RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(480 letters)
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 709 bits (1832), Expect = 0.0
Identities = 283/478 (59%), Positives = 357/478 (74%), Gaps = 2/478 (0%)
Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60
M RR+KI++TLGP+S SED+I +L E G DVFR+N SH HD EL K+IR VE +
Sbjct: 1 MKRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDET 60
Query: 61 RRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKI 120
RPIGIL DLQGPK R+G+FA+ KV L GQ F LD D+ G DRV LPHPEI A++K
Sbjct: 61 GRPIGILADLQGPKLRLGRFADGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKP 120
Query: 121 GDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLH 180
GDRLL+DDG+V+L V+ + C+V+ G ++DRKG+S P T L+ ALT+KDR DL
Sbjct: 121 GDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSLPGTVLSVSALTEKDRADLE 180
Query: 181 AALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVM 240
AL+ VDWVALSF+Q +D+ E+RKII ++ +M+KIEKP+AI+ I++ SDA+M
Sbjct: 181 FALEL-GVDWVALSFVQRPEDVEEVRKII-GGRVPVMAKIEKPQAIDRLEAIVEASDAIM 238
Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300
VARGDLGVE+ LE +P IQK++IR AR+ GKPVV+ATQMLESM+ +P PTRAEVSDVATA
Sbjct: 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATA 298
Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVIS 360
V + ADA+MLSAETASG YPV+AVRTM+ + ERD ++ + +R +P T D IS
Sbjct: 299 VLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAIS 358
Query: 361 SAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVV 420
AAR IAE L L+A+ YT+SG T LRAARERP L I+AL+P +TARRLAL WG+HCVV
Sbjct: 359 YAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVV 418
Query: 421 TEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGADGLS 478
+DA D+DDMV RA RI + +GF K GDR++I AG+P GTPGSTNMLRIAYIG D +S
Sbjct: 419 VDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLRIAYIGEDDVS 476
>gnl|CDD|180277 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 457 bits (1178), Expect = e-129
Identities = 189/467 (40%), Positives = 291/467 (62%), Gaps = 13/467 (2%)
Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
LRR KI++TLGP+S S + + +L E G +V R+N SH SH++ + +R + + RP
Sbjct: 3 LRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRP 62
Query: 64 IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGD 122
+ IL+DL+GPK RVGKF K+ L G FTLD ++ G +RV + + + +K GD
Sbjct: 63 VAILLDLKGPKIRVGKFKEGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGD 122
Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
LL+DDG+++L V E ++ +V G +++ KGI+ P L+ ALT+KD+ D+ A
Sbjct: 123 ILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGINIPGGGLSLPALTEKDKADIKFA 182
Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLSDAV 239
+ VD++A+SF++SA+D+ E R+++ + +++KIE+ A++ EII+ SD +
Sbjct: 183 AEQ-GVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGI 241
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLGVE+ E +PG+QKK+IR AR+ GKPV+ ATQMLESM+ +P PTRAEVSDVA
Sbjct: 242 MVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVAN 301
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359
AV + DA+MLS ETA+G YPV+AV M+ + AE++ S +L + + +
Sbjct: 302 AVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFS----INLSKHRLDRQFDRID 357
Query: 360 SSAARQIAETLRLS----AIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ A AI T SG T +R RP I A++ +T RRLAL G
Sbjct: 358 EAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRG 417
Query: 416 IHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462
++ V+ + A+D+DD A R+++E+G + GD +++++G P+GT G
Sbjct: 418 VYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGDPMGTAG 464
>gnl|CDD|162184 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars.
