RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(480 letters)
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 490 bits (1263), Expect = e-139
Identities = 141/471 (29%), Positives = 247/471 (52%), Gaps = 9/471 (1%)
Query: 4 LRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRP 63
+++ KI+ T+GP + SE+++ ++ + G +V R+N SH + + + I+ +R V ++ +
Sbjct: 1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60
Query: 64 IGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIG 121
IL+D +GP+ R K + V L GQ FT +K +G+S+ V + + + +G
Sbjct: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120
Query: 122 DRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHA 181
+ +L+DDG + + V + CKV+ + + KG++ P + AL +KD++DL
Sbjct: 121 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180
Query: 182 ALQTCEVDWVALSFIQSADDLLEIRKIISQNK---IGLMSKIEKPRAIEYASEIIQLSDA 238
+ VD+VA SFI+ D++EIR+ + + I ++SKIE + EI++ SD
Sbjct: 181 GCE-QGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDG 239
Query: 239 VMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVA 298
+MVARGDLGVE+ +E + QK +I + K V+ AT ML+SM+ +P PT AE DVA
Sbjct: 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVA 299
Query: 299 TAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADV 358
A+ + DA+MLS E+A G YP++AV M+ + +R +
Sbjct: 300 NAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR--VMNSRLEFNNDNRKLRITEA 357
Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
+ A + AE L I T G + + P I+AL+ +TA +L L G+
Sbjct: 358 VCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVP 417
Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469
+ ++ + +DD + ++ G GD +++ +G + G+TN +
Sbjct: 418 QLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVP-SGTTNTASV 467
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, ATP-binding, glycolysis, magnesium,
metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A
3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A
Length = 499
Score = 474 bits (1221), Expect = e-134
Identities = 147/483 (30%), Positives = 243/483 (50%), Gaps = 15/483 (3%)
Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRR 62
N R +II T+GPS+ S + + L + G V R+N SH SH+ I +R
Sbjct: 18 NYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGV 77
Query: 63 PIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSL---GSSDRVMLPHPEIFASIK 119
I I +D +GP+ R G+F + G + + G+ D+ + + + ++
Sbjct: 78 NIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVR 137
Query: 120 IGDRLLIDDGRVKLCVQE-KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178
G+ + IDDG + L VQ + ++C V +I+DR+G++ P + A++ KDR D
Sbjct: 138 PGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVD 197
Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLS 236
L ++ VD + SFI+SA+ + ++RK + I ++ KIE + ++ II+ S
Sbjct: 198 LQFGVE-QGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEES 256
Query: 237 DAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSD 296
D +MVARGDLGVE+ E + QK LI GKPV+ ATQMLESM +P PTRAEVSD
Sbjct: 257 DGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSD 316
Query: 297 VATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERD-SSWLEMRSLRRIEPN-ET 354
VA AVF AD +MLS ETA G YP + V+ M+ + A+ + ++ S+++++ +
Sbjct: 317 VANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMS 376
Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVW 414
+ + S+A + A+ + +G + A+ RP I+ ++ +QT R+L +
Sbjct: 377 ADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQ 436
Query: 415 GIHCVVTE-----DASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRI 469
G+ V + + V +G+ + GD ++ G N RI
Sbjct: 437 GVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHA-DHKVKGYANQTRI 495
Query: 470 AYI 472
+
Sbjct: 496 LLV 498
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 453 bits (1167), Expect = e-128
Identities = 161/483 (33%), Positives = 253/483 (52%), Gaps = 14/483 (2%)
Query: 2 VNLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRS 60
