RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780443|ref|YP_003064856.1| hypothetical protein CLIBASIA_01640 [Candidatus Liberibacter asiaticus str. psy62] (141 letters) >d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human echovirus 1 [TaxId: 46633]} Length = 281 Score = 31.3 bits (71), Expect = 0.030 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%) Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN------WTVQLTEPAQDRR 141 I+N R V + EY TG E+ W + AQ RR Sbjct: 63 TIENFLARSAC-VFYLEYKTGTKEDSNSFNNWVITTRRVAQLRR 105 >d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]} Length = 268 Score = 28.6 bits (64), Expect = 0.20 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 104 DIKNCYTRGYLRVGFTEYDTG-QHENWTVQLTEPAQDRR 141 +++ + R L VG TG +W + E Q R Sbjct: 57 SVESFFGRSSL-VGMPLLATGTSITHWRIDFREFVQLRA 94 >d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]} Length = 279 Score = 28.6 bits (64), Expect = 0.20 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 9/46 (19%) Query: 104 DIKNCYTRGYLRVGFTEYDTGQ--------HENWTVQLTEPAQDRR 141 I++ + RG V E D Q W + + Q RR Sbjct: 53 TIESFFARGAC-VAIIEVDNEQPTTRAQKLFAMWRITYKDTVQLRR 97 >d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]} Length = 271 Score = 28.2 bits (63), Expect = 0.30 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%) Query: 104 DIKNCYTRGYLRVGFTEYDTG-----QHENWTVQLTEPAQDRR 141 ++N R V +T Y+ W + + AQ RR Sbjct: 51 TVENFLCRSAC-VFYTTYENHDSDGDNFAYWVINTRQVAQLRR 92 >d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]} Length = 283 Score = 27.9 bits (62), Expect = 0.38 Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 10/47 (21%) Query: 104 DIKNCYTRGYLRVGFTEYDTG---------QHENWTVQLTEPAQDRR 141 I++ R V + W + L E AQ RR Sbjct: 62 SIESFLGRSGC-VHISRIKVDYTDYNGQDINFTKWKITLQEMAQIRR 107 >d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]} Length = 269 Score = 27.9 bits (62), Expect = 0.38 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 8/45 (17%) Query: 104 DIKNCYTRGYLRVGFTEYDTG-------QHENWTVQLTEPAQDRR 141 +++ R + ++ + W + L E AQ RR Sbjct: 52 SLESFLGRSGC-IHESKLEVTLANYNKENFTVWAINLQEMAQIRR 95 >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 Score = 27.4 bits (61), Expect = 0.46 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 6/37 (16%) Query: 99 EFNIVDIKNCYT-RGYLRV-----GFTEYDTGQHENW 129 E I I Y G L V GF DTG H++ Sbjct: 195 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSL 231 >d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]} Length = 285 Score = 27.1 bits (60), Expect = 0.64 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 7/44 (15%) Query: 104 DIKNCYTRGYLRVGFTEYDTGQHEN------WTVQLTEPAQDRR 141 +++ R + + D + N W + L E AQ RR Sbjct: 66 SVESFLGRSGC-IHESVLDIVDNYNDQSFTKWNINLQEMAQIRR 108 >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Score = 24.9 bits (53), Expect = 3.2 Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 36 GVAVGYPAVKGGWMTEGWWQIPGNTCETVVKG 67 G A+G +KG W+T G++ T + Sbjct: 373 GKALGEVQLKGPWITGGