RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780443|ref|YP_003064856.1| hypothetical protein
CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>2zz8_A LIPL32 protein; outer-membrane protein, unknown function;
           2.01A {Leptospira interrogans} PDB: 3frl_A* (A:)
          Length = 241

 Score = 29.3 bits (65), Expect = 0.23
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 98  DEFNIVDIKNCYTRGYLRVGFTEYDTGQ 125
           D+   +D K    RG  R+ FT Y  G+
Sbjct: 174 DDLKNIDTKKLLVRGLYRISFTTYKPGE 201


>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein
          structure initiative, PSI-II, NYSGXRC, 11193J,
          structural genomics; 2.15A {Archaeoglobus fulgidus dsm
          4304} (A:364-444)
          Length = 81

 Score = 26.7 bits (59), Expect = 1.1
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 38 AVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYY 75
            G   ++G  + +G+W+      E         +++ 
Sbjct: 19 ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 56


>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo
           sapiens} (A:1-128,A:242-262)
          Length = 149

 Score = 25.5 bits (56), Expect = 3.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 37  VAVGYPAVKGGWMTEGWWQIP 57
           + VG P +  G + EG+W+ P
Sbjct: 126 ILVGNPQLSDGLVYEGFWEDP 146


>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
           transmembrane; HET: NAG; 2.40A {Saccharomyces
           cerevisiae} (A:1-214,A:311-483)
          Length = 387

 Score = 24.7 bits (53), Expect = 5.6
 Identities = 12/86 (13%), Positives = 25/86 (29%)

Query: 6   LICFCFGAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVV 65
           LIC   G +    N+ + G +  +             +        G+ +   N     V
Sbjct: 288 LICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSV 347

Query: 66  KGALHSRYYYLYAEGVSHSEHWAGNV 91
             A H   +          + ++ +V
Sbjct: 348 YNASHMVPFDKSLVSRGIVDIYSNDV 373


>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate
          COA ligase; 1.84A {Burkholderia xenovorans} (A:360-434)
          Length = 75

 Score = 24.0 bits (52), Expect = 8.9
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 38 AVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHS 71
           VG   +KG      +W     +  T +   + S
Sbjct: 18 EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRS 51


>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate
           complex, bacterial toxin; HET: GLA GAL NAG; 2.00A
           {Clostridium difficile} (A:44-117)
          Length = 74

 Score = 23.7 bits (51), Expect = 9.2
 Identities = 5/57 (8%), Positives = 12/57 (21%), Gaps = 13/57 (22%)

Query: 45  KGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVSHSEHWAGNVQMCVGQDEFN 101
             G M  G ++ P               + Y        +      ++        +
Sbjct: 18  TDGIMQIGVFKGPDG-------------FEYFAPANTDANNIEGQAIRYQNRFLYLH 61


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.139    0.478 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,184,526
Number of extensions: 50333
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 28
Length of query: 141
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 61
Effective length of database: 2,251,649
Effective search space: 137350589
Effective search space used: 137350589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)