V R+ +II T+GPS + + + L ++G V R+N SH H+ + ++ IR A + R
Sbjct: 49 VTQRKTQIICTIGPSCNNVESLIGLIDKGMSVARLNFSHGDHESHFKTLQNIREAAKARP 108
Query: 61 RRPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASI 118
+GI++D +GP+ R G K ++L GQ + + LG+S+ + + + S+
Sbjct: 109 HSTVGIMLDTKGPEIRTGMLEGGKPIELKAGQTLKITTDYSMLGNSECISCSYSLLPKSV 168
Query: 119 KIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDRED 178
+IG +LI DG + V E G FI CKV+ ++I +RK ++ P + + KDR D
Sbjct: 169 QIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMNLPGCKVHLPIIGDKDRHD 228
Query: 179 LHAALQTCEVDWVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYA 229
+ +D++ALSF+Q+ D+ R+IIS+N I ++SKIE +
Sbjct: 229 IVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINF 288
Query: 230 SEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFP 289
I SD +MVARGDLG+E+ E I QK +I GKPVV ATQMLESM+ S P
Sbjct: 289 DSICSESDGIMVARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRP 348
Query: 290 TRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR- 348
TRAE++DVA AV + +D +MLS ETA+G++P DAV MS V + AE + +
Sbjct: 349 TRAEMTDVANAVLDGSDCVMLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHS 408
Query: 349 -IEPNETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTA 407
+ + I+ +A + A + I T +G T ++ RP IIA + + A
Sbjct: 409 SVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVA 468
Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNML 467
R L + G+ V S+ +++ A + E+ + GD I G+ PGS N++
Sbjct: 469 RGLKIARGVKTYVLNSIHHSEVVISNALALAKEESLIESGDFAIAVHGVKESCPGSCNLM 528
Query: 468 RIA 470
+I
Sbjct: 529 KIV 531
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics
consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Length = 520
Score = 449 bits (1157), Expect = e-127
Identities = 155/474 (32%), Positives = 253/474 (53%), Gaps = 6/474 (1%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSRRP 63
++ I+ TLGP+ S + + +L + G D+ R N SH SH+ E+ + A ELR
Sbjct: 46 KKTHIVCTLGPACKSVETLVKLIDAGMDICRFNFSHGSHEDHKEMFNNVLKAQELRPNCL 105
Query: 64 IGILIDLQGPKFRVGKFANSKVDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIKIGD 122
+G+L+D +GP+ R G N +V L EG L + + LG + + ++ S+K G+
Sbjct: 106 LGMLLDTKGPEIRTGFLKNKEVHLKEGSKLKLVTDYEFLGDETCIACSYKKLPQSVKPGN 165
Query: 123 RLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
+LI DG V V E + +V+ I +RK ++ P+ + +++KD+ D+
Sbjct: 166 IILIADGSVSCKVLETHEDHVITEVLNSAVIGERKNMNLPNVKVDLPIISEKDKNDILNF 225
Query: 183 LQTCEVDWVALSFIQSADDLLEIRKIISQNK--IGLMSKIEKPRAIEYASEIIQLSDAVM 240
+++A SFIQSADD+ IR ++ I ++ KIE I + +I+ SD +M
Sbjct: 226 AIPMGCNFIAASFIQSADDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIM 285
Query: 241 VARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATA 300
+ARGDLG+E++ E + QK +I GKP++ ATQMLESM +P PTRAEV+DVA A
Sbjct: 286 IARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANA 345
Query: 301 VFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEM--RSLRRIEPNETGADV 358
V + D +MLS ETA G +PV+AV MS + AE + + + IE + +
Sbjct: 346 VLDGTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEA 405
Query: 359 ISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
++ +A + AE+++ S I T +G T A+ +P I+ALS T + L + G+ C
Sbjct: 406 VARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRGVTC 465
Query: 419 VVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472
+ +D ++ A I ++ K GD +I G+ G TN++++ I
Sbjct: 466 IKVGSFQGTDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEEVSGGTNLMKVVQI 519
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 394 bits (1014), Expect = e-110
Identities = 180/474 (37%), Positives = 281/474 (59%), Gaps = 6/474 (1%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVELRSRRPI 64
R+ KI+ST+GP+S S D + +L E G +V R+N SH H++ I IR R+ R +
Sbjct: 3 RKTKIVSTIGPASESVDKLVQLMEAGMNVARLNFSHGDHEEHGRRIANIREAAKRTGRTV 62
Query: 65 GILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGSSDRVMLPHPEIFASIKIGDRL 124
