIGTSHGAF------------K--FKGEPKLDFERLQEVKRLTNIPLVLH 210 (307)
T ss_pred ---CCCCCCCH-HHHHHHH-HHHCHHHHHHHHCCCCCCC------------C--CCCCCCCCHHHHHHHHHCCCCCEEEC
T ss_conf ---32234799-9999999-8747079999866557777------------7--78997678899999984179987956
Q ss_pred CCCCHHCCHHHHH-------------HHHHHHHHHHHHCC-CEEEEEHHHHHHHH
Q ss_conf 2200215876736-------------89999999985139-83998057678888
Q gi|254780442|r 244 GDLGVEMALELIP-------------GIQKKLIRIARQLG-KPVVIATQMLESMV 284 (480)
Q Consensus 244 GDLg~e~~~e~vp-------------~~Qk~ii~~~~~~~-kpvivATq~leSM~ 284 (480)
|-=| +|.+.+. -++...|++|.+.| ..+=+.|.+-..+.
T Consensus 211 GgSg--vpd~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv~KiNI~Tdl~~a~~ 263 (307)
T PRK05835 211 GASA--IPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFI 263 (307)
T ss_pred CCCC--CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHH
T ss_conf 8987--6078888875026656788899999999999869769986877899999
No 452
>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional
Probab=24.69 E-value=42 Score=13.07 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECC---CEEECCCCCCCCEEEEEECCCCEEECCCCCCCC
Q ss_conf 96589999995324556444221266442221133652674068---422102344541124551388087114564467
Q gi|254780442|r 86 DLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDG---RVKLCVQEKGIGFIKCKVIAGISIADRKGISFP 162 (480)
Q Consensus 86 ~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG---~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvnip 162 (480)
.+..|+.+.|+.++. .|---.--+++||.|.+-|| ....+|.+.+++.+.+++..--....... |
T Consensus 9 ~l~~~~~i~L~~~~~---------~Hl~~VlR~k~gd~i~v~dg~g~~~~a~I~~i~k~~~~~~i~~~~~~~~~~~---~ 76 (243)
T PRK11713 9 PLAAGETVILTGEEA---------HHLVRVLRLKEGDELRLFDGRGGEYLAEITEIGKKSVEVEILEKLEVEREPP---L 76 (243)
T ss_pred CCCCCCEEEECHHHH---------HHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCCC---C
T ss_conf 678999999788998---------8999816089999999997989799999999559989999951223678999---7
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHCCCCCEEC-----CCCCCCC-----HHHHHHHHHH----HCCCCEEEEEECCHHHH
Q ss_conf 854--455567655677899887348853250-----5855773-----4799999862----00343355532785663
Q gi|254780442|r 163 DTF--LTTQALTQKDREDLHAALQTCEVDWVA-----LSFIQSA-----DDLLEIRKII----SQNKIGLMSKIEKPRAI 226 (480)
Q Consensus 163 ~~~--i~l~~ltekD~~di~~a~~~~~vD~ia-----lSfVr~~-----~di~~~r~~l----~~~~~~IiaKIE~~~al 226 (480)
... +.++-- ++-...++-+.+ +||+-+- -|.++.. .-....++++ .+.+-..+.+|+.+.
T Consensus 77 ~i~L~~al~K~-~~~e~il~k~tE-lGV~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~eQs~r~~lP~i~~~~-- 152 (243)
T PRK11713 77 RLTLAQALPKG-DRLELIIQKATE-LGVSAIIPLITERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEIRPPV-- 152 (243)
T ss_pred EEEEEEEECCC-HHHHHHHHHHHH-HCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC--
T ss_conf 07999960075-589999999987-28777999970005452121056666999999999999970998287765767--
Q ss_pred HHHHHHHH
Q ss_conf 11788875
Q gi|254780442|r 227 EYASEIIQ 234 (480)
Q Consensus 227 ~nl~eI~~ 234 (480)
+|++.++
T Consensus 153 -~l~~~l~ 159 (243)
T PRK11713 153 -SLKELLE 159 (243)
T ss_pred -CHHHHHH
T ss_conf -9999995
No 453
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=24.68 E-value=42 Score=13.07 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=11.0
Q ss_pred EECCCCEEECCCCCCCCCCCC
Q ss_conf 513880871145644678544
Q gi|254780442|r 146 KVIAGISIADRKGISFPDTFL 166 (480)
Q Consensus 146 ~V~~gG~l~s~Kgvnip~~~i 166 (480)
.=+.||-|+|+.+|.-||..+
T Consensus 342 hFE~ggF~RS~~~v~~Pni~y 362 (540)
T TIGR01810 342 HFEAGGFVRSADDVKYPNIQY 362 (540)
T ss_pred CCCCCCEEECCCCCCCCCCEE
T ss_conf 202431101466788885201
No 454
>pfam01871 AMMECR1 AMMECR1. This family consists of several AMMECR1 as well as several uncharacterized proteins. The contiguous gene deletion syndrome AMME is characterized by Alport syndrome, midface hypoplasia, mental retardation and elliptocytosis and is caused by a deletion in Xq22.3, comprising several genes including COL4A5, FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function, potentially in either the transcription, replication, repair or translation machinery.
Probab=24.59 E-value=42 Score=13.06 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHHHHEEEEECCCCC----HHCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 7888753312475222200----2158767368999999998513983
Q gi|254780442|r 229 ASEIIQLSDAVMVARGDLG----VEMALELIPGIQKKLIRIARQLGKP 272 (480)
Q Consensus 229 l~eI~~~sDgimiaRGDLg----~e~~~e~vp~~Qk~ii~~~~~~~kp 272 (480)
++++--.-||++|.+|+-. -+++.|+.+..+..+-..|+++|-|
T Consensus 104 ~~~l~~G~~Glii~~g~~~~~~LP~Va~e~~wd~~~fl~~l~~KAGlp 151 (172)
T pfam01871 104 LEDLEVGRHGLIIEFGGYSGLLLPQVAVEQGWDPEEFLAHLCRKAGLP 151 (172)
T ss_pred HHHEEEECCEEEEEECCCCEEECCCCCHHHCCCHHHHHHHHHHHCCCC
T ss_conf 676774557799986893478998760132839999999999976999
No 455
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=24.57 E-value=42 Score=13.05 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=8.8
Q ss_pred CEEEEECCHHHHHHHHHHCCC
Q ss_conf 699992998999876665393
Q gi|254780442|r 396 EIIALSPMIQTARRLALVWGI 416 (480)
Q Consensus 396 pIiaiT~~~~t~r~l~L~~GV 416 (480)
|++.+.|-...+-++++.+|.