Length = 473
Score = 438 bits (1129), Expect = e-123
Identities = 177/474 (37%), Positives = 290/474 (61%), Gaps = 10/474 (2%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64
RR KI+ T+GP++ S +++ +L + G +V R+N SH SH++ + I+ +R + RP+
Sbjct: 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPV 60
Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQ--IFTLDNKDSLGSSDRVMLPHPEIFASIKIGD 122
IL+D +GP+ R G+ V L +G I T D+ G + V + + + + GD
Sbjct: 61 AILLDTKGPEIRTGEIKGGPVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGD 120
Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
++L+DDG++ L V + C+V+ G ++ +KG++ P + AL++KD++DL
Sbjct: 121 KILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFG 180
Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNK---IGLMSKIEKPRAIEYASEIIQLSDAV 239
++ VD VA SF+++A+D+LE+R+++ + + +++KIE ++ EI + SD +
Sbjct: 181 VEQ-GVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLGVE+ E +P QKK+IR + GKPV+ ATQML+SM+ +P PTRAEVSDVA
Sbjct: 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVAN 299
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNE--TGAD 357
A+ + DA+MLS ETA G YPV+AV+ M+ +A AE+ ++L + R+ + T +
Sbjct: 300 AILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITE 359
Query: 358 VISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIH 417
I+ +A + AE L AI T SG T ++ RP IIA++P + AR+LAL WG+
Sbjct: 360 AIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVF 419
Query: 418 CVVTED-ASDSDDMVNRACRIVVEQGFGKPGDRII-ISAGLPLGTPGSTNMLRI 469
+ ++ SD++ VN+A ++ E+G K GD ++ I G P+G G TN +R+
Sbjct: 420 PFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTIRV 473
>gnl|CDD|180540 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 437 bits (1127), Expect = e-123
Identities = 199/475 (41%), Positives = 306/475 (64%), Gaps = 7/475 (1%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64
RR KI++T+GP+S S + + +L E G R+N SH H++ IK IR + + +
Sbjct: 8 RRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTV 67
Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRL 124
GIL DLQGPK R+G+F + ++L G F L +++ LG+ ++ + + + + +G R+
Sbjct: 68 GILQDLQGPKIRLGRFEDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRI 127
Query: 125 LIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
L+DDG ++L V+E K G + CKV+ G ++++KG++FP L+ A+T+KDREDL
Sbjct: 128 LLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVNFPGVSLSLPAITEKDREDLIFG 187
Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLSDAV 239
L+ VDW+ALSF+++ D+LEIR++I ++ I +++KIEK AI+ I++L D +
Sbjct: 188 LEQ-GVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGL 246
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLGVE+ E +P +QK+LI+ A +LGKPV+ ATQML+SM +P PTRAE SDVA
Sbjct: 247 MVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVAN 306
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359
A+ + DA+MLS ETA+G YPV+AV+TM+ +A E+D + ++ S R E T + I
Sbjct: 307 AILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRP-EFTTTITNAI 365
Query: 360 SSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCV 419
S A IA L +AI T SGAT ++ RPK I+A++P ARRL LVWG+ +
Sbjct: 366 SQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPL 425
Query: 420 VTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIGA 474
+ DA +D+ + A + E G K GD ++I+AG +G GST+++++ +GA
Sbjct: 426 LVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESGSTDLMKVHVVGA 480
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 303 bits (779), Expect = 5e-83
Identities = 156/474 (32%), Positives = 256/474 (54%), Gaps = 23/474 (4%)
Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
+++ KI+ T+GP + SE+++ +L + G +V R+N SH + + + IK +R V ++ +
Sbjct: 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKK 60
Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLDNKDS-LGSSDRVMLPHPEIFASIKIG 121
IL+D +GP+ R K V L GQ FT S +G+ +RV + + A + +G
Sbjct: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVG 120
Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181
+ +L+DDG + + V + CKV+ + + KG++ P + AL +KD++DL
Sbjct: 121 NTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180
Query: 182 ALQTCE--VDWVALSFIQSADDLLEIRKIISQN---KIGLMSKIEKPRAIEYASEIIQLS 236