IL+D +GP+ R N ++L EG + + LG+ +++ + +P + + +G ++
Sbjct: 63 AILLDTKGPEIRTHNMENGAIELKEGSKLVISMSEVLGTPEKISVTYPSLIDDVSVGAKI 122
Query: 125 LIDDGRVKLCVQE--KGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDLHAA 182
L+DDG + L V K G I V+ G + ++KG++ P + +T+KDR D+
Sbjct: 123 LLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGVKVNLPGITEKDRADILFG 182
Query: 183 LQTCEVDWVALSFIQSADDLLEIRKII---SQNKIGLMSKIEKPRAIEYASEIIQLSDAV 239
++ +D++A SF++ A D+LEIR+++ I +++KIE + EI++ +D +
Sbjct: 183 IR-QGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAADGL 241
Query: 240 MVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVAT 299
MVARGDLGVE+ E +P IQK LI+ + LGKPV+ ATQML+SM +P PTRAE SDVA
Sbjct: 242 MVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVAN 301
Query: 300 AVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIEPNETGADVI 359
A+F+ DA+MLS ETA+G YPV+AV+TM +A E+ ++ S R E T D I
Sbjct: 302 AIFDGTDAVMLSGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTKESQTTITDAI 361
Query: 360 SSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCV 419
+ A L ++AI T SG T A+ RPK IIA++ +RRLALVWG++
Sbjct: 362 GQSVAHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLALVWGVYTK 421
Query: 420 VTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYIG 473
+ +D+M++ A V G K GD ++I+AG+P+G GSTN++++ I
Sbjct: 422 EAPHVNTTDEMLDVAVDAAVRSGLVKHGDLVVITAGVPVGETGSTNLMKVHVIS 475
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, structural
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 369 bits (948), Expect = e-103
Identities = 141/477 (29%), Positives = 250/477 (52%), Gaps = 7/477 (1%)
Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIR-AVELRSR 61
R +I+ T+GP+ ++ D + ++ + G +V R+N SH H+ ++ I+ A++ R
Sbjct: 34 TAHRTRIVCTMGPACWNVDTLVKMIDAGMNVCRLNFSHGDHETHARTVQNIQEAMKQRPE 93
Query: 62 RPIGILIDLQGPKFRVGKFANSK-VDLTEGQIFTLD-NKDSLGSSDRVMLPHPEIFASIK 119
+ IL+D +GP+ R G + K + L +G + + + +G + + + S+K
Sbjct: 94 ARLAILLDTKGPEIRTGFLKDHKPITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVK 153
Query: 120 IGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDREDL 179
G+ +LI DG + + V E G ++ + +I +RK ++ P+ + + +KD+ D+
Sbjct: 154 PGNTILIADGSLSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDI 213
Query: 180 HAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQLSD 237
+++A SF+QSADD+ IR ++ I ++ KIE + EI+ +D
Sbjct: 214 LNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEAD 273
Query: 238 AVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297
+M+ARGDLG+E+ E + QK +I +GKPV+ ATQMLESM+ +P PTRAE +DV
Sbjct: 274 GIMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADV 333
Query: 298 ATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSW--LEMRSLRRIEPNETG 355
A AV + D +MLS ETA+G +PV V TM+ + AE + L + P +
Sbjct: 334 ANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPIST 393
Query: 356 ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWG 415
+ ++ AA + AE + + I T +G T A+ RP I+ALS T + L ++ G
Sbjct: 394 QEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRG 453
Query: 416 IHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNMLRIAYI 472
+ + +D ++ A + E+ G+ I+ G+ GS+N+L++ +
Sbjct: 454 VTTMQVPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLLKVLTV 510
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A*
3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A*
1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A*
Length = 550
Score = 357 bits (916), Expect = 4e-99
Identities = 170/490 (34%), Positives = 262/490 (53%), Gaps = 24/490 (4%)
Query: 5 RRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAVE------L 58
R II T+GP+S S + + + + G +V R+N SH +H+ E IK +R
Sbjct: 62 RNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDP 121
Query: 59 RSRRPIGILIDLQGPKFRVGKFANS---KVDLTEGQIFTLDNKDSL---GSSDRVMLPHP 112
RP+ + +D +GP+ R G S +V+L +G + ++ + + L +
Sbjct: 122 ILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYK 181
