RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(480 letters)
>gnl|CDD|30817 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 505 bits (1303), Expect = e-144
Identities = 205/478 (42%), Positives = 315/478 (65%), Gaps = 7/478 (1%)
Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60
+R+ KI++TLGP++ SE+++ +L E G +V R+N SH H++ + I +R +
Sbjct: 1 ERMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKL 60
Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSD--RVMLPHPEIFASI 118
RP+ IL+DL+GPK R GKF V+L +G+ FTL D +G D RV + + ++ +
Sbjct: 61 GRPVAILLDLKGPKIRTGKFKGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDV 120
Query: 119 KIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178
K GDR+L+DDG+++L V E + +V+ G ++ KG++ P L+ ALT+KD+ED
Sbjct: 121 KPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKED 180
Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQL 235
L L+ VD+VALSF+++A+D+ E+R+I+++ + +++KIE A++ EII+
Sbjct: 181 LKFGLEQ-GVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEA 239
Query: 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS 295
SD +MVARGDLGVE+ LE +P IQK++IR AR+ GKPV+ ATQMLESM+ +P PTRAEVS
Sbjct: 240 SDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVS 299
Query: 296 DVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETG 355
DVA AV + DA+MLS ETA+G YPV+AV TM+ +A AE++ ++ R P+ +
Sbjct: 300 DVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSI 359
Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ I+ AA IAE L AI T SG T ++ RP+ IIAL+P + ARRLALVWG
Sbjct: 360 TEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWG 419
Query: 416 IHCVVTE-DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472
++ ++ E + +D+MV A ++E G K GD ++I+AG+P+GT G+TN +++ +
Sbjct: 420 VYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477
>gnl|CDD|29370 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer..
Length = 480
Score = 375 bits (964), Expect = e-104
Identities = 174/482 (36%), Positives = 273/482 (56%), Gaps = 15/482 (3%)
Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
LRR KI+ T+GP++ S + + +L + G +V R+N SH SH+ I +R ++ P
Sbjct: 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGP 60
Query: 64 IGILIDLQGPKFRVGKFAN-SKVDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKI 120
+ I +D +GP+ R G F + L G + T D G+ +++ + + + +
Sbjct: 61 VAIALDTKGPEIRTGLFKGGKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSP 120
Query: 121 GDRLLIDDGRVKLCVQEK-GIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179
G+ +L+DDG + L V K + C+V+ G + RKG++ P T + AL++KD+ DL
Sbjct: 121 GNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKADL 180
Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237
++ VD + SF++ A D+LEIR+++ + I +++KIE + EI++ SD
Sbjct: 181 RFGVEQ-GVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239
Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297
+MVARGDLGVE+ E + QK LI GKPV+ ATQMLESM+ +P PTRAEVSDV
Sbjct: 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDV 299
Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERD-SSWLEMRSLRRIEPNETGA 356
A AV + D +MLS ETA G YPV+AV+ M+ + AE+ S + +RR+ P T
Sbjct: 300 ANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTST 359
Query: 357 -DVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ ++ +A + A L AI T SG T ++ RP IIA++ QTAR+L L G
Sbjct: 360 TEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRG 419
Query: 416 IHCVVTEDA-----SDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIA 470
++ V+ E+ D+D + A + E+G K GD +++ G P+G+ GSTN +RI
Sbjct: 420 VYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGS-GSTNTMRIL 478
Query: 471 YI 472
+
Sbjct: 479 TV 480
>gnl|CDD|143979 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 316 bits (813), Expect = 6e-87
Identities = 127/340 (37%), Positives = 200/340 (58%), Gaps = 9/340 (2%)
Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
LRR KI+ T+GP++ S + + +L + G +V R+N SH SH+ I +R E +
Sbjct: 1 LRRTKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAEEKLGGL 60
Query: 64 IGILIDLQGPKFRVGKFANSKVD--LTEGQIFTLDNKDSLGSS---DRVMLPHPEIFASI 118
+ I +D +GP+ R G F + K D L G F + + + +++ + + + +
Sbjct: 61 VAIALDTKGPEIRTGLFKDGKKDIELKAGDKFLVSTDPAYKGAGDKEKIYVDYKNLTKDV 120
Query: 119 KIGDRLLIDDGRVKLCVQEKGIGF-IKCKVIAGISIADRKGISFPDTFLTTQALTQKDRE 177
G +L+DDG + L V EK + +V+ G + RKG++ P T + AL++KD+
Sbjct: 121 SPGGIILVDDGVLSLKVLEKDDDKTLVTEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKA 180
Query: 178 DLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQL 235
DL ++ VD + SF+++A D+LE+R+++ + I +++KIE + EI++
Sbjct: 181 DLRFGVKQ-GVDMIFASFVRTASDVLEVREVLGEAGKDIKIIAKIENQEGVNNFDEILEA 239
Query: 236 SDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVS 295
SD +MVARGDLG+E+ E + QK LI GKPV+ ATQMLESM+ +P PTRAEVS
Sbjct: 240 SDGIMVARGDLGIEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVS 299
Query: 296 DVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAE 335
DVA AV + D +MLS ETA G+YPV+AV+ M+ + AE
Sbjct: 300 DVANAVLDGTDCVMLSGETAKGNYPVEAVKMMARICLEAE 339
>gnl|CDD|37534 KOG2323, KOG2323, KOG2323, Pyruvate kinase [Carbohydrate transport
and metabolism].