CE VD+VA SFI+ D+LEIR+ + + I ++SKIE + EI++ S
Sbjct: 181 G---CEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEAS 237
Query: 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296
D +MVARGDLGVE+ +E + QK +I + K V+ ATQML+SM+ +P PTRAE D
Sbjct: 238 DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGD 297
Query: 297 VATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNE-TG 355
VA A+ + DA+MLS E+A G YP++AV M A+ ER + R + +
Sbjct: 298 VANAILDGTDAVMLSGESAKGKYPLEAVSIM---ATICERTDRVMNSRLESNNDNRKLRI 354
Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARE----RPKLEIIALSPMIQTARRLA 411
+ + A + AE L I T G ++AR P I+AL+ +TAR+L
Sbjct: 355 TEAVCRGAVETAEKLDAPLIVVATQGG----KSARSVRKYFPDATILALTTNEKTARQLV 410
Query: 412 LVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTN 465
L G+ + ++ + +DD + ++ G + GD +++ +G L G+TN
Sbjct: 411 LSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSG-ALVPSGTTN 463
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 288 bits (738), Expect = 3e-78
Identities = 148/472 (31%), Positives = 248/472 (52%), Gaps = 7/472 (1%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63
++ I+ T+GP+ + + + +L + G ++ R N SH H+ + + +R A + R
Sbjct: 38 KKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNAN 97
Query: 64 IGILIDLQGPKFRVGKFANSK-VDLTEGQIFTL-DNKDSLGSSDRVMLPHPEIFASIKIG 121
+GIL+D +GP+ R G N K + L EGQ + + LG + + ++ S+K+G
Sbjct: 98 LGILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVG 157
Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181
+ +LI DG + V E +I KV+ +I +RK ++ P + + +KD+ D+
Sbjct: 158 NIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILN 217
Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSDAV 239
D++ALSF+QSADD+ R+++ + I ++ KIE + EI+ SD +
Sbjct: 218 FAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGI 277
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLG+E+ E + QK +I GKPV+ ATQMLESM+ +P PTRAE +DVA
Sbjct: 278 MVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVAN 337
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEMRSLRRIEPNETGAD 357
AV + D +MLS ETA+G +PV+AV M+ + AE D L + + +
Sbjct: 338 AVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQE 397
Query: 358 VISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIH 417
++ +A + AE + I T +G T ++ RP I+ALS + L++ G+
Sbjct: 398 AVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVT 457
Query: 418 CVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469
V +D ++ A + E+G + GD I G+ GS+N++++
Sbjct: 458 TYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKV 509
>gnl|CDD|178230 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 260 bits (666), Expect = 5e-70
Identities = 155/454 (34%), Positives = 254/454 (55%), Gaps = 12/454 (2%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSH---TSHDKMCELIKKIRAVELRSR 61
R+ KI+ T+GPS+ + ++I +L E G +V R+NMSH SH K+ +L+K+ A
Sbjct: 110 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA--QSKD 167
Query: 62 RPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIG 121
I I++D +GP+ R G + L EGQ FT K + + D V + + + +++G
Sbjct: 168 NVIAIMLDTKGPEVRSGDLPQP-IMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVG 226
Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181
D LL+D G + L V+ K +KC+V+ G + R+ ++ T ++T+KD ED+
Sbjct: 227 DMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKF 286
Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKII--SQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239
++ +VD+ A+SF++ A + E++ + I ++ KIE +I II SD
Sbjct: 287 GVEN-KVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGA 345
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLG E+ +E +P +Q+++IR R +GKPV++AT MLESM+ P PTRAEVSD+A
Sbjct: 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAI 405
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRS-LRRIEPNETGADV 358
AV E ADA+MLS ETA G +P+ AV+ M VA E L + N ++
Sbjct: 406 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMS-EM 464
Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
+ A +A TL ++I +T +G + + RP I A + + +RLAL G+
Sbjct: 465 FAFHATMMANTLG-TSIIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCP 523
Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIII 452
+ + + D+++ RA +++ +G K G+ + +
Sbjct: 524 IYMQFSDDAEETFARALSLLLNKGMVKEGEEVAL 557
>gnl|CDD|178080 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 254 bits (652), Expect = 3e-68
Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 35/482 (7%)
Query: 1 MVNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60
+ + KI+ TLGP+S S ++ +L G +V R N SH SH+ E + +R +
Sbjct: 17 GLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANT 76
Query: 61 RRPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLDNKDSL-GSSDRVMLPHPEIFASI 118
+++D +GP+ R G + K V L +GQ T+ S+ G + + + + ++ +
Sbjct: 77 GILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDV 136
Query: 119 KIGDRLLIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDR 176
K G +L DG + L V G ++C+ + +RK ++ P + LT+KD+
Sbjct: 137 KPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDK 196
Query: 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ--NKIGLMSKIEKPRAIEYASEIIQ 234
ED+ ++D++ALSF++ DL+E+RK++ + I L+SK+E ++ +I+
Sbjct: 197 EDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256
Query: 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEV 294
SDA MVARGDLG+E+ +E I QK +I GKPVV ATQMLESM+ SP PTRAE
Sbjct: 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEA 316
Query: 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEMRSLRR---- 348
+DVA AV + D +MLS ETA+G+YP AV+TM+ + AE D L +R
Sbjct: 317 TDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLP 376
Query: 349 IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS-PMIQT- 406
+ P E+ A SSA R A ++ S I T G T A+ RP + I+++ P I T
Sbjct: 377 MSPLESLA---SSAVRT-ANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTD 432
Query: 407 -----------ARRLALVWGIHCVVTE------DASDSDDMVNRACRIVVEQGFGKPGDR 449
AR + G+ V+ E D+ +++++ A ++G KPGD
Sbjct: 433 SFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDS 492
Query: 450 II 451
++
Sbjct: 493 VV 494
>gnl|CDD|178362 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 246 bits (631), Expect = 7e-66
Identities = 147/470 (31%), Positives = 251/470 (53%), Gaps = 22/470 (4%)
Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62
+ RR K++ T+GP+ + + L G +V R+NM H + + ++I+++R +
Sbjct: 23 STRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGF 82
Query: 63 PIGILIDLQGPKFRVGKF-ANSKVDLTEGQIFTLDNKDSLGS-SDRVMLPHPEIFAS-IK 119
+ +++D +G + +G S +G+ +T + GS + + + + FA +K
Sbjct: 83 AVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVK 142
Query: 120 IGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISF-PDTFLTTQ------ALT 172
+GD L++D G V+ V EK +KCK + R ++F D L + ++
Sbjct: 143 VGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTIS 202
Query: 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN----KIGLMSKIEKPRAIEY 228
KD D+ + VD++A+SF++SA+ + ++ I+ IG+++KIE +++
Sbjct: 203 SKDWLDIDFGISE-GVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKN 261
Query: 229 ASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPF 288
EII+ SD MVARGDLG ++ LE +P +Q+K++R+ RQL KPV++A+Q+LESM+ P
Sbjct: 262 LEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPT 321
Query: 289 PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDS------SWLE 342
PTRAEV+DV+ AV + ADA+MLS E+A G YP A+ + V+ E S LE
Sbjct: 322 PTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALE 381
Query: 343 MRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSP 402
+ L + ++ +SAA ++A L + AIF YT G +R RP I A +
Sbjct: 382 LPQLSSSLSDRISEEICNSAA-KMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTD 440
Query: 403 MIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIII 452
RRL L WG+ + + D + +N+ ++ +G K GD +I
Sbjct: 441 TTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSGDLVIA 490
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated.
Length = 352
Score = 240 bits (613), Expect = 6e-64
Identities = 124/332 (37%), Positives = 204/332 (61%), Gaps = 8/332 (2%)
Query: 7 IKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGI 66
I I T+GP+S +++ + +L G + R+N+SH +H+ ++I+ +++++ I I
Sbjct: 3 IDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD----DSIKI 58