Query: 113 EIFASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISIADRKGISFPDTFLTTQALT 172
I +++G ++ +DDG + L V++KG F+ +V G S+ +KG++ P + A++
Sbjct: 182 NICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVS 241
Query: 173 QKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYAS 230
+KD +DL ++ D V SFI+ A D+ E+RK++ + I ++SKIE +
Sbjct: 242 EKDIQDLKFGVEQDV-DMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFD 300
Query: 231 EIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPT 290
EI++ SD +MVARGDLG+E+ E + QK +I + GKPV+ ATQMLESM+ P PT
Sbjct: 301 EILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPT 360
Query: 291 RAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRRIE 350
RAE SDVA AV + AD IMLS ETA G YP++AVR L+A AE L++ R
Sbjct: 361 RAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRL 420
Query: 351 PNETG--ADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTAR 408
T + + A + + AI T SG + + AR RP+ IIA++ QTAR
Sbjct: 421 APITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTAR 480
Query: 409 RLALVWGIHCVVTED------ASDSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPG 462
+ L GI V+ +D A D D VN A + +GF K GD +I+ G G+ G
Sbjct: 481 QAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGS-G 539
Query: 463 STNMLRIAYI 472
TN +R+ +
Sbjct: 540 FTNTMRVVPV 549
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A
{Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1
c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 352 bits (903), Expect = 1e-97
Identities = 152/486 (31%), Positives = 243/486 (50%), Gaps = 18/486 (3%)
Query: 3 NLRRIKIISTLGPSSFSEDVINRLHEEGTDVFRINMSHTSHDKMCELIKKIRAV-ELRSR 61
+LRR II T+GP + + + + L + G ++ R+N SH S++ +I R EL
Sbjct: 17 DLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPG 76
Query: 62 RPIGILIDLQGPKFRVGKFAN-SKVDLTEGQIFTLDNKDSLGSSD---RVMLPHPEIFAS 117
RP+ I +D +GP+ R G N + D + + + + I
Sbjct: 77 RPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKV 136
Query: 118 IKIGDRLLIDDGRVKLCVQEK-GIGFIKCKVIAGISIADRKGISFPDTFLTTQALTQKDR 176
I G + +DDG + V E +K K + I KG++ P T + AL++KD+
Sbjct: 137 ISAGRIIYVDDGVLSFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDK 196
Query: 177 EDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--KIGLMSKIEKPRAIEYASEIIQ 234
EDL ++ V SFI++A+D+L IR+++ + + ++ KIE + + EI++
Sbjct: 197 EDLRFGVKNGV-HMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILK 255
Query: 235 LSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEV 294
++D VMVARGDLG+E+ + +QKKLI + GKPV+ ATQMLESM +P PTRAEV
Sbjct: 256 VTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEV 315
Query: 295 SDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVASSAERDSSWLEMRSLRR--IEPN 352
SDV A+ + AD +MLS ETA G+YP++AV TM+ A AE+ ++L R
Sbjct: 316 SDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKP 375
Query: 353 ETGADVISSAARQIAETLRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLAL 412
+ + ++++A + AI + SG T ++ RP II ++ + AR L
Sbjct: 376 TSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHL 435
Query: 413 VWGIHCVVTEDAS------DSDDMVNRACRIVVEQGFGKPGDRIIISAGLPLGTPGSTNM 466
G+ V E D + +N E G K GD + G G G +N
Sbjct: 436 YRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGA-GHSNT 494
Query: 467 LRIAYI 472
L+++ +
Sbjct: 495 LQVSTV 500
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 54.2 bits (130), Expect = 7e-08
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 213 KIGLMSKIEKPRAIEYASEIIQLS--DAVMVARGDLGVEMALELIPG------IQKKLIR 264
I ++ +IE + ++ I D + V DL + + +
Sbjct: 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFN 204
Query: 265 IARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETAS 316
A GKP I + R + AT V +D + + T
Sbjct: 205 RASAHGKPSGI-------LAPVEADARRYLEWGATFVAVGSDLGVFRSATQK 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.9 bits (119), Expect = 1e-06
Identities = 68/427 (15%), Positives = 115/427 (26%), Gaps = 183/427 (42%)