T Consensus 313 Pil~~iPlQLlAY~~A~~rG~ 333 (347)
T PRK11382 313 PFLMFVPMEWLCYYLSIYKDH 333 (347)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999997798
No 456
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=24.53 E-value=42 Score=13.05 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0347789999851996899814443544658999999998876301
Q gi|254780442|r 291 RAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER 336 (480)
Q Consensus 291 RaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~ 336 (480)
...+-.+|..+.+-...+ .+ . -.-+|+ +.++-..+.+.+-.
T Consensus 177 ~~~ak~LA~~l~~~~pii-yg-~--~~~~~v-A~R~k~qlnEnak~ 217 (328)
T PRK08674 177 KNLAKRLASKIYGRIPVI-YG-S--GLTRPV-AYRWKNQINENAKY 217 (328)
T ss_pred CHHHHHHHHHHCCCCCEE-EE-C--CCCHHH-HHHHHHHHHHHHCC
T ss_conf 259999999963898689-96-8--855799-99999999887457
No 457
>PRK08362 consensus
Probab=24.48 E-value=42 Score=13.04 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 99985222788886415999994
Q gi|254780442|r 450 IIISAGLPLGTPGSTNMLRIAYI 472 (480)
Q Consensus 450 VVvv~G~p~~~~G~TN~irv~~V 472 (480)
|.++-|..+|.. ..+.+|+..-
T Consensus 345 V~~~PG~~Fg~~-~~~~~Rl~~a 366 (389)
T PRK08362 345 VAVVPGSAFGKA-GEGYIRISYA 366 (389)
T ss_pred EEEECCHHHCCC-CCCEEEEEEC
T ss_conf 999867333889-9897999971
No 458
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.44 E-value=42 Score=13.04 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH--------HE-
Q ss_conf 556765567789988734885325058557734799999862003433555327856631178887533--------12-
Q gi|254780442|r 168 TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS--------DA- 238 (480)
Q Consensus 168 l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~s--------Dg- 238 (480)
-|..|+.|.+.+---+.+.++.-|++ ++..|..+|+.|...++++.+=|-=|.|-..++.-+.+. |.
T Consensus 16 ~~~~T~~~i~~lc~~A~~~~~aaVCV----~P~~V~~a~~~L~~s~v~v~tVigFP~G~~~~~~K~~E~~~ai~~GAdEi 91 (221)
T PRK00507 16 KPEATEEDIDKLCEEAKEYGFASVCV----NPSYVKLAAELLKGSDVKVCTVIGFPLGASTTAVKAFEAKDAIANGADEI 91 (221)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEE----CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 98799999999999999879948998----98999999998448998655781369999957689999999998599877
Q ss_pred -EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCC
Q ss_conf -4752222002158767368999999998513983998057678888288984034778999985-19968998144435
Q gi|254780442|r 239 -VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVF-EEADAIMLSAETAS 316 (480)
Q Consensus 239 -imiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~-dG~D~imLs~ETa~ 316 (480)
+++..|-|- +=..+.+..--+.+.+.|...--.||+-|-.| |..|+-....+.. -|+|-|= |+.
T Consensus 92 D~Vin~~~~~-~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L---------t~~ei~~a~~~~~~aGadfvK----TST 157 (221)
T PRK00507 92 DMVINIGALK-SGDWDAVEADIRAVVEAAGGKVLKVIIETCLL---------TDEEKVKACEICKEAGADFVK----TST 157 (221)
T ss_pred EEECCHHHHH-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC---------CHHHHHHHHHHHHHHCCCEEE----ECC
T ss_conf 7402599997-58488999999999987276736999744659---------999999999999982978786----058
Q ss_pred CCCH----HHHHHHHHHHHH
Q ss_conf 4465----899999999887
Q gi|254780442|r 317 GSYP----VDAVRTMSLVAS 332 (480)
Q Consensus 317 G~yP----~~~v~~~~~i~~ 332 (480)
|..| .+.|+.|++.+.
T Consensus 158 Gf~~~gat~e~v~~m~~~~~ 177 (221)
T PRK00507 158 GFSTGGATVEDVKLMRETVG 177 (221)
T ss_pred CCCCCCCCHHHHHHHHHHHC
T ss_conf 87889989999999999728
No 459
>pfam08408 DNA_pol_B_3 DNA polymerase family B viral insert. This viral domain is found between the exonuclease domain of the DNA polymerase family B (pfam03104) and the pfam00136 domain, connecting the two.
Probab=24.44 E-value=42 Score=13.04 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=42.8
Q ss_pred CEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEECCCCC--CCCEEEEEECCCCEEECCCCCCC
Q ss_conf 1896589999995324556444221266442221133652674068422102344--54112455138808711456446
Q gi|254780442|r 84 KVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEK--GIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 84 ~i~l~~G~~v~l~~~~~~~~~~~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~--~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
.++-..++.++|..+.....+.++.+ |.+.+..|..+.|+| ...+|..+ .++..+. .+.++++..+
T Consensus 10 ~i~~~~~~~~tf~g~~~~d~k~k~~i----F~~VL~TgNYitI~d--~v~kI~~K~i~~d~f~l------~v~~~~~~~~ 77 (149)
T pfam08408 10 KIEDINDNEYTFIGDSTTDAKDKISI----FSEVLSTGNYITIND--DVYKILDKEIIDDGFKL------TIANSKNYEF 77 (149)
T ss_pred EEEECCCCEEEEECCCCCCCCCHHHH----HHHHHHHCCEEEECC--HHHHHHCCCCCCCCEEE------EEECCCCCCC
T ss_conf 99975897699956886354644189----999872087699886--12021304013683499------9867888666
Q ss_pred CCCCCC
Q ss_conf 785445
Q gi|254780442|r 162 PDTFLT 167 (480)
Q Consensus 162 p~~~i~ 167 (480)
+|....
T Consensus 78 ~g~~~~ 83 (149)
T pfam08408 78 KGNIYT 83 (149)
T ss_pred CCCEEE
T ss_conf 797799
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=24.37 E-value=42 Score=13.03 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HCCCCEEEEECCCCCHH
Q ss_conf 77775269994187757999999999-73997899988888989
Q gi|254780442|r 2 VNLRRIKIISTLGPSSFSEDVINRLH-EEGTDVFRINMSHTSHD 44 (480)
Q Consensus 2 ~~mrktKIi~TlGPas~~~e~i~~l~-~aG~nv~RiN~SHg~~e 44 (480)
|-|++-++|+=.|||-.-..+|.+.+ +..-+.|++--||+|..
T Consensus 2 ~~~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~ 45 (208)
T PRK00300 2 MMMRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRA 45 (208)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 62418838999999988999999999972998689989746889
No 461
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=24.33 E-value=42 Score=13.02 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=8.9
Q ss_pred CH-HCCHHHHHHHHHHHHH
Q ss_conf 02-1587673689999999
Q gi|254780442|r 247 GV-EMALELIPGIQKKLIR 264 (480)
Q Consensus 247 g~-e~~~e~vp~~Qk~ii~ 264 (480)
.. ||++|++|.+=++|++
T Consensus 301 ~~~ei~L~elp~~~~~~l~ 319 (330)
T TIGR02823 301 TTQEITLEELPEAAEQILA 319 (330)
T ss_pred HCCCCCHHHHHHHHHHHHC
T ss_conf 4200157768999999973
No 462
>pfam06613 KorB_C KorB C-terminal beta-barrel domain. This family consists of several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon. This beta-barrel domain is found at the C-terminus of KorB.
