Query gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 100 out of 102
Neff 5.4
Searched_HMMs 33803
Date Wed Jun 1 12:57:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780443.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ahn_A Thaumatin-like protein 60.4 12 0.00036 17.8 4.2 54 23-77 1-54 (222)
2 >1jb0_F Photosystem 1 reaction 30.3 16 0.00048 17.0 0.6 31 2-32 1-35 (79)
3 >1z3q_A Thaumatin-like protein 21.6 55 0.0016 13.9 9.2 95 23-134 1-100 (200)
4 >2vhk_A Thaumatin-I; kinetics 17.8 66 0.002 13.4 11.7 102 23-135 1-106 (206)
5 >1tzs_X 23-MER peptide from PE 15.0 48 0.0014 14.3 0.4 21 4-24 3-23 (26)
6 >1aun_A PR-5D; antifungal prot 14.7 79 0.0023 13.0 8.9 97 23-135 2-103 (208)
7 >2wsc_F Photosystem I reaction 13.6 38 0.0011 14.8 -0.4 20 13-32 67-89 (151)
8 >1pjv_A Cobatoxin 1, COTX1, GT 11.1 63 0.0019 13.6 0.1 12 105-116 9-20 (32)
9 >2vec_A YHAK, pirin-like prote 10.5 1.1E+02 0.0032 12.2 4.9 53 54-109 27-88 (96)
10 >2jen_A Xyloglucanase, endo-be 8.2 47 0.0014 14.3 -1.5 19 117-135 199-217 (261)
No 1
>>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium} (A:)
Probab=60.40 E-value=12 Score=17.78 Aligned_cols=54 Identities=4% Similarity=-0.024 Sum_probs=37.9
Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEE
Q ss_conf 7229831899848999999748885787546885788703740567667479999
Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLY 77 (141)
Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g~l~~r~yY~y 77 (141)
|-|+|-|+-++.||.+|.-.. .......|=|.++||+-..+-....++..+--+
T Consensus 1 at~ti~N~C~~tVWp~~~~~~-g~~~~~~~gf~L~pg~s~~~~~p~~wsgriw~R 54 (222)
T 2ahn_A 1 ATISFKNNCPYMVWPGTLTSD-QKPQLSTTGFELASQASFQLDTPVPWNGRFWAR 54 (222)
T ss_dssp CEEEEEECSSSCBEEEEEEGG-GCCCCSCSBCCBCTTCEEEEECCSSEEEEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCC-CCCCCCCCCEEECCCCEEEEECCCCCCCCEEEE
T ss_conf 959999799997203767789-977668987772799628886799863126621
No 2
>>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:1-79)
Probab=30.29 E-value=16 Score=17.01 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH-CCCCCC---CCEEEECCCC
Q ss_conf 578999999999974-368354---7229831899
Q gi|254780443|r 2 LRSFLICFCFGAMIF-CSNVSF---AGFRVCNGTK 32 (141)
Q Consensus 2 l~~~l~~~~~~~~~~-~~~~A~---A~~~vCN~T~ 32 (141)
||+|++.++..++.+ .+.+|. |+|+-|.+..