Query: 57 ELRS----RRP-IGILIDLQGPKFRVGKFANSKVDLTEGQIFT--------LDNKDSLGS 103
ELR +G LI + L ++FT L+N +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 104 SD-----RVMLPHPEIFASIKIGDRLLIDDGRVKLC---------------VQE--KGI- 140
D + P LI G ++L ++ KG
Sbjct: 228 KDYLLSIPISCP--------------LI--GVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 141 ----GFIKCKVIAGISIAD---------RKGIS------------FPDTFLT-------- 167
G + I+ D RK I+ +P+T L
Sbjct: 272 GHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 168 -------TQALTQKD--REDLHAALQTC-----EVDWVALSFIQSADDLLEIRKIIS--- 210
+ L+ + +E + + V +S + A +L ++S
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPP 383
Query: 211 QNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLG 270
Q+ GL + K +A S + Q +R IP ++KL
Sbjct: 384 QSLYGLNLTLRKAKA---PSGLDQ-------SR-----------IPFSERKL-------- 414
Query: 271 KPVVIATQMLESMVTSPF--PTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMS 328
+ + L V SPF SD+ + + + +A+ PV
Sbjct: 415 ---KFSNRFLP--VASPFHSHLLVPASDLINKDLVKNN-VSFNAK--DIQIPVYDTFD-- 464
Query: 329 LVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAE-------TLRLSA--IFCYT 379
D +R L + I T + A I +
Sbjct: 465 ------GSD-----LRVL--------SGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 380 ASGATGL 386
GA+GL
Sbjct: 506 PGGASGL 512
Score = 44.9 bits (106), Expect = 4e-05
Identities = 61/384 (15%), Positives = 115/384 (29%), Gaps = 141/384 (36%)
Query: 163 DTFLT-----TQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLM 217
+ F T+ D T + V F+ L+E +K+G
Sbjct: 35 EQFNKILPEPTEGFAADDE-------PTTPAELVG-KFLGYVSSLVE------PSKVGQF 80
Query: 218 SKIEKPRAI--EYASEIIQLSDAVMVARGDLGVEMALELIPGIQKKLIRI---ARQLGKP 272
++ E+ + ++ +D +A L + K+LI+ AR
Sbjct: 81 DQV--LNLCLTEFENCYLEGNDIHALAAKLLQEN---DTTLVKTKELIKNYITAR----- 130
Query: 273 VVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPVDAVRTMSLVAS 332
M PF ++ +A+F G+ + +++
Sbjct: 131 ---------IMAKRPFDKKSN-----SALFRAV---------GEGN-----AQLVAIFGG 162
Query: 333 SAERDSSWLEMRSLRRI-EPNETGADVISSAARQIAETLRL--SAIFCYTASGATG---- 385
D + E+R L + D+I +A ++E +R A +T G
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQ----GLNIL 216
Query: 386 --LRAARERPKLEIIA---LS-PMI---Q------TARRLALVWGI-------------- 416
L P + + +S P+I Q TA+ + G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATG 272
Query: 417 HC--VVTEDA---SDSDDMVNRACRIVVE----------QGFGK----PGDRII---ISA 454
H +VT A +DS + + R + + + P I+ +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS--ILEDSLEN 330
Query: 455 GLPLGTPGSTNMLRIAYIGADGLS 478
G P + ML I+ L+
Sbjct: 331 N--EGVP--SPMLSIS-----NLT 345
>2ols_A Phosphoenolpyruvate synthase; MCSG, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 2.40A {Neisseria meningitidis MC58}
Length = 794
Score = 31.4 bits (70), Expect = 0.53
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 29/116 (25%)
Query: 190 WVALSFIQSADDLLEIRKIISQN---------KIGLMSKIEKPRAIEYASEIIQLSDAVM 240
+ + F+++ + + K + +N ++ +M E P A + +Q D
Sbjct: 643 EIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMM--CELPSNAVLAEQFLQYFDGFS 700
Query: 241 VARGDL-----GV--------EMALELIPGIQKKLIRI----ARQLGKPVVIATQM 279
+ D+ G+ E E P + K ++ + R+ K V I Q
Sbjct: 701 IGSNDMTQLTLGLDRDSGLVSESFDERNPAV-KVMLHLAISACRKQNKYVGICGQG 755
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 30.0 bits (66), Expect = 1.3
Identities = 7/130 (5%), Positives = 32/130 (24%), Gaps = 4/130 (3%)
Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS----LRRIEPNETGADVISSAARQIAET 369
G+Y + + + + W+ + + ++ +D+ A+ +
Sbjct: 6 KGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIAD 65
Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429
+ AT ++ + + + +
Sbjct: 66 AGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQY 125
Query: 430 MVNRACRIVV 439
+ + ++
Sbjct: 126 VQSGDYHNIL 135
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.9 bits (67), Expect = 1.4
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 33/80 (41%)