Probab=24.26 E-value=42 Score=13.01 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=18.8
Q ss_pred CEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 689997088379999984188886
Q gi|254780442|r 373 SAIFCYTASGATGLRAARERPKLE 396 (480)
Q Consensus 373 ~aIiv~T~sG~tA~~iS~~RP~~p 396 (480)
|+|+.--+.|+.|+++..-||..-
T Consensus 8 K~ivqV~hdgR~Arl~LnrRp~~~ 31 (60)
T pfam06613 8 KPLLQVEHDGRPAAVLLNRRPPTA 31 (60)
T ss_pred CCEEEEEECCHHHHHHHCCCCCCC
T ss_conf 547999987714557654698767
No 463
>PRK00568 carbon storage regulator; Provisional
Probab=24.14 E-value=43 Score=13.00 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=19.9
Q ss_pred CCCCCEEEEECCCEEECCCCCCCCEEEE
Q ss_conf 1336526740684221023445411245
Q gi|254780442|r 118 IKIGDRLLIDDGRVKLCVQEKGIGFIKC 145 (480)
Q Consensus 118 ik~Gd~I~idDG~i~l~V~~~~~~~i~c 145 (480)
=|+|..|.|+| .|..+|+++.++.++-
T Consensus 6 RK~gEsI~Igd-dI~i~Vv~i~g~~Vrl 32 (76)
T PRK00568 6 RKVNEGIVIDD-NIHIKVISIDRGSVRL 32 (76)
T ss_pred CCCCCEEEECC-CEEEEEEEECCCEEEE
T ss_conf 33898589579-8699999973997999
No 464
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=23.94 E-value=43 Score=12.97 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 5331247522220021587673689999999985139839980
Q gi|254780442|r 234 QLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIA 276 (480)
Q Consensus 234 ~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivA 276 (480)
--.+|-|= |||.-|.--.=|+ +++-+++-||||+|
T Consensus 67 v~~~G~~p---DLG~~ve~fYnPL-----vRrL~~Lp~PVv~A 101 (259)
T TIGR02280 67 VTPGGAAP---DLGETVEKFYNPL-----VRRLRALPKPVVCA 101 (259)
T ss_pred CCCCCCCC---CCCCHHHHHHCHH-----HHHHHHCCCCEEEE
T ss_conf 88742258---5322177750748-----99997269977985
No 465
>pfam07521 RMMBL RNA-metabolising metallo-beta-lactamase. The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism.
Probab=23.86 E-value=43 Score=12.96 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=15.4
Q ss_pred CEEEEECC-CCCHHHHHHHHHHH
Q ss_conf 78999888-88989999999999
Q gi|254780442|r 32 DVFRINMS-HTSHDKMCELIKKI 53 (480)
Q Consensus 32 nv~RiN~S-Hg~~e~~~~~i~~i 53 (480)
.|..+.|| |.+.++..++++.+
T Consensus 8 ~v~~~~fSgHAd~~eL~~~i~~~ 30 (43)
T pfam07521 8 RVETLHFSGHADQEELLELLKLL 30 (43)
T ss_pred EEEEEEEECCCCHHHHHHHHHHC
T ss_conf 99999887368989999999966
No 466
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.66 E-value=44 Score=12.93 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.8
Q ss_pred CCCHHCCHHHH
Q ss_conf 20021587673
Q gi|254780442|r 245 DLGVEMALELI 255 (480)
Q Consensus 245 DLg~e~~~e~v 255 (480)
.+|+|.+.+++
T Consensus 115 ~~giEs~~~~~ 125 (216)
T smart00729 115 SLGVQSGSDEV 125 (216)
T ss_pred CCCCCCCHHHH
T ss_conf 66735507899
No 467
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.61 E-value=44 Score=12.93 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred CCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEE
Q ss_conf 44222113365267406842210234454112455
Q gi|254780442|r 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCK 146 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~ 146 (480)
.++...+++||+|..-.|.+- +|.++.++.+.-+
T Consensus 38 ~~ml~sL~kGD~VvT~gGi~G-~V~~v~d~~v~I~ 71 (97)
T COG1862 38 QELLNSLKKGDEVVTIGGIVG-TVTKVGDDTVEIE 71 (97)
T ss_pred HHHHHHCCCCCEEEECCCEEE-EEEEEECCCEEEE
T ss_conf 999974568998997587399-9999706818999
No 468
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=23.60 E-value=44 Score=12.93 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=29.0
Q ss_pred CCCE-EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHH
Q ss_conf 8808-7114564467854455567655677899887348853250585577347999
Q gi|254780442|r 149 AGIS-IADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLE 204 (480)
Q Consensus 149 ~gG~-l~s~Kgvnip~~~i~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~ 204 (480)
-.|. -..-.|+|+=|. .-.-+++++..+|+-+.+.+ +.- .++|-+++++|.+
T Consensus 180 ~~G~~~a~l~GlN~vGL--rR~Gf~~~~i~~i~~ayr~l-fr~-~~~~~~~~~~v~e 232 (257)
T TIGR01852 180 VEGNSRAVLRGLNIVGL--RRRGFDREEITAIKKAYRLL-FRS-GLPLQEALQQVAE 232 (257)
T ss_pred ECCCCCCEEEEEEEEEE--ECCCCCHHHHHHHHHHHHHH-HCC-CCCHHHHHHHHHH
T ss_conf 63787533788701322--13787989999999998876-179-9898999999983
No 469
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=23.54 E-value=44 Score=12.92 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 1877579999999997399789998888898---99999999999999974992799998789
Q gi|254780442|r 13 LGPSSFSEDVINRLHEEGTDVFRINMSHTSH---DKMCELIKKIRAVELRSRRPIGILIDLQG 72 (480)
Q Consensus 13 lGPas~~~e~i~~l~~aG~nv~RiN~SHg~~---e~~~~~i~~ir~~~~~~~~~i~Il~Dl~G 72 (480)
|+|..++...+.++... ++..|-.. --...+++-||+|+.+.+ =.+|++||.=
T Consensus 53 ~~~~~d~~~r~~~l~~~------l~G~~~~~lq~~~l~dvv~Ai~~A~~D~~-I~~~~~DL~~ 108 (614)
T TIGR00705 53 VVDVQDESPRLSDLLQE------LLGNQKERLQKISLFDVVNAIRQAADDRR-IEGLVLDLKN 108 (614)
T ss_pred EEECCCCCHHHHHHHHH------HCCCCCHHHHHCCHHHHHHHHHHHCCCCC-EEEEEEECCC
T ss_conf 78547765579999997------53575303554025589999983012787-0899973332
No 470
>pfam09954 DUF2188 Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=23.54 E-value=39 Score=13.32 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 78888288984034778999985-1996
Q gi|254780442|r 280 LESMVTSPFPTRAEVSDVATAVF-EEAD 306 (480)
Q Consensus 280 leSM~~~p~PTRaEv~Dvanav~-dG~D 306 (480)
-.||.+-+-+.|.-.-|||||.+ +|.+
T Consensus 9 P~s~knl~~~~R~KAieIaNall~egy~ 36 (131)
T pfam09954 9 PASWKNLDKLIRKKAIDIANAMLKEGYK 36 (131)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 6777606899999999999999982665
No 471
>PRK07004 replicative DNA helicase; Provisional