Length = 501
Score = 289 bits (742), Expect = 8e-79
Identities = 161/463 (34%), Positives = 251/463 (54%), Gaps = 16/463 (3%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63
R+ KI+ T+GP+S S +++ +L + G ++ R+N SH SH+ E I +R A+ P
Sbjct: 21 RKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALP 80
Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKI 120
I++D +GP+ R G N K + L EGQ T D S+ + + + ++ +K
Sbjct: 81 CAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKP 140
Query: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKG-ISFPDTFLTTQALTQKDREDL 179
GD + +DDG + L V+ + C+V G + RKG ++ P T + ALT+KD +DL
Sbjct: 141 GDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDL 200
Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKII--SQNKIGLMSKIEKPRAIEYASEIIQLSD 237
++ +VD + SFI+ A D+ E+RK++ S I L+SKIE + EI+ SD
Sbjct: 201 KFGVEN-KVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIESD 259
Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297
+MVARGDLG+E+ E + QK +I GKPV+ ATQMLESM+ P PTRAE SDV
Sbjct: 260 GIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDV 319
Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRS-LRRIEPNETGA 356
A AV + AD +MLS ETA G YPV+AV+TM+ + AE + + S L
Sbjct: 320 ANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMST 379
Query: 357 -DVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ ++++A + A SAI T SG T + ++ RP + II+++ + AR+ L G
Sbjct: 380 IESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRG 439
Query: 416 IHCVVTED------ASDSDDMVNRACRIVVEQGFGKPGDRIII 452
I V+ + D + + ++G K GD +++
Sbjct: 440 IIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVV 482
>gnl|CDD|145835 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 131 bits (332), Expect = 4e-31
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ I+ +A + A+ L AI T SG T ++ RP IIA++P TARRLAL WG
Sbjct: 1 TEAIARSAVEAAKELGAKAIVVLTESGRTARLVSKYRPGAPIIAVTPNEGTARRLALYWG 60
Query: 416 IHCVVTEDASDS-DDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAY 471
+H V+ ++ S S D+++ A R+ + G K GD ++++AG+P+GT G TN L++
Sbjct: 61 VHPVLGDERSISTDEIIAEALRVAKDAGLIKKGDLVVVTAGVPVGTSGGTNTLKVIT 117
>gnl|CDD|31845 COG1659, COG1659, Uncharacterized protein, linocin/CFP29 homolog
[Function unknown].
Length = 267
Score = 33.0 bits (75), Expect = 0.20
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 339 SWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLE 396
S E+ + R + V AA+++A + Y+A+G G+ +A P L
Sbjct: 86 SRNELDDVERGSKDVDWEPV-KEAAKKLAFVEDRTIFEGYSAAGIEGILSASSNPALT 142
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 30.0 bits (67), Expect = 1.6
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 164 TFLTTQALTQKDR----EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSK 219
T + + L +D+ LH+ QT + + + ++ D + I++ + K
Sbjct: 47 TMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQ---------VGK 97
Query: 220 IEKPRAIEYASEI 232
++P+A+ YA+EI
Sbjct: 98 FKEPQAVFYAAEI 110
>gnl|CDD|32359 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 29.5 bits (66), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 253 ELIPGIQKKLIRIARQLGKPVVIA 276
E + I KKLI++ ++L KPVV
Sbjct: 712 EALKEIIKKLIKLGKKLNKPVVAT 735
>gnl|CDD|146124 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family.