T Consensus 1 Mrrl~aliL~~~l~~~~~p~A~Ad~agLtpC~es~ 35 (79)
T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASADVAGLVPCKDSP 35 (79)
T ss_dssp -----------------------CGGGCEEGGGCH
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCH
T ss_conf 92799999999999838963012440785074599
No 3
>>1z3q_A Thaumatin-like protein; beta sandwich, antifungal protein; 1.70A {Musa acuminata} (A:)
Probab=21.60 E-value=55 Score=13.93 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCC-CCCCCEEEEEEEECCCCCCCCCCE-EEEECCCCE
Q ss_conf 722983189984899999974888578754688578870374056-766747999999538871205750-136507532
Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG-ALHSRYYYLYAEGVSHSEHWAGNV-QMCVGQDEF 100 (141)
Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g-~l~~r~yY~yAe~~~~~~~w~G~~-~~Cv~~~~F 100 (141)
|-|+|-|+-++.||.+|. +. |-+.++||+-.++... ..++..+.-+-- -..+|+- .-|...+-
T Consensus 1 at~ti~N~C~~tVWp~~~---~~------~G~~L~~g~s~~~~~~~~~w~griw~Rtg-----C~~~~~g~~~C~tGdc- 65 (200)
T 1z3q_A 1 ATFEIVNRCSYTVWAAAV---PG------GGRQLNQGQSWTINVNAGTTGGRIWGRTG-----CSFDGSGRGRCQTGDC- 65 (200)
T ss_dssp CEEEEEECSSSCEEEEEE---TT------EEEEECTTCEEEEECCTTCCSEEEEEEEE-----EEECTTSBEEEEESCC-
T ss_pred CEEEEEECCCCCEECCCC---CC------CCCCCCCCCCEEEECCCCCCCCCEECCCC-----CCCCCCCCCEEECCCC-
T ss_conf 969999599997015524---88------98115999836986899864540524588-----7768998630412566-
Q ss_pred EEECCCCHHHCCCCCCCCEEEEE---CCCCEEEEEEE
Q ss_conf 55253101227840028288760---79751789970
Q gi|254780443|r 101 NIVDIKNCYTRGYLRVGFTEYDT---GQHENWTVQLT 134 (141)
Q Consensus 101 ~i~g~~dC~~RG~~~~~F~evDt---g~~~~wTv~Lt 134 (141)
.|..+|...|--.+-..|+.. ++++.|-|.|-
T Consensus 66 --gg~~~C~~~g~ppaTlaEftl~~~~~~d~YdvSlV 100 (200)
T 1z3q_A 66 --GGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLV 100 (200)
T ss_dssp --TTBSSCSSCCCSSCCEEEEEEEETTTEEEEEEECT
T ss_pred --CCEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEE
T ss_conf --86024478999986304788537888662466413
No 4
>>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* 2pe7_A* 1thv_A* ... (A:)
Probab=17.79 E-value=66 Score=13.43 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=64.1
Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECC-CCCCCCEEEEEEEECCCCCCCCCCE-EEEECCCCE
Q ss_conf 72298318998489999997488857875468857887037405-6766747999999538871205750-136507532
Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVK-GALHSRYYYLYAEGVSHSEHWAGNV-QMCVGQDEF 100 (141)
Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~-g~l~~r~yY~yAe~~~~~~~w~G~~-~~Cv~~~~F 100 (141)
|-|+|-|+-++.||.+|.- + .+-...|=+.++||+-..+.. ...++..+- |+. +-..+++- ..|..-+-
T Consensus 1 at~ti~N~C~~tVWp~~~~--~-~~~~~~gG~~L~~g~s~~~~~p~~~w~GriW--~RT---gC~~~~~g~~~C~TGdC- 71 (206)
T 2vhk_A 1 ATFEIVNRCSYTVWAAASK--G-DAALDAGGRQLNSGESWTINVEPGTNGGKIW--ART---DCYFDDSGSGICKTGDC- 71 (206)
T ss_dssp CEEEEEECSSSCEEEEEEC--S-SSEEEEEEEEECTTCEEEEECCTTCCSEEEE--EEB---SCEECTTSBEECSBSCC-
T ss_pred CCEEEECCCCEEEEEECCC--C-CHHHCCCCEECCCCCCCEEEEEECCCCCCEE--CCC---CCCCCCCCCCEEECCCC-
T ss_conf 9078841443257753146--7-4200577515578999768986568875251--134---65545777635503665-