Probab=23.52 E-value=44 Score=12.92 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH---HHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 566311788875---33124752222002158767368999999998513983998
Q gi|254780442|r 223 PRAIEYASEIIQ---LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 223 ~~al~nl~eI~~---~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+-|+..||+++. -+|=|.| |.--+.-|..++.......|.+.|+||.+
T Consensus 197 ~TGf~~LD~~t~Gl~~gdLiII-----AARPsmGKTafAlniA~n~A~~~g~~V~~ 247 (460)
T PRK07004 197 PTGFVDLDRMTSGMHGGELIIV-----AGRPSMGKTAFSMNIGEYVAVEYGLPVAV 247 (460)
T ss_pred CCCHHHHHHHHCCCCCCCEEEE-----EECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6793889865238987757999-----73687642699999999998725886699
No 472
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=23.50 E-value=44 Score=12.91 Aligned_cols=133 Identities=14% Similarity=0.296 Sum_probs=64.7
Q ss_pred HHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHH-
Q ss_conf 7899887348853250585577347999998620034--3355532785663117888753312475222200215876-
Q gi|254780442|r 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNK--IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALE- 253 (480)
Q Consensus 177 ~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~--~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e- 253 (480)
+.|+..++ .++|+|.. ++.+.+++.++-+.+.+.+ +++--+-+|+ ++.++.++...|.|++ ++++-|..
T Consensus 75 ~~i~~~~~-~g~d~I~~-H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T~--~~~l~~~l~~iD~Vlv----MtV~PGf~G 146 (220)
T PRK05581 75 RYVPDFAK-AGADIITF-HVEASEHIHRLLQLIKEAGIKAGLVLNPATP--LEYLEYVLPLLDLVLL----MSVNPGFGG 146 (220)
T ss_pred HHHHHHHH-CCCCEEEE-CCCCCCCHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHCEEEE----EEECCCCCC
T ss_conf 87999997-39988998-1675027999999999749970467669999--8999999874152589----986588787
Q ss_pred --HHHHHHHHH---HHHHHHCCCEEE--EEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf --736899999---999851398399--8057678888288984034778999985199689981444354465899999
Q gi|254780442|r 254 --LIPGIQKKL---IRIARQLGKPVV--IATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRT 326 (480)
Q Consensus 254 --~vp~~Qk~i---i~~~~~~~kpvi--vATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~ 326 (480)
..|..-++| =+...+.+..+. |-.-+=. .-+.-..--|+|.+....---....|.++++.
T Consensus 147 Q~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~-------------~~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~ 213 (220)
T PRK05581 147 QKFIPEVLEKIREVRKLIDERGLDILIEVDGGVNA-------------ENIKECAEAGADVFVAGSAVFGAPDYKEAIDE 213 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-------------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 64556699999999999984599755999789898-------------99999997799999979488579999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780442|r 327 MSLV 330 (480)
Q Consensus 327 ~~~i 330 (480)
|++-
T Consensus 214 lk~~ 217 (220)
T PRK05581 214 LRAE 217 (220)
T ss_pred HHHH
T ss_conf 9998
No 473
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=44 Score=12.91 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHCCCCCEEEEECCCEEECCCCC-----------------------CCCEEEEEECCCCEEECCCCCCC
Q ss_conf 21133652674068422102344-----------------------54112455138808711456446
Q gi|254780442|r 116 ASIKIGDRLLIDDGRVKLCVQEK-----------------------GIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 116 ~~ik~Gd~I~idDG~i~l~V~~~-----------------------~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
..+..||+.-+ |...|+|..- +...+.|+|+.+|.++.+-.+.+
T Consensus 93 ~~l~iGdr~ri--G~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL~~G~v~~gD~l~l 159 (210)
T COG2258 93 ANLCIGDRFRI--GEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVLEEGKVRAGDPLKL 159 (210)
T ss_pred HHCCCCCEEEE--CCEEEEECCCCCCHHHHHHHCCCCCHHHHHHCCCCCCEEEEECCCCEECCCCCEEE
T ss_conf 21632578973--33899962787854889885488307787432585428999864653559995587
No 474
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.23 E-value=44 Score=12.88 Aligned_cols=66 Identities=20% Similarity=0.404 Sum_probs=37.5
Q ss_pred EEEEEC--CCCCC--CHHHHHHHHHCCCCEEEEECCC------C-CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE
Q ss_conf 699941--87757--9999999997399789998888------8-98999999999999999749927999987898678
Q gi|254780442|r 8 KIISTL--GPSSF--SEDVINRLHEEGTDVFRINMSH------T-SHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFR 76 (480)
Q Consensus 8 KIi~Tl--GPas~--~~e~i~~l~~aG~nv~RiN~SH------g-~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkiR 76 (480)
.|+.-+ ||.|. +.+.++.-.++|+.-. +-.|| . +.+..++....+++..++...++-+ ++|.+||
T Consensus 7 HIlp~iDDGp~s~eesl~ml~~A~~qGvt~i-VaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v---~pGQEIr 82 (254)
T COG4464 7 HILPDIDDGPKSLEESLAMLREAVRQGVTKI-VATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKV---LPGQEIR 82 (254)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE---CCCCEEE
T ss_conf 4667878898758999999999997576079-51333247766891999999999999888862678266---1686689
Q ss_pred E
Q ss_conf 8
Q gi|254780442|r 77 V 77 (480)
Q Consensus 77 ~ 77 (480)
+
T Consensus 83 I 83 (254)
T COG4464 83 I 83 (254)
T ss_pred E
T ss_conf 7
No 475
>PRK07568 aspartate aminotransferase; Provisional
Probab=23.22 E-value=44 Score=12.88 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCCCCEEEEEEEECCCCC-C-CCCEEEEEEEC
Q ss_conf 99999998888778877999852227888-8-64159999945
Q gi|254780442|r 433 RACRIVVEQGFGKPGDRIIISAGLPLGTP-G-STNMLRIAYIG 473 (480)
Q Consensus 433 ~a~~~l~~~g~i~~GD~VVvv~G~p~~~~-G-~TN~irv~~Vg 473 (480)
.+...+++...- +..|.++-|..++.. | +.|.+|+-...
