RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>gnl|CDD|148096 pfam06282, DUF1036, Protein of unknown function (DUF1036).  This
           family consists of several hypothetical bacterial
           proteins of unknown function.
          Length = 115

 Score =  150 bits (382), Expect = 9e-38
 Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 23  AGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVS 82
           AG RVCN T+N++GVA+GY     GW +EGWW I    CET+++G L SRYYYLYAE   
Sbjct: 4   AGLRVCNDTQNVVGVAIGYKD-GEGWTSEGWWTIDPGKCETLIEGPLKSRYYYLYAEDAD 62

Query: 83  HSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLRVGFTEYDTGQHENWTVQLTE 135
               W G++Q CV +DEF IV +++C  RGY R GF E DTG+ ++WTVQLTE
Sbjct: 63  GGGRWGGDIQFCVREDEFTIVGVEDCLARGYDRAGFFEVDTGEQKSWTVQLTE 115


>gnl|CDD|180453 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 521

 Score = 34.8 bits (81), Expect = 0.008
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 36  GVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHS 71
           G  VG   V+G W+ +G+W  P  T ET+  G LH+
Sbjct: 364 GGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHT 399


>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
          Length = 496

 Score = 27.5 bits (61), Expect = 1.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 20  VSFAGFRVCNGTKNLIGVA-VGYPAVKGGWMTEGWWQIPGNTCETVVKGALHS 71
           V F  + + +  KN + V  VG   ++G  + + +W  P  T ET+  G L +
Sbjct: 323 VLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCT 375


>gnl|CDD|184391 PRK13914, PRK13914, invasion associated secreted endopeptidase;
           Provisional.
          Length = 481

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 74  YYLYAEGVSHSEHWAGNVQMCVGQDEFNIVDIKNCYTRGYLR--VGF 118
           ++ Y  G+SH   + GN QM   QD  N V   N +  G+ +  VGF
Sbjct: 434 FFDYGSGISHVGIYVGNGQMINAQD--NGVKYDNIHGSGWGKYLVGF 478


>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 563

 Score = 26.1 bits (57), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 39  VGYPAVKGGWMTEGWWQIPGNTCETVVKGALHS 71
           +G   VKG  + +G+W  P  T   +  G LH+
Sbjct: 403 IGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHT 435


>gnl|CDD|152538 pfam12103, Lipl32, Surface lipoprotein of Spirochaetales order.
           Lipl32 is an outer membrane surface lipoprotein of
           Leptospira like bacteria.
          Length = 183

 Score = 26.0 bits (57), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 110 TRGYLRVGFTEYDTGQHE 127
            RG  R+ FT Y TG+ +
Sbjct: 148 VRGLYRISFTTYKTGEVK 165


>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein;
           Provisional.
          Length = 441

 Score = 25.5 bits (56), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 1   MLRSFLICFCFGAM 14
           MLRS L+  CFGA+
Sbjct: 242 MLRSLLLQLCFGAI 255


>gnl|CDD|182738 PRK10795, PRK10795, penicillin-binding protein 2; Provisional.
          Length = 634

 Score = 24.7 bits (54), Expect = 7.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 52  GWWQIPG 58
           GWWQ+PG
Sbjct: 357 GWWQLPG 363


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.139    0.478 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,282,680
Number of extensions: 128551
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 13
Length of query: 141
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,179,401
Effective search space: 238225857
Effective search space used: 238225857
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)