Query: 380 ASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC--------VVTEDASDSDDMV 431
+ RA R P L I+ + C + E S D+V
Sbjct: 3 TRESIDKRAGRRGPNLNIV-----------------LTCPECKVYPPKIVERFS-EGDVV 44
Query: 432 NRACRIVVEQGFGKPGDRII 451
C +V+ D+++
Sbjct: 45 CALCGLVLS-------DKLV 57
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
structure, metal binding protein; HET: ATP; 1.60A
{Azotobacter vinelandii}
Length = 276
Score = 29.6 bits (66), Expect = 1.6
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 10/133 (7%)
Query: 355 GADVISSAARQIAETLRLSAIFCYTASGAT-------GLRAARERPKLEIIALSPMIQTA 407
GAD I ++ + L + T +G GL L +A S Q
Sbjct: 54 GADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113
Query: 408 RRLALVWGIHCVVTEDASDSDDMVNRAC---RIVVEQGFGKPGDRIIISAGLPLGTPGST 464
LA + V + D + R VV F + +P +
Sbjct: 114 HILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTG 173
Query: 465 NMLRIAYIGADGL 477
L GA GL
Sbjct: 174 AFLLADAFGAAGL 186
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
metal binding protein; HET: ATP; 1.60A {Azotobacter
vinelandii}
Length = 270
Score = 29.2 bits (65), Expect = 2.1
Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 11/134 (8%)
Query: 355 GADVISSAARQIAETLRLSAIFCYTASGATG---LRAARE----RPKLEIIALSPMIQTA 407
G + +I + + T +G A L + S Q A
Sbjct: 52 GRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNA 111
Query: 408 RRLALVWGIHCVVTEDASDSDDMVN--RACRIVVEQGFGKPGDRIIISAG--LPLGTPGS 463
L + H + + + VV G + +A +P +
Sbjct: 112 AMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDA 171
Query: 464 TNMLRIAYIGADGL 477
L G +
Sbjct: 172 GCFLLAEQFGCKQM 185
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 29.0 bits (64), Expect = 2.3
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 156 RKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQN--- 212
R GI++P+ + + + + + + + ++L IR+ + +
Sbjct: 694 RLGITYPEIYNMQVRAIIEAAIAVSEEGSSVIP-EIMVPLVGKKEELSLIREEVVKTAEA 752
Query: 213 -----------KIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246
+G M IE PRA A I Q +D DL
Sbjct: 753 VITKSGKRVHYTVGTM--IEVPRAAVTADSIAQKADFFSFGTNDL 795
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycosidase, hydrolase, membrane, palmitate;
HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
Length = 642
Score = 28.7 bits (63), Expect = 2.9
Identities = 11/78 (14%), Positives = 28/78 (35%)
Query: 198 SADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMALELIPG 257
L ++ K ++++ I S +++ V D + + +
Sbjct: 482 KPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATV 541
Query: 258 IQKKLIRIARQLGKPVVI 275
+ +++ A Q KP V+
Sbjct: 542 FPRAVMKAALQHNKPFVL 559
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 28.4 bits (63), Expect = 3.3
Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 34/169 (20%)
Query: 262 LIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAETASGSYPV 321
I+ G + + ++ ++ V D V AD
Sbjct: 69 AREISENYGVDLELLQRVQRAV---GLA---RVDDPDAVVHMRAD--------------G 108
Query: 322 DAVRTM-SLVASSAERDSSWLEMRSLRRIEPNETGADVISSAARQIAETLRLSAIFCYTA 380
+A V D L +R L AE +R +A+
Sbjct: 109 EAAARAQRFVELGLNPDQVVLVVRVLAE-------------GLSHAAEAMRYTALEAIMR 155
Query: 381 SGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD 429
GAT L A+ L + + + + + H + TE + +
Sbjct: 156 PGATELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGER 204
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 28.4 bits (62), Expect = 3.5
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRSL---RRI-EPNETGADVISSAARQIAET 369
+ G+Y + V T + + W+ R+ RR +E+ A + + A R+
Sbjct: 16 LSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSN 75
Query: 370 LRLSAIFCYTASGATGLRAARERPKLEIIALSPMIQTARRLALVWGIHC 418
LSA T + P ++A S + L G
Sbjct: 76 AGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKGILGFDLSAGAAG 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.4 bits (62), Expect = 3.9