This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic
acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length = 221
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 188 VDWVALSFIQSADDLLEIRKII---------SQNKIGLMSKIEKPRAIEYASEIIQLS-- 236
V + +++A++ E + L+++IE + A EI +
Sbjct: 85 AQGVLVPKVETAEEAREAVSACRYPPKGIRGANGNTCLLAQIESALGVLNADEIAAVEGL 144
Query: 237 DAVMVARGDLGVEMALELIPG 257
D V + DL ++ PG
Sbjct: 145 DGVFLGPEDLSADLGTLRSPG 165
>gnl|CDD|29356 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose
synthase involved in the biosynthesis of the
lipopolysaccharide (LPS) core precursor
ADP-L-glycero-D-manno-heptose. LPS plays an important
role in maintaining the structural integrity of the
bacterial outer membrane of gram-negative bacteria. RfaE
consists of two domains, a sugar kinase domain,
represented here, and a domain belonging to the
cytidylyltransferase superfamily..
Length = 304
Score = 29.4 bits (66), Expect = 2.5
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 EKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVI 275
E+ R IE +E + +D V+++ GV L P + + LI AR+LG PV++
Sbjct: 120 EEQRLIERIAERLPEADVVILSDYGKGV-----LTPRVIEALIAAARELGIPVLV 169
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 29.0 bits (65), Expect = 2.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 321 VDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380
R S+ +S + S ++E +SL +E +E G ++ E L L + Y+
Sbjct: 128 GKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYK-------EPLTLEDLISYSF 180
Query: 381 SGATGL 386
A G+
Sbjct: 181 QVARGM 186
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 28.6 bits (64), Expect = 4.1
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 195 FIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALEL 254
+++ +D L +R+ + + EK + L V+V G GVE+A EL
Sbjct: 125 GLKTLEDALRLRRHL-------LEAFEK---ASQEEDDRALLTIVIVGGGPTGVELAGEL 174
Query: 255 IPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEE 304
+ + L + + VI + + FP ++S A E+
Sbjct: 175 AERLHRLLKKFRVDPSELRVILVEAGPR-ILPMFP--PKLSKYAERALEK 221
>gnl|CDD|34281 COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound
transport system, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 363
Score = 28.4 bits (63), Expect = 4.7
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 17/67 (25%)
Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120
R+ I + DL+G K R+ FA GQ+ LG + + EI+ ++
Sbjct: 167 RKEINSVEDLKGLKMRIPGFA--------GQVMA-----KLGVVPQQ-IAGGEIYPAL-- 210
Query: 121 GDRLLID 127
+R ID
Sbjct: 211 -ERGTID 216
>gnl|CDD|33190 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General
function prediction only].
Length = 978
Score = 28.0 bits (62), Expect = 5.7
Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 303 EEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIE---------PNE 353
E AD +++ + +PV A S + + + L + R+ E +
Sbjct: 419 EGADLVLIIGANPTEGHPVLA----SRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPK 474
Query: 354 TGADV--ISSAARQIAETLRLSAIFC---------YTASGATGLRAARER----PKLEII 398
G D+ +++ A+ I + F Y S A E+ P ++
Sbjct: 475 PGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLR 534
Query: 399 ALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPG 447
+ MI A+ +A++WG+ VT+ + SD + +++ +G+PG
Sbjct: 535 KAAEMIAEAKSVAILWGMG--VTQHSGGSDTSTAISNLLLLTGNYGRPG 581
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 28.0 bits (62), Expect = 6.3
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEI 232
LH+ QT + + + ++ D + +I+++ + ++P A+ YA+EI
Sbjct: 66 LHSCFQTMDRLYFVMEYVNGGDLMYQIQQV---------GRFKEPHAVFYAAEI 110
>gnl|CDD|144105 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase
C, Y domain. This associates with pfam00388 to form a
single structural unit.
Length = 117
Score = 27.9 bits (63), Expect = 7.4
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 16 SSFSEDVINRLHEE-GTDVFRINMSH 40
SSFSE +L +E + N
Sbjct: 29 SSFSETKAKKLLKESPAEFVEHNRRQ 54
>gnl|CDD|146773 pfam04312, DUF460, Protein of unknown function (DUF460). Archaeal
protein of unknown function.
Length = 138
Score = 27.6 bits (62), Expect = 8.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 262 LIRIARQLGKPVVIAT 277
+I + +LGKPV++AT
Sbjct: 68 VIELIYELGKPVIVAT 83
>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members. This
group contains a structure identified as an arginate
lyase. Other members are identified quinone reductases,
alginate lyases, and other proteins related to the
zinc-dependent dehydrogenases/reductases. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H) binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 336
Score = 27.5 bits (62), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 262 LIRIARQLGKPVVIAT 277
I++A+QL VIAT
Sbjct: 166 AIQLAKQLTGLTVIAT 181
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.378
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,457,020
Number of extensions: 288157
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 45
Length of query: 480
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 382
Effective length of database: 4,146,055
Effective search space: 1583793010
Effective search space used: 1583793010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)