T Consensus 334 f~~~ll~~~~~~--~~~V~v~PG~~F~~~~g~g~~~iRls~~~ 374 (396)
T PRK07568 334 FAKWMLTDFEYN--GETVMVAPASGFYATPGLGKDEIRIAYVL 374 (396)
T ss_pred HHHHHHHHHHHC--CCEEEEECCHHHCCCCCCCCCEEEEEECC
T ss_conf 999999962124--88699977634168998999969999719
No 476
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=23.18 E-value=44 Score=12.87 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7579999999997399789998888898-99999999999999974992799
Q gi|254780442|r 16 SSFSEDVINRLHEEGTDVFRINMSHTSH-DKMCELIKKIRAVELRSRRPIGI 66 (480)
Q Consensus 16 as~~~e~i~~l~~aG~nv~RiN~SHg~~-e~~~~~i~~ir~~~~~~~~~i~I 66 (480)
+....|.++.++++|-|.+-+--|.|-. |+...+++.+| ++.+.||-+
T Consensus 13 p~e~~eI~~a~~~~GTDail~GGs~gVt~~~~~~~~~~~~---e~~~~P~il 61 (242)
T TIGR01768 13 PEEADEIAKAAAESGTDAILVGGSQGVTLDKLDQLIEALR---ERYGVPIIL 61 (242)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH---HCCCCCEEE
T ss_conf 8636899999983589889822778703688999999997---405983798
No 477
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=23.02 E-value=30 Score=14.11 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=11.0
Q ss_pred HHHHHHHHHEEEEECCCCC--HHCCHHHHH
Q ss_conf 7888753312475222200--215876736
Q gi|254780442|r 229 ASEIIQLSDAVMVARGDLG--VEMALELIP 256 (480)
Q Consensus 229 l~eI~~~sDgimiaRGDLg--~e~~~e~vp 256 (480)
++.|+..-.|++-||+-.- ..+|-|++.
T Consensus 202 i~~l~~rl~gvi~a~~~~~i~~n~p~~~ld 231 (290)
T COG0040 202 IDQLVTRLKGVIEARGSKYIMLNAPRERLD 231 (290)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCHHHHH
T ss_conf 999999999998534466899548877877
No 478
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=23.02 E-value=45 Score=12.85 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCCCCCCCHHH-CCCCCEEEEECCCEEECCCCCCCCEEE---EEECCCCEEECCCCCC-----CCCCCC-CCCCCCHHHH
Q ss_conf 21266442221-133652674068422102344541124---5513880871145644-----678544-5556765567
Q gi|254780442|r 107 VMLPHPEIFAS-IKIGDRLLIDDGRVKLCVQEKGIGFIK---CKVIAGISIADRKGIS-----FPDTFL-TTQALTQKDR 176 (480)
Q Consensus 107 i~i~y~~l~~~-ik~Gd~I~idDG~i~l~V~~~~~~~i~---c~V~~gG~l~s~Kgvn-----ip~~~i-~l~~ltekD~ 176 (480)
+.+-..-++.. +..||..+|..|.+.|. -.++++.+. +.| .|-.+.+++-+- .++.+- .++.||++++
T Consensus 71 vtIgh~a~ihG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~g~~i~~g~~v~~G~~v~~~~pa~~~~~lt~~~~ 148 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-DGVEIPPGRYVPAGAVITSQTQADALPDVTDSAR 148 (167)
T ss_pred CEECCCCEECCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-ECCCCCCCCEECCCCEEECCCCHHHCCCCCHHHH
T ss_conf 28989848812049839988988989982-597699899889888-4778399989558828836996697337999999
Q ss_pred HHHHHHHHC
Q ss_conf 789988734
Q gi|254780442|r 177 EDLHAALQT 185 (480)
Q Consensus 177 ~di~~a~~~ 185 (480)
+.++-..+.
T Consensus 149 ~~~~~~~~~ 157 (167)
T cd00710 149 EFNEKVITV 157 (167)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 479
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=22.97 E-value=45 Score=12.84 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=27.9
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 96899814443544658999999998876301012444444320387888878999999998610478689997088379
Q gi|254780442|r 305 ADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGAT 384 (480)
Q Consensus 305 ~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~aIa~aav~lA~~l~a~aIiv~T~sG~t 384 (480)
+.-+++||...-+..+.|+ +.|.+.+.+.- ... ..........++..++ ..+.++..+.+.+-+++.|..-.+
T Consensus 31 ~~~ii~sGg~~~~~~~~ea-~~~~~~l~~~g--vp~--~~I~~e~~s~nT~ena--~~~~~~~~~~~~~~v~lVTs~~H~ 103 (148)
T pfam02698 31 APRIIVSGGAGGGEPVSEA-EVMRRYLVELG--VPA--EAILLEPQSRNTYENA--RFSAELLRERGLRRVLLVTSAFHM 103 (148)
T ss_pred CCEEEEECCCCCCCCCCHH-HHHHHHHHHCC--CCH--HHEECCCCCCCHHHHH--HHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 9889984898888887899-99999999869--899--9977455677835519--999999997699759998988899
No 480
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=22.92 E-value=45 Score=12.83 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 3799999841888869999299899987666539379993687-999999999999999888877887799985
Q gi|254780442|r 382 GATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDA-SDSDDMVNRACRIVVEQGFGKPGDRIIISA 454 (480)
Q Consensus 382 G~tA~~iS~~RP~~pIiaiT~~~~t~r~l~L~~GV~p~~~~~~-~~~~~~i~~a~~~l~~~g~i~~GD~VVvv~ 454 (480)
|-++.-+.+|=|.++=.-+ .+.++++|.+-..-...-+.+. +.....+..++..+.+.|.+|+||.+++.+
T Consensus 237 ~l~~~dId~~vpHQan~ri--~~~i~~~l~~~~~k~~~~~~~yGNtsaAsiplaL~~~~~~g~ik~Gd~vll~~ 308 (323)
T COG0332 237 GLTPEDIDWFVPHQANLRI--IEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIKPGDLVLLEA 308 (323)
T ss_pred CCCHHHCCEECCCCCCHHH--HHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 9998899887206454999--99999982998899756898755463230899999874508989998999993
No 481
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=22.90 E-value=45 Score=12.83 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCCCEEEEECCCH-HHHHHHHHHCCCCCEEEE--ECCHHHHHH---HHH--------HCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 4786899970883-799999841888869999--299899987---666--------53937999368799999999999
Q gi|254780442|r 370 LRLSAIFCYTASG-ATGLRAARERPKLEIIAL--SPMIQTARR---LAL--------VWGIHCVVTEDASDSDDMVNRAC 435 (480)
Q Consensus 370 l~a~aIiv~T~sG-~tA~~iS~~RP~~pIiai--T~~~~t~r~---l~L--------~~GV~p~~~~~~~~~~~~i~~a~ 435 (480)
-..++||+..+-| .-|+++|.|---.||+++ ..-..++++ ..+ ..|=.-+.+++..|+-++++.|.