Query: 67 LIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRLLI 126
L D+QGPK R+G+ ++ L G F L + GSS + + I +K+G R+L+
Sbjct: 59 LGDVQGPKIRLGEIKGEQITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILM 118
Query: 127 DDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTC 186
+DG V+L V++ I+ KV G +I+ KG++ P + A+T+KD++D+ L+
Sbjct: 119 NDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGAIVRLPAITEKDKKDIQFLLEE- 177
Query: 187 EVDWVALSFIQSADDLLEIRKIISQNKI---GLMSKIEKPRAIEYASEIIQLSDAVMVAR 243
+VD++A SF++ + EIR I Q K L++KIE AIE +I + +D +M+AR
Sbjct: 178 DVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIAR 237
Query: 244 GDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFE 303
GDLGVE+ + IP +QK +I+ + V+ ATQML+SMV PTRAEV+DV AV +
Sbjct: 238 GDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLD 297
Query: 304 EADAIMLSAETASGSYPVDAVRTMSLVASSAE 335
+A+MLSAE+ASG +P+++V T+ LV+ AE
Sbjct: 298 GTNAVMLSAESASGEHPIESVSTLRLVSEFAE 329
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 221 bits (565), Expect = 3e-58
Identities = 139/434 (32%), Positives = 223/434 (51%), Gaps = 16/434 (3%)
Query: 33 VFRINMSHTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQI 92
V R+N SH SH+ I +R I I +D +GP+ R G F + + G
Sbjct: 3 VARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEAVMERGAT 62
Query: 93 FTLDNKDSL---GSSDRVMLPHPEIFASIKIGDRLLIDDGRVKLCVQEKGIGF-IKCKVI 148
+ + G+ D+ + + + ++ G + IDDG + L VQ +KC V
Sbjct: 63 CYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVT 122
Query: 149 AGISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKI 208
+I+DR+G++ P + A++ KD DL ++ VD + SFI+SA+ + E+RK
Sbjct: 123 NAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ-GVDMIFASFIRSAEQVGEVRKA 181
Query: 209 ISQ--NKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIA 266
+ I ++ KIE + ++ II+ SD +MVARGDLGVE+ E + QK LI
Sbjct: 182 LGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKC 241
Query: 267 RQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRT 326
GKPV+ ATQMLESM +P PTRAEVSDVA AVF AD +MLS ETA G YP + V+
Sbjct: 242 NVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQY 301
Query: 327 MSLVASSAERD-SSWLEMRSLRRIEPNETGAD--VISSAARQIAETLRLSAIFCYTASGA 383
M+ + A+ + ++ S+++++P A+ V SSA + ET + A+ + +G
Sbjct: 302 MARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYET-KAKALVVLSNTGR 360
Query: 384 TGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTE-----DASDSDDMVNRACRIV 438
+ A+ RP I+ ++ +QT R+L + G+ V + + V
Sbjct: 361 SARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAERLGHDEGKEQRVAMGVGFA 420
Query: 439 VEQGFGKPGDRIII 452
+G+ + GD +++
Sbjct: 421 KSKGYVQSGDLMVV 434
>gnl|CDD|181277 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 182 bits (464), Expect = 2e-46
Identities = 123/350 (35%), Positives = 174/350 (49%), Gaps = 42/350 (12%)
Query: 3 NLRRIKIISTLGPSSFSED--VINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRS 60
RR +I+ TL PS ++D + RL E G D RIN +H +I +R E +
Sbjct: 131 AARRTRIMVTL-PSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERAT 189
Query: 61 RRPIGILIDLQGPKFRVGKFANS--KVDLTEGQIFTLDNKDSLGSSD----RVMLPHPEI 114
R IL+DL GPK R G A K L G L + D +V PEI
Sbjct: 190 GRRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEI 249
Query: 115 FASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIA----GISIADRKGISFPDTFLTTQA 170
A + +G R+ IDDG++ V+ G G +V G+ + KG++FPDT L A
Sbjct: 250 LARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPA 309
Query: 171 LTQKDREDL-----HAALQTCEVDWVALSFIQSADDL------LEIRKIISQNKIGLMSK 219
LT+KDR DL HA D V SF+QS D+ L R+ K+GL+ K
Sbjct: 310 LTEKDRADLDFVARHA-------DLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLK 362
Query: 220 IEKPRAIEYASEII-----QLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVV 274
IE PRA+ E+I + VM+ARGDL VE+ E + +Q++++ + PV+
Sbjct: 363 IETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVI 422
Query: 275 IATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAV 324
ATQ+LE +V P+RAE++D A A A+ +ML+ G Y V+AV
Sbjct: 423 WATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAV 466
>gnl|CDD|178365 PLN02765, PLN02765, pyruvate kinase.