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 151 ISIADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALS------FIQSADDLLE 204
I+ ADR P++ + +K ++L AA + E +W + + Q + +E
Sbjct: 74 IAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 205 IRKIISQNKIGLMSKIEKPRA 225
KI N+I + ++P A
Sbjct: 133 KNKI--NNRIADKAFYQQPDA 151
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing
independent processing; 2.2A {Xenopus laevis} SCOP:
d.294.1.1
Length = 292
Score = 28.3 bits (63), Expect = 4.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 68 IDLQGPKFRVGKFANSKVDLTEGQIFTLDNKDSLGS 103
I LQG V +N D +F +++ L S
Sbjct: 35 ISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKS 70
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 28.1 bits (62), Expect = 4.6
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 20/114 (17%)
Query: 379 TASGATGLRAARE-RPKLEIIALSP---MIQTARRLALVWGIHCV--VTEDASDSDDMVN 432
+G +R K ++++ + + A+R GI V V D +
Sbjct: 84 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143
Query: 433 RACRIVVEQGFG----------KPGDRIIISAGLPLGTPGSTNMLRIAYIGADG 476
I V G K G R+I+ P+ S + D
Sbjct: 144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIV----PINLKLSRRQPAFLFKKKDP 193
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 28.1 bits (62), Expect = 5.0
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 395 LEIIALSPMIQTARRLALVWGIHCVVTEDASDSDD--MVNRACRIVVEQGFGKPGDRIII 452
E I P++ R L+ GI V ++ + D + E+G II
Sbjct: 359 KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL------IIG 412
Query: 453 SAGLPLGTPGSTNMLRIA 470
G+ N+L +A
Sbjct: 413 RNGMTTAGYN--NILTLA 428
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis}
Length = 451
Score = 27.6 bits (61), Expect = 5.6
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 396 EIIALSPMIQTARRLALVWGIHCVVTEDASDSDDMVNRACRIVVEQGFGKPGDRIIISAG 455
+ A I R + + V D+ C G +I+ +
Sbjct: 365 RLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAG-------VIVLSC 417
Query: 456 LPLGTPGSTNMLRIA 470
G N++R
Sbjct: 418 GTYG-----NVVRFL 427
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase;
1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1
d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A
2r82_A 2fm4_A
Length = 873
Score = 27.8 bits (61), Expect = 6.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 187 EVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVARGDL 246
E+ +V ++ A+ + + + Q IG M IE PRA A I + ++ DL
Sbjct: 712 ELKFVKDVVVEVAEQVKKEKGSDMQYHIGTM--IEIPRAALTADAIAEEAEFFSFGTNDL 769
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 27.6 bits (61), Expect = 6.1
Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 197 QSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLS------DAVMVARGDLGVEM 250
+ ++ ++ I + + P ++ A D V + + + +
Sbjct: 294 EIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLL 353
Query: 251 ALELIPGIQKKLIR 264
+L+ Q I+
Sbjct: 354 NNKLLTFGQFSCIK 367
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid
metabolism, structural genomics, NPPSFA; 2.10A {Aquifex
aeolicus VF5}
Length = 309
Score = 27.6 bits (60), Expect = 6.3
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 314 TASGSYPVDAVRTMSLVASSAERDSSWLEMRS---LRRIEPNETGADVISSAARQIAETL 370
+G Y V T + + W+ R+ RRI ET + + AA++
Sbjct: 6 IGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREA 65
Query: 371 RLSA--IFCYTASGATG 385
LS + + T
Sbjct: 66 NLSPEELDLIILATLTP 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.7 bits (60), Expect = 6.6
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 362 AARQIAETLRLSAIFCYTASGATGL--RAARE 391
A +++ +L+L Y A L +A E
Sbjct: 21 ALKKLQASLKL-----YADDSAPALAIKATME 47
>1sx5_A Type II restriction enzyme ecorv; endonuclease, protein-DNA
complex, hydrolase/DNA complex; 1.50A {Escherichia coli}
SCOP: c.52.1.2 PDB: 1stx_A 1eon_A* 1eo3_A* 1eo4_A*
1eoo_A* 1eop_A* 1rve_A 2b0d_A 2b0e_A 1b94_A* 1az3_A
1az0_A* 1b95_A* 1bgb_A* 1bsu_A* 1bua_A* 1rv5_A 1rva_A*
1rvb_A* 1rvc_A* ...