T Consensus 28 ~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~ 107 (192)
T COG2236 28 FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELAL 107 (192)
T ss_pred CCCCEEEEECCCCEEHHHHHHHHHCCCCEEEEEEEEEHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 87768999867860279999998688724799988850011237763361276546558985899823337617699999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780442|r 436 RIVVE 440 (480)
Q Consensus 436 ~~l~~ 440 (480)
+++.+
T Consensus 108 ~~l~~ 112 (192)
T COG2236 108 EELKK 112 (192)
T ss_pred HHHHH
T ss_conf 99985
No 482
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.75 E-value=45 Score=12.81 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=23.5
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9999999997399789998888898999999999
Q gi|254780442|r 19 SEDVINRLHEEGTDVFRINMSHTSHDKMCELIKK 52 (480)
Q Consensus 19 ~~e~i~~l~~aG~nv~RiN~SHg~~e~~~~~i~~ 52 (480)
+.+.++.|.++|+|+.-|-+-+.++-.--.+|+.
T Consensus 31 s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~ 64 (263)
T CHL00200 31 TKKALKILDKKGADIIELGIPYSDPLADGPIIQE 64 (263)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 9999999997699999978988886665899999
No 483
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.71 E-value=45 Score=12.81 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 7368999999998513983998
Q gi|254780442|r 254 LIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 254 ~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+....-+++-..|+++|.|.|+
T Consensus 183 ~~l~~A~~l~~Lc~~y~a~fII 204 (345)
T PRK02615 183 ERLEEAKQLKELCKRYGALFIV 204 (345)
T ss_pred HHHHHHHHHHHHHHHHCCEEEE
T ss_conf 9999999999999995994898
No 484
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=22.59 E-value=46 Score=12.79 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 117888753312475222200215876736899999999851398399805
Q gi|254780442|r 227 EYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIAT 277 (480)
Q Consensus 227 ~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivAT 277 (480)
+|.++.++..|-|+-+-.+ +..+..+.+.|+++++|.|.+.
T Consensus 81 ~~~~~~~~~~dvvi~~~D~----------~~~r~~l~~~~~~~~ip~i~~~ 121 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred HHHHHHHCCCCEEEECCCC----------HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4699997599999987799----------9999999999998699889963
No 485
>pfam01274 Malate_synthase Malate synthase.
Probab=22.55 E-value=46 Score=12.78 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=80.0
Q ss_pred HCCCCCEECCCCCCCCHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHHH------------------
Q ss_conf 348853250585577347999998620---------03433555327856631178887533------------------
Q gi|254780442|r 184 QTCEVDWVALSFIQSADDLLEIRKIIS---------QNKIGLMSKIEKPRAIEYASEIIQLS------------------ 236 (480)
Q Consensus 184 ~~~~vD~ialSfVr~~~di~~~r~~l~---------~~~~~IiaKIE~~~al~nl~eI~~~s------------------ 236 (480)
+.+.--|+-++-..+....+--.+++. ...++...=|||..|.-+++||+-+-
T Consensus 199 ~~g~gpYfYlPKlEs~~EArlWndvF~~ae~~Lglp~gTIKatVLIEti~AafemeEiLyeLrdh~~gLN~GrWDYifS~ 278 (524)
T pfam01274 199 SRGGGPYFYLPKMESHLEAALWNDVFNRAEDYLGIPRGTIKATVLIETLPAAFQMDEIIYELRDHSAGLNCGRWDYIFSE 278 (524)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHH
T ss_conf 28998338710567789999999999999998478988567886554427785399999998636776543505655679
Q ss_pred --------HEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCH--HHH---------HHH
Q ss_conf --------1247522220021587673689999999985139839980576788882889840--347---------789
Q gi|254780442|r 237 --------DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTR--AEV---------SDV 297 (480)
Q Consensus 237 --------DgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTR--aEv---------~Dv 297 (480)
|.++=+|..+.+..|+ +-.+-+..++.|++.|-..|-- |. .-.|.+ .|+ .|=
T Consensus 279 Ik~~~~~~~~vlPDR~~vtm~~pf--m~aY~~llV~tchkRga~A~GG------Ma-a~ip~~~d~~~n~~a~~~v~~dK 349 (524)
T pfam01274 279 IKTLRNAPDMVLPDRKAVTMTVPF--MRAYEKLLIDTCHKRGVHAMGG------MA-AQIPIKDDMEANPAAMEKVRADK 349 (524)
T ss_pred HHHHHHCCCCCCCCHHHHHHCCHH--HHHHHHHHHHHHHHHCCCHHCC------CC-CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 887744789758555553313789--9999999899986404413105------51-22779865555199999999999
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99985199689981
Q gi|254780442|r 298 ATAVFEEADAIMLS 311 (480)
Q Consensus 298 anav~dG~D~imLs 311 (480)
..-+.+|.||-+..
T Consensus 350 ~rE~~~G~dgaWVa 363 (524)
T pfam01274 350 LREVRAGHDGTWVA 363 (524)
T ss_pred HHHHHCCCCCCCCC
T ss_conf 88887699863447
No 486
>pfam11205 DUF2987 Protein of unknown function (DUF2987). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.47 E-value=46 Score=12.77 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=25.6
Q ss_pred CCCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCEEECCCCCCC
Q ss_conf 22126644222113365267406842210234454112455138808711456446
Q gi|254780442|r 106 RVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISF 161 (480)
Q Consensus 106 ~i~i~y~~l~~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvni 161 (480)
.+.++|..|+..+|...+=-..+=++.|-+.....+.. |.+.+|-.....+..-+
T Consensus 5 ~~~l~Ys~fY~~lK~~~K~~~~~v~vaf~~~d~~~~~~-C~I~~a~i~te~~~~~L 59 (148)
T pfam11205 5 PISLEYSGFYSRLKQVNKEDYPLVEVAFYLPDAQTGQA-CQIEKAWIETEKHYEPL 59 (148)
T ss_pred EEEEEHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CEEEEEEEEEECCEEEE
T ss_conf 69986388889875243389742899999872898861-17977799870214542
No 487
>pfam04101 Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.