Length = 526
Score = 172 bits (439), Expect = 1e-43
Identities = 124/489 (25%), Positives = 237/489 (48%), Gaps = 54/489 (11%)
Query: 8 KIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIGIL 67
KI+ TLGP S S +VI + G V R + S + E ++ ++ +++ ++
Sbjct: 31 KIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVM 90
Query: 68 IDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGDRLLI 126
+D GP+ +V + L G TL ++ SS+ + + P + ++K GD + +
Sbjct: 91 LDTVGPELQVINKTEKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFV 150
Query: 127 --------DDGRVKLCVQEKGIGFIKCKV-----IAGISI---ADRKGISFPDTFLTTQA 170
+ V L V E + C V +AG + I P
Sbjct: 151 GQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLAGSLFTLHVSQVRIDLP-------T 203
Query: 171 LTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGL-----MSKIEKPRA 225
L++KD+E + ++D+++LS+ + A+D+ E R+ +S +GL +KIE
Sbjct: 204 LSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLS--SLGLSQTQIFAKIENVEG 261
Query: 226 IEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVT 285
+ + EI+Q +D ++++RG+LG+++ E + QK + GKP V+ T++++SM
Sbjct: 262 LTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTD 320
Query: 286 SPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAER--DSSWLEM 343
+ PTRAE +DVA AV + ADAI+L AET G YPV+ + T+ + + AE+ +
Sbjct: 321 NLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFK 380
Query: 344 RSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS-P 402
++++ + + + I+S+A + A ++ S I +T+SG A+ RP + ++++ P
Sbjct: 381 KTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIP 440
Query: 403 MIQT------------ARRLALVWGIHCVV--TEDASDSDDMVNRACRIVV-----EQGF 443
++T AR+ +V G+ ++ +++S N + V G
Sbjct: 441 RLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGV 500
Query: 444 GKPGDRIII 452
K DR+++
Sbjct: 501 IKSHDRVVV 509
>gnl|CDD|184806 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 138 bits (349), Expect = 4e-33
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 22/230 (9%)
Query: 112 PEIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIA----GISIADRKGISFPDTFLT 167
PE F + ++G+R+ DDG++ V + ++ ++ G + KGI+ PD+ L
Sbjct: 367 PEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLP 426
Query: 168 TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQ---NKIGLMSKIEKPR 224
ALT KD EDL + D VALSF++S +D+ + + + + +G++ KIE R
Sbjct: 427 LPALTDKDLEDLAFVAKHA--DIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRR 484
Query: 225 AIEYASEIIQLSD------AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQ 278
A E I+ L VM+ARGDL VE+ E + +Q++++ + PV+ ATQ
Sbjct: 485 AFENLPRIL-LEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQ 543
Query: 279 MLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMS 328
+LES+ P+RAE++D A A+ A+ +ML+ G + V+AVR +
Sbjct: 544 VLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLD 587
Score = 55.0 bits (133), Expect = 4e-08
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 5 RRIKIISTLGPSSFSED--VINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62
R +I+ TL P+ ++D ++ RL G D+ RIN +H + +I +R E R
Sbjct: 139 RPTRIMVTL-PTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGR 197
Query: 63 PIGILIDLQGPKFRVGKFA-NSKV-------DLTEGQIFTL---------DNKDSLGSSD 105
I +DL GPK R G A +V D G++ T S
Sbjct: 198 RCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDAL-GRVLTPARLWLTASESPPPSPPPGP 256
Query: 106 RVMLPHPEIFASIKIGDRLLIDDGR 130
+ PE A ++ GD L D R
Sbjct: 257 VGLPVDPEWLARLEPGDELRFTDAR 281
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This family
of proteins found in operons encoding phosphonate C-P
lyase systems as is observed in E. coli and is a member
of the metallo-beta-lactamase superfamily (pfam00753).
As defined by this model, all instances of this protein
are associated with the C-P lyase, but not all genomes
containing the C-P lyase system contain phnP.
Length = 238
Score = 32.0 bits (73), Expect = 0.32
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 413 VWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLP 457
V+G CV + A + D + C V+E G R +I AGL
Sbjct: 6 VYGCDCVACQRARRNPDYRRQPCSAVIEFN----GARTLIDAGLT 46
>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.
Length = 272
Score = 31.1 bits (71), Expect = 0.60
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 262 LIRIARQLGKPV-----VIATQMLESMV--TSPFPTRAEV 294
LIR AR GK V VIA Q +E V T P+ +
Sbjct: 224 LIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELI 263
>gnl|CDD|179031 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 31.0 bits (71), Expect = 0.70
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 253 ELIPGIQKKLIRIARQLGKPVVIAT 277
E + I K LI + ++L KPVV AT
Sbjct: 710 EELKEIIKNLIELGKKLNKPVV-AT 733
>gnl|CDD|162340 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. The N-terminal region of about 200
amino acids is rich in low-complexity sequence, poorly
alignable, and not included n this model.