Q ss_pred EEECCCCHHHCCCCCCCCEEEEE--CCCCEEEEEEEC
Q ss_conf 55253101227840028288760--797517899707
Q gi|254780443|r 101 NIVDIKNCYTRGYLRVGFTEYDT--GQHENWTVQLTE 135 (141)
Q Consensus 101 ~i~g~~dC~~RG~~~~~F~evDt--g~~~~wTv~Lt~ 135 (141)
.|.-+|..-|-..+-..|+-. ++++.|-|.|-+
T Consensus 72 --gg~l~C~~~g~pP~TlAEftl~~~~~d~YdvSlVd 106 (206)
T 2vhk_A 72 --GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIK 106 (206)
T ss_dssp --TTBSSCSSCCCSSCCEEEEEEEETTEEEEEEECTT
T ss_pred --CCCCEECCCCCCCHHHHHHHHCCCCCCEEEEEECC
T ss_conf --56410046997961155544137888705533003
No 5
>>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} (X:)
Probab=14.99 E-value=48 Score=14.26 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 899999999997436835472
Q gi|254780443|r 4 SFLICFCFGAMIFCSNVSFAG 24 (141)
Q Consensus 4 ~~l~~~~~~~~~~~~~~A~A~ 24 (141)
-+|...+.++++++..||-|-
T Consensus 3 yllptaaagllllaaqpamam 23 (26)
T 1tzs_X 3 YLLPTAAAGLLLLAAQPAMAM 23 (26)
T ss_pred CCCHHHHHHHHHHHCCHHHHH
T ss_conf 213007878899945837764
No 6
>>1aun_A PR-5D; antifungal protein, pathogenesis-related protein, osmotin, thaumatin-like protein; 1.80A {Nicotiana tabacum} (A:)
Probab=14.74 E-value=79 Score=12.97 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCC-CCCCCEEEEEEEECCCCCCCCCCE-EEEECCCCE
Q ss_conf 722983189984899999974888578754688578870374056-766747999999538871205750-136507532
Q gi|254780443|r 23 AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG-ALHSRYYYLYAEGVSHSEHWAGNV-QMCVGQDEF 100 (141)
Q Consensus 23 A~~~vCN~T~~~v~vAigy~~~~~~W~seGWw~i~pg~C~~vl~g-~l~~r~yY~yAe~~~~~~~w~G~~-~~Cv~~~~F 100 (141)
+-|+|-|+-++.||.+|.- . .++ +.++||+-..+... ..++..+--+-- =..+|.- .-|..-+
T Consensus 2 ~t~ti~N~C~~tVWp~~~~-~-~gg------~~L~~G~s~~~~~p~~~wsgriW~Rtg-----C~~~~~g~~~C~TGd-- 66 (208)
T 1aun_A 2 GVFEVHNNCPYTVWAAATP-V-GGG------RRLERGQSWWFWAPPGTKMARIWGRTN-----CNFDGAGRGWCQTGD-- 66 (208)
T ss_dssp CEEEEEECSSSCEEEEEET-T-TEE------EEECTTCEEEEECCTTCCSEEEEEEEE-----EEECTTSBEEEEESC--
T ss_pred CEEEEEECCCCCCCCCCCC-C-CCC------CCCCCCCCEEEECCCCCCCCCEEECCC-----CCCCCCCCCCCCCCC--
T ss_conf 7799996999980233357-8-987------524899715897799875441550378-----777899864301367--
Q ss_pred EEECCCCHHHCCCCCCCCEEEEEC---CCCEEEEEEEC
Q ss_conf 552531012278400282887607---97517899707
Q gi|254780443|r 101 NIVDIKNCYTRGYLRVGFTEYDTG---QHENWTVQLTE 135 (141)
Q Consensus 101 ~i~g~~dC~~RG~~~~~F~evDtg---~~~~wTv~Lt~ 135 (141)
-.|..+|...|-..+-..|+..+ +++.|-|.|-|
T Consensus 67 -Cgg~~~C~~~g~pPaTLaEftl~~~~~~d~YdVSlVd 103 (208)
T 1aun_A 67 -CGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVID 103 (208)
T ss_dssp -CTTBSSCSSCCCSSCCEEEEEEEEGGGEEEEEEECTT
T ss_pred -CCCEEECCCCCCCCCCEEEEEECCCCCCCEEECCCCC
T ss_conf -6886746898888744057885367876515121015
No 7
>>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F* 2o01_F* (F:1-151)
Probab=13.62 E-value=38 Score=14.85 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=11.0
Q ss_pred HHHHCCCCCCCC---EEEECCCC
Q ss_conf 997436835472---29831899
Q gi|254780443|r 13 AMIFCSNVSFAG---FRVCNGTK 32 (141)
Q Consensus 13 ~~~~~~~~A~A~---~~vCN~T~ 32 (141)
.+.+.|.+|.|| |+-|.+..