Length = 244
Score = 27.5 bits (61), Expect = 6.6
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKI 220
R DL AL + I +I + S + +S I
Sbjct: 3 RSDLINALYDENQKYDVCGII---SAEGKIYPLGSDTAV--LSTI 42
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 27.4 bits (60), Expect = 6.9
Identities = 36/249 (14%), Positives = 76/249 (30%), Gaps = 20/249 (8%)
Query: 40 HTSHDKMCELIKKIRAVELRSRRPIGILIDLQGPKFRVGKFANSKVDLTEGQIFTLDNKD 99
+ K I + S D + ++N + ++ + K
Sbjct: 378 EVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKV 437
Query: 100 SLGSSDRVMLPHPEI------FASIKIGDRLLIDDGRVKLCVQEKGIGFIKCKVIAGISI 153
+ + H ++ F G + +DG +Q G G + I
Sbjct: 438 NRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSG---LFYLNDELI 494
Query: 154 ADRKGISFPDTFLTTQALTQKDREDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNK 213
D+K +F ++ ++ L+ +V V + + L +
Sbjct: 495 IDQKHNQERGSFCFGAGTKERTKK---LTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQ 551
Query: 214 IGLMSKIEKPRAIEYASEIIQLSDAVMVARGDLGVEMA-------LELIPGIQKKLIRIA 266
G++ I+ I A+E+ D ++ G G ++L P +L+R
Sbjct: 552 AGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDL-PKRTNELVRAV 610
Query: 267 RQLGKPVVI 275
+ VI
Sbjct: 611 LKANPNTVI 619
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA ATG; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 27.3 bits (60), Expect = 7.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 421 TEDASDSDDMVNRACRIVVEQGFG 444
+ + S+ D + + A R V E
Sbjct: 495 SGEGSEDDPLYDEAVRFVTESRRA 518
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 1.60A {Pseudomonas syringae PV}
Length = 233
Score = 27.2 bits (59), Expect = 8.9
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 232 IIQLSDAVMVARGDLGVEMALELIPGIQKKLIRIARQLGKPVVIATQM 279
++ + G L V+ +++ IQK L++ AR V+ +
Sbjct: 27 VVDMQKVFCEPTGALYVKSTADIVQPIQK-LLQAARAAQVMVIYLRHI 73
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA
binding, high salt, solution structure, DNA binding
protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP:
a.49.1.1
Length = 91
Score = 27.1 bits (60), Expect = 9.2
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 362 AARQIAETLRLSAIFCYTASGATGL---RAARERPKLEI 397
A R + +LRL+A+ + R A L++
Sbjct: 45 ALRILNHSLRLAAMTAHGKGERVNEDYLRQAFRELDLDV 83
>3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural
genomics, seattle structural genomics center for
infectious disease; HET: PLP; 1.90A {Giardia lamblia
atcc 50803}
Length = 448
Score = 27.1 bits (59), Expect = 9.6
Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 18 FSEDVINRLHEEGTDVF------RINMSHTSHDKMCELIKKIRAV 56
+ + ++ L E+ ++ R++M + + + I
Sbjct: 397 LTPEHVDYLKEK-WSIYLVKAGGRMSMCGLTESNCDYVAEAIHDA 440
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.135 0.378
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,990,091
Number of extensions: 189198
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 57
Length of query: 480
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 384
Effective length of database: 3,365,806
Effective search space: 1292469504
Effective search space used: 1292469504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)