Length = 1213
Score = 30.4 bits (69), Expect = 0.96
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 253 ELIPGIQKKLIRIARQLGKPVVIA 276
E + I KKLI +A++L KPVV
Sbjct: 481 EALKEIIKKLIELAKELNKPVVAT 504
>gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein;
Provisional.
Length = 250
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 413 VWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLP 457
V+G C A R C ++E G R +I AGLP
Sbjct: 16 VFGCECAACARARRDPAYRRRPCSALIEFN----GARTLIDAGLP 56
>gnl|CDD|173557 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 29.9 bits (67), Expect = 1.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 419 VVTEDA----SDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLG 459
++T D+ DS D V RAC+ +P R + PLG
Sbjct: 296 ILTTDSYYIPYDSGDGVERACKT------RRPSRRYYFTNYGPLG 334
>gnl|CDD|179249 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 28.9 bits (66), Expect = 2.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 240 MVARGDLGVEMALELIP 256
M A+G LG+E+ L+ +P
Sbjct: 276 MAAKGGLGIELDLDKVP 292
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302.
Length = 475
Score = 28.7 bits (64), Expect = 3.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 6 RIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPIG 65
R++I + +G + L + G DV I+ +H KM IK +RA++L G
Sbjct: 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG 272
Query: 66 ILIDLQG 72
++ +G
Sbjct: 273 NVVSAEG 279
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 28.3 bits (64), Expect = 4.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 25 RLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELR 59
L E G DV ++ +H +KM E ++ +RA++
Sbjct: 234 ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPG 268
>gnl|CDD|129389 TIGR00288, TIGR00288, conserved hypothetical protein TIGR00288.
This family of orthologs is restricted to but universal
among the completed archaeal genomes so far. Eubacterial
proteins showing at least local homology include slr1870
from Synechocystis PCC6803 and two proteins from Aquifex
aeolicusr, none of which is characterized.
Length = 160
Score = 27.9 bits (62), Expect = 6.1
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 28/98 (28%)
Query: 201 DLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAV-------MVARGDLGVEM--- 250
DL EIR+I+S+ G + KI K +YAS+ +L +AV ++ GD+ V M
Sbjct: 42 DLDEIREILSE--YGDI-KIGKVLLNQYASD--KLIEAVVNQGFEPIIVAGDVDVRMAVE 96
Query: 251 ALELI--PGIQ-----------KKLIRIARQLGKPVVI 275
A+ELI P I +I A++ GK ++
Sbjct: 97 AMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIV 134
>gnl|CDD|131897 TIGR02850, spore_sigG, RNA polymerase sigma-G factor. Members of
this family comprise the Firmicutes lineage endospore
formation-specific sigma factor SigG. It is also
desginated stage III sporulation protein G (SpoIIIG).
This protein is rather closely related to sigma-F
(SpoIIAC), another sporulation sigma factor.
Length = 254
Score = 27.5 bits (61), Expect = 7.3
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 263 IRIARQLGKPVVIATQMLESMV--TSPFPTRAEVSDVATAVFEEA----DAIMLSAETAS 316
IR++R L A Q+ + ++ S PT +E++ EE DAI + S
Sbjct: 109 IRVSRSLRDIAYKALQVRDKLISENSKEPTVSEIAKELKVPQEEVVFALDAIQ---DPVS 165
Query: 317 GSYPV-----DAVRTMSLVASSAERDSSWLEMRSLR 347
P+ D + M ++ +DS WLE +L+
Sbjct: 166 LFEPIYNDGGDPIYVMDQISDEKNKDSQWLEGIALK 201
>gnl|CDD|178877 PRK00117, recX, recombination regulator RecX; Reviewed.
Length = 157
Score = 27.5 bits (62), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 169 QALTQK--DREDLHAALQTCEVDWVAL 193
Q L QK DRE + AL ++DW L
Sbjct: 83 QELRQKGVDREIIEEALAELDIDWEEL 109
>gnl|CDD|163429 TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family.
Rfam model RF00080 describes a structured RNA element
called the yybP-ykoY leader, or SraF, which may precede
one or several genes in a genome. Members of this highly
hydrophobic protein family commonly are preceded by a
yybP-ykoY leader, which may serve as a riboswitch. From
the larger group of TerC homologs (pfam03741), this
subfamily contains protein YjbE from Bacillus subtilis.
A transport function is proposed.