T Consensus 67 ~~~~aP~~a~AdvagLtPCseS~ 89 (151)
T 2wsc_F 67 SWSVAPDAAMADIAGLTPCKESK 89 (151)
T ss_dssp -----------CCSSCCCSSSCH
T ss_pred HHCCCCCCHHHHHCCCCCCCCCH
T ss_conf 52048860233202885075699
No 8
>>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} (A:)
Probab=11.12 E-value=63 Score=13.55 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=9.1
Q ss_pred CCCHHHCCCCCC
Q ss_conf 310122784002
Q gi|254780443|r 105 IKNCYTRGYLRV 116 (141)
Q Consensus 105 ~~dC~~RG~~~~ 116 (141)
+.||..|||+..
T Consensus 9 dkdckrrgyrsg 20 (32)
T 1pjv_A 9 DKDCKRRGYRSG 20 (32)
T ss_dssp HHHHHTTTSSEE
T ss_pred CCHHHHCCCCCC
T ss_conf 506666175456
No 9
>>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} (A:161-256)
Probab=10.53 E-value=1.1e+02 Score=12.20 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=35.1
Q ss_pred EEECCCCEEEECCCCCCCCEEEEEEEECC---------CCCCCCCCEEEEECCCCEEEECCCCHH
Q ss_conf 88578870374056766747999999538---------871205750136507532552531012
Q gi|254780443|r 54 WQIPGNTCETVVKGALHSRYYYLYAEGVS---------HSEHWAGNVQMCVGQDEFNIVDIKNCY 109 (141)
Q Consensus 54 w~i~pg~C~~vl~g~l~~r~yY~yAe~~~---------~~~~w~G~~~~Cv~~~~F~i~g~~dC~ 109 (141)
.++++|+-.+ -++..|+.|+|...-. +...-.||..+...++.++|...+|..
T Consensus 27 ~~l~~g~~~~---~~~~~r~~yl~vi~G~v~v~~~~~~~~~L~~gD~~~i~~~~~l~i~a~~~a~ 88 (96)
T 2vec_A 27 IVLDKGESAN---FQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLR 88 (96)
T ss_dssp EEECTTCEEE---EECSSSEEEEEEEESCEEEEETTEEEEEECTTCEEEEESCSEEEEEESSSEE
T ss_pred EEECCCCEEE---EEECCCCEEEEEEEEEEEECCCCCCCEEECCCCEEEECCCCEEEEEECCCCE
T ss_conf 9988998699---9835882899999989997343567606516753897489769999489979
No 10
>>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A (A:)
Probab=8.18 E-value=47 Score=14.29 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=12.0
Q ss_pred CCEEEEECCCCEEEEEEEC
Q ss_conf 8288760797517899707
Q gi|254780443|r 117 GFTEYDTGQHENWTVQLTE 135 (141)
Q Consensus 117 ~F~evDtg~~~~wTv~Lt~ 135 (141)
-|.=|.+....+.|+++.+
T Consensus 199 qy~~vr~~~~~sgtidv~~ 217 (261)
T 2jen_A 199 VFSFIRTANTQSANLNIRD 217 (261)
T ss_dssp EEEEEESSCCSEEEEEHHH
T ss_pred EEEEEECCCCCEEEEEHHH
T ss_conf 9999968998517888999
Done!