HHsearch alignment for GI: 254780442 and conserved domain: pfam02896
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=96.98 E-value=0.012 Score=39.33 Aligned_cols=148 Identities=21% Similarity=0.265 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 555676556778998873488532505855773479999986200------------34335553278566311788875
Q gi|254780442|r 167 TTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ------------NKIGLMSKIEKPRAIEYASEIIQ 234 (480)
Q Consensus 167 ~l~~ltekD~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~------------~~~~IiaKIE~~~al~nl~eI~~ 234 (480)
T Consensus 116 ~~p~lf~~QlrAilrAa~~g~l~-Im~PmVt~~~E~~~~r~~~~~~~~~l~~~~~~~~~~~iG~MiEvPsaa~~~d~l~~ 194 (292)
T pfam02896 116 DYPEIFRTQLRAILRASAFGNLE-IMFPMVATVEELREAKRIIEEVKAELDKELGVDPDIKVGIMIEIPSAALLADQLAK 194 (292)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHH
T ss_conf 17076999999999987208807-98358799899999999999999999861797878418999824699995999986
Q ss_pred HHHEEEEECCCCC-----HHCC-----------HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 3312475222200-----2158-----------76736899999999851398399805767888828898403477899
Q gi|254780442|r 235 LSDAVMVARGDLG-----VEMA-----------LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA 298 (480)
Q Consensus 235 ~sDgimiaRGDLg-----~e~~-----------~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dva 298 (480)
T Consensus 195 ~~DF~SIGTNDLtQy~la~DR~n~~v~~l~d~~~Pavlr~i~~vi~~a~~~g~~vsiCGE~a~----dp-----~--~~~ 263 (292)
T pfam02896 195 EVDFFSIGTNDLTQYTLAVDRDNERVAYLYDPLHPAVLRLIKQVIRAAHRKGKWVGICGEMAG----DP-----S--AVP 263 (292)
T ss_pred HCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC----CH-----H--HHH
T ss_conf 368779644388889887435773335436999769999999999999987999998088767----98-----9--999
Q ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9985199689981444354465899999999887630
Q gi|254780442|r 299 TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAE 335 (480)
Q Consensus 299 nav~dG~D~imLs~ETa~G~yP~~~v~~~~~i~~~~E 335 (480)
T Consensus 264 ~L~~lGi~~lSv~--------p-~~i~~vk~~ir~~~ 291 (292)
T pfam02896 264 LLLGLGLDEFSMS--------P-TSVPRARALAAQIA 291 (292)
T ss_pred HHHHCCCCEEEEC--------H-HHHHHHHHHHHHHC
T ss_conf 9998799979988--------7-77999999999863