Probab=22.34 E-value=46 Score=12.75 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 55773479999986200343355532785663117888753312475222200215876736899999999851398399
Q gi|254780442|r 195 FIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVV 274 (480)
Q Consensus 195 fVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvi 274 (480)
+.--..+..+++....+.+. +++-..-.+|+++.+..|| ++|+|+-=+ -+..+-..|||.|
T Consensus 36 hq~G~~~~~~~~~~~~~~~~----~~~~~~f~~~m~~~~~~ad-lvIsRaGa~--------------Ti~E~~~~g~P~I 96 (167)
T pfam04101 36 HQTGKSDYEPVNCKYSKFGI----NVEVFPFIDNMAEYIKAAD-LVISRAGAG--------------TIAELLALGKPAI 96 (167)
T ss_pred EEECCCHHHHHHHHHHHCCC----CEEEEEHHHHHHHHHHHCC-HHHHCCCCH--------------HHHHHHHHCCCEE
T ss_conf 98597358999999860599----8899712555999999660-688657622--------------7999999489989
Q ss_pred EEHHHHHHHHHCCCCCHHH--HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8057678888288984034--778999985199689981444354465899999999887630
Q gi|254780442|r 275 IATQMLESMVTSPFPTRAE--VSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 275 vATq~leSM~~~p~PTRaE--v~Dvanav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E 335 (480)
. =|.|.-++ -.+=|..+.+---|+++..+... |.+-.+.+.++...-+
T Consensus 97 l----------iP~p~~~~~hQ~~NA~~l~~~gaa~~i~e~~~~---~~~L~~~i~~l~~~~~ 146 (167)
T pfam04101 97 L----------VPRPKAAGEHQDNNALELVKAGAALVLLQKELT---PEKLVEALLKLLLKPL 146 (167)
T ss_pred E----------ECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHCCHH
T ss_conf 9----------707655656399999999987998996426799---9999999999986999
No 488
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=22.31 E-value=46 Score=12.75 Aligned_cols=35 Identities=9% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCEEEEEHHHHHHHHHC-CCCCHHHHHHHHHHHHCC
Q ss_conf 98399805767888828-898403477899998519
Q gi|254780442|r 270 GKPVVIATQMLESMVTS-PFPTRAEVSDVATAVFEE 304 (480)
Q Consensus 270 ~kpvivATq~leSM~~~-p~PTRaEv~Dvanav~dG 304 (480)
-+-+++..++.+.|.++ +..+|.|+..+++..++.
T Consensus 17 ~~~~F~G~e~V~wL~~~~~~~~r~~A~~l~~~ll~~ 52 (77)
T smart00049 17 YPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDE 52 (77)
T ss_pred CCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 897788099999999827779999999999999988
No 489
>PRK06220 consensus
Probab=22.13 E-value=46 Score=12.73 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 999999998888778877999852227888864159999945
Q gi|254780442|r 432 NRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473 (480)
Q Consensus 432 ~~a~~~l~~~g~i~~GD~VVvv~G~p~~~~G~TN~irv~~Vg 473 (480)
+.+.+.+.+.| |.++-|..+|.. ..+.+|+-...
T Consensus 329 ~~~~~ll~~~g-------V~v~PG~~Fg~~-~~g~iRl~f~~ 362 (384)
T PRK06220 329 ALAFDILEEAG-------VGVTPGIDFGNG-GEGYLRFSYAN 362 (384)
T ss_pred HHHHHHHHHCC-------EEEECCHHCCCC-CCCEEEEEECC
T ss_conf 99999998399-------999778100889-99979999709
No 490
>PRK07476 threonine dehydratase; Provisional
Probab=22.06 E-value=47 Score=12.72 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=17.6
Q ss_pred HHHHHHCC-CCCEEEEECCCHHH----HHHHHHHCCCCCEEEEECC
Q ss_conf 99986104-78689997088379----9999841888869999299
Q gi|254780442|r 363 ARQIAETL-RLSAIFCYTASGAT----GLRAARERPKLEIIALSPM 403 (480)
Q Consensus 363 av~lA~~l-~a~aIiv~T~sG~t----A~~iS~~RP~~pIiaiT~~ 403 (480)
+.++.+++ +.+.+++..-.|.+ +..+-..+|...|+++-+.
T Consensus 161 g~EI~eq~p~~d~vvv~~GgGGl~~Gi~~~~k~~~p~~kvigVe~~ 206 (323)
T PRK07476 161 GLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSME 206 (323)
T ss_pred HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999986677553343048835899999988631798669996138
No 491
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=21.85 E-value=38 Score=13.35 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=7.2
Q ss_pred CCCHHHCCCCCEEEE
Q ss_conf 442221133652674
Q gi|254780442|r 112 PEIFASIKIGDRLLI 126 (480)
Q Consensus 112 ~~l~~~ik~Gd~I~i 126 (480)
|+|++.+++||.|.-
T Consensus 40 PeF~~kvr~GDviVA 54 (159)
T TIGR02087 40 PEFAKKVREGDVIVA 54 (159)
T ss_pred CCHHHHCCCCCEEEE
T ss_conf 631340789978871
No 492
>KOG0242 consensus
Probab=21.79 E-value=46 Score=12.79 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=7.0
Q ss_pred CCCEEEEEECCCCCEE
Q ss_conf 8986788654898189
Q gi|254780442|r 71 QGPKFRVGKFANSKVD 86 (480)
Q Consensus 71 ~GpkiR~g~~~~~~i~ 86 (480)
.|+.+|+-+-.++.+.
T Consensus 154 ~~~~L~irED~~~gi~ 169 (675)
T KOG0242 154 DGGDLRLREDSEGGIV 169 (675)
T ss_pred CCCCCEEEECCCCCEE
T ss_conf 9998357684889989
No 493
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=21.77 E-value=47 Score=12.68 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=19.0
Q ss_pred HCCCCCEEEEECCCEEECCCCCC
Q ss_conf 11336526740684221023445
Q gi|254780442|r 117 SIKIGDRLLIDDGRVKLCVQEKG 139 (480)
Q Consensus 117 ~ik~Gd~I~idDG~i~l~V~~~~ 139 (480)
.+++||.++=|.|+..++|++-.