Length = 176
Score = 27.5 bits (62), Expect = 8.1
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALS----PMIQTARRLA 411
A VI+ AAR + R AIF TA GA LR L +A+ P ++ L
Sbjct: 17 AVVIALAARNLPAHQRKKAIFWGTA-GAIVLRIL-----LTAVAVYLLAIPFLKLIGGLL 70
Query: 412 LVW-GIHCVVTEDASDSDD 429
L+W G ++ E+ D
Sbjct: 71 LLWIGWKLLLEEEEEQGGD 89
>gnl|CDD|129668 TIGR00578, ku70, ATP-dependent DNA helicase ii, 70 kDa subunit
(ku70). Proteins in this family are involved in
non-homologous end joining, a process used for the
repair of double stranded DNA breaks. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). Cutoff does not
detect the putative ku70 homologs in yeast.
Length = 584
Score = 27.6 bits (61), Expect = 8.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 15 PSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62
S F D+I +E V K+ +L++K+RA E R R
Sbjct: 189 ISLFYRDIITDAEDEDLGVH-----PEESSKLEDLLRKVRAKETRKRA 231
>gnl|CDD|115292 pfam06622, SepQ, SepQ protein. This family consists of several
enterobacterial SepQ proteins from Escherichia coli and
Citrobacter rodentium. The function of this family is
unclear.
Length = 305
Score = 27.3 bits (60), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 409 RLALVWGIHCVVTEDASDSDD----MVNRACRIVVEQGFGKPGDRIII 452
+L ++W IH + ED + DD M+N+ V+E G+ +II
Sbjct: 91 KLMILWAIHAALPEDDASVDDVQFTMLNKDIYPVIENNNGENRLNVII 138
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.
Length = 1490
Score = 27.2 bits (60), Expect = 8.9
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 339 SWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEII 398
W +R+L R N + S AR R ++ S + ++
Sbjct: 1227 IWAPLRALTRSSSNARTSTRRSHRAR------RGRPVYAQPVSPRVSYNTPNLAGRWSLL 1280
Query: 399 ALSPMIQTARRLALVWGI---HCVVTEDASDSDDM 430
+ P+ T R LAL + + +++ A ++++
Sbjct: 1281 QVEPLNDTERMLALAENMLDRYGIISRQAVIAENI 1315
>gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and
related mammalian proteins. Pex26 is a type II
peroxisomal membrane protein which recruits Pex6-Pex1
complexes to peroxisomes. Mutations in Pex26 can lead to
human disorders.
Length = 309
Score = 27.3 bits (60), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 178 DLHAALQTCEVDWVALSFIQSADD 201
D HAAL+TCE W +L A++
Sbjct: 50 DFHAALETCERAWQSLDSFAEAEE 73
>gnl|CDD|179666 PRK03881, PRK03881, hypothetical protein; Provisional.
Length = 467
Score = 27.1 bits (61), Expect = 9.5
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 235 LSDAVMV-----ARGDLG------VEMALELIPGIQKKLIRIARQLGKPVVIATQMLES 282
DAV + +GDLG V + + + +++ A++ G PVV + L
Sbjct: 59 FRDAVAISDGPRLKGDLGRFGAPEVSFSFKNDLELVEEIAEEAKKEGIPVVEVDEELAR 117
>gnl|CDD|185470 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 27.3 bits (61), Expect = 9.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 195 FIQSADDLLEIRKIISQNKIGLMSK 219
F+ + DDL E++ +I +NK+ ++
Sbjct: 88 FVFTKDDLFEVKPVILENKVPAPAR 112
>gnl|CDD|184330 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 27.3 bits (61), Expect = 9.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 207 KIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGD---------LGVEMALELIPG 257
+ I + KI L++K+ IE EII V + R + E A LIP
Sbjct: 65 ENIPEGKIVLLNKVP---GIERMEEIIVDGAVVGIIRYNEKKHRWKIIPRPEGARRLIPT 121
Query: 258 IQKKLIRI 265
+KK I +
Sbjct: 122 AKKKFIVV 129
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.135 0.378
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,755,322
Number of extensions: 515043
Number of successful extensions: 1328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 54
Length of query: 480
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,898,497
Effective search space: 1493124351
Effective search space used: 1493124351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)