T Consensus 62 ~~~~G~~L~S~~~rpl~tIv~DT 84 (198)
T TIGR03424 62 YLTTGSVLYSNEGNPMLTIVADT 84 (198)
T ss_pred CCCCCCEEEECCCCEEEEEECCC
T ss_conf 47899997819998869996888
No 494
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=21.75 E-value=47 Score=12.67 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=17.7
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 19968998144435446589999999
Q gi|254780442|r 303 EEADAIMLSAETASGSYPVDAVRTMS 328 (480)
Q Consensus 303 dG~D~imLs~ETa~G~yP~~~v~~~~ 328 (480)
-|-.|+||||-.+.|-|-.-+++.|-
T Consensus 67 ~GrTAL~LSGGa~~G~~H~GVvkaL~ 92 (298)
T cd07206 67 FGRTALMLSGGASLGLFHLGVVKALW 92 (298)
T ss_pred HCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 29735773284666657899999999
No 495
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=21.75 E-value=47 Score=12.67 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHCCHHHH
Q ss_conf 77899887348853250585577347999998620034335553278566311788875331247522220021587673
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELI 255 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~~~e~v 255 (480)
.+.+--.+++.++|-+-+.-.--.+. .++++.+.++++..|.=|--...-+.+..|.+.|+|-+-.=.-.|+-=.-..+
T Consensus 103 ~e~F~~~~~~~GvdGvIipDLP~eE~-~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~gFiY~vs~~GvTG~~~~~ 181 (258)
T pfam00290 103 IERFYAQAAEAGVDGLIIPDLPPEEA-DPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYLVSRAGVTGARNAF 181 (258)
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 99999999975997787079998899-99999998458435888458881999999996089808998534456765556
Q ss_pred HHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 68999999998513-9839980576788882889840347789999851996899
Q gi|254780442|r 256 PGIQKKLIRIARQL-GKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIM 309 (480)
Q Consensus 256 p~~Qk~ii~~~~~~-~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~im 309 (480)
+.--+..+++.+++ .+|+.+-.-+=. .+-++.+..++||+.
T Consensus 182 ~~~~~~~i~~ik~~t~~Pv~vGFGIs~-------------~e~v~~~~~~aDGvI 223 (258)
T pfam00290 182 NAQLDELVERLKKYTNVPVAVGFGIST-------------PEHVKKIAAGADGVI 223 (258)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCC-------------HHHHHHHHCCCCEEE
T ss_conf 388999999998606998489945799-------------999999981599999
No 496
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=21.63 E-value=47 Score=12.66 Aligned_cols=100 Identities=21% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEE------EECCHHHHHHHHHHHHHHHEEEEECCCC
Q ss_conf 5567789988734885325058557734799999862003433555------3278566311788875331247522220
Q gi|254780442|r 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMS------KIEKPRAIEYASEIIQLSDAVMVARGDL 246 (480)
Q Consensus 173 ekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~Iia------KIE~~~al~nl~eI~~~sDgimiaRGDL 246 (480)
.+|.+++---+.+.+|+++....+ +.++-..+.++..+..--..| ..+....++.|.+.+...+ .+|=|..
T Consensus 19 ~~d~~~vl~~a~~~gV~~~i~~g~-~~~~~~~~~~l~~~~~~i~~a~GiHP~~~~~~~~~~~l~~l~~~~~--vvAIGEi 95 (265)
T PRK10812 19 HKDVDDVLAKAAARDVKFCLAVAT-TLPGYLHMRDLVGERDNVVFSCGVHPLNQDEPYDVEDLRRLAAEEG--VVAMGET 95 (265)
T ss_pred HCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--EEEEEEC
T ss_conf 139999999999869988999539-9899999999985399817995048576686310999999851899--3898505
Q ss_pred CHHC-----CHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 0215-----8767368999999998513983998
Q gi|254780442|r 247 GVEM-----ALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 247 g~e~-----~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
|.+. +.+.=-.+-+.-|..|.+++|||++
T Consensus 96 GLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvii 129 (265)
T PRK10812 96 GLDYFYTPETKVRQQASFIHHIQIGRELNKPVIV 129 (265)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 7999999987999999999999999974798699
No 497
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=21.62 E-value=47 Score=12.65 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred CEEEEECCCHHHH---HHHHHHCC-CCCEEEEECCH
Q ss_conf 6899970883799---99984188-88699992998
Q gi|254780442|r 373 SAIFCYTASGATG---LRAARERP-KLEIIALSPMI 404 (480)
Q Consensus 373 ~aIiv~T~sG~tA---~~iS~~RP-~~pIiaiT~~~ 404 (480)
+.++.+|+||.+- .+|++..- ..+||++|.++
T Consensus 49 Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~lia~T~~p 84 (272)
T TIGR00393 49 DVVLLISYSGESKELDKLIPSLKRLSVKLIAVTGKP 84 (272)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 479998768875778775357775597089972888
No 498
>PRK09248 putative hydrolase; Validated
Probab=21.61 E-value=47 Score=12.65 Aligned_cols=70 Identities=9% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCHHC-------CHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999986200343355532785663117888753312475222200215-------8767368999999998513983998
Q gi|254780442|r 203 LEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEM-------ALELIPGIQKKLIRIARQLGKPVVI 275 (480)
Q Consensus 203 ~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaRGDLg~e~-------~~e~vp~~Qk~ii~~~~~~~kpviv 275 (480)
+.+-+.+....+.|++-..++..=-+++++++++ ++-+..+|+ +--....-.+.|++.|.++|.|+.+
T Consensus 116 ~~~i~ai~n~~vdiigHp~~~~~~~D~e~v~~aa-----~e~g~~lEIN~s~~r~~r~~~~~~~~~il~~a~~~Gv~i~i 190 (246)
T PRK09248 116 QAMINAIKSGRVDIIGHPGNPKYPIDIEAVVKAA-----AEHNVALEINNSSFKHSRKGSEDNCRAIAALCKKAGVWVAL 190 (246)
T ss_pred HHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH-----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9999998579976898999998885899999999-----98496999958866667787644689999999981993998
Q ss_pred EH
Q ss_conf 05
Q gi|254780442|r 276 AT 277 (480)
Q Consensus 276 AT 277 (480)
.|
T Consensus 191 ~S 192 (246)
T PRK09248 191 GS 192 (246)
T ss_pred EC
T ss_conf 58
No 499
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=21.49 E-value=48 Score=12.64 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 39978999888889899999999999999974
Q gi|254780442|r 29 EGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60 (480)
Q Consensus 29 aG~nv~RiN~SHg~~e~~~~~i~~ir~~~~~~ 60 (480)
.|-+-+||||+ .+.+...+-+++++++-++.
T Consensus 359 ~g~g~iRl~~a-~~~e~l~eal~Rl~~~l~e~ 389 (390)
T PRK07309 359 YGEGYVRLSYA-ASMETIKEAMKRLKEYMEEH 389 (390)
T ss_pred CCCCEEEEEEE-CCHHHHHHHHHHHHHHHHHC
T ss_conf 99987999982-89999999999999999971
No 500
>COG4996 Predicted phosphatase [General function prediction only]
Probab=21.44 E-value=42 Score=13.04 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHCCCCCEEEEECCCEEECCCCCCCCEEEEE
Q ss_conf 2113365267406842210234454112455
Q gi|254780442|r 116 ASIKIGDRLLIDDGRVKLCVQEKGIGFIKCK 146 (480)
Q Consensus 116 ~~ik~Gd~I~idDG~i~l~V~~~~~~~i~c~ 146 (480)
..++|++.+++||-.+.|.-+-..-+.+.|.
T Consensus 112 ~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~ 142 (164)
T COG4996 112 QKIKPSEIVYLDDRRIHFGNIWEYLGNVKCL 142 (164)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf 5127430799825533077899862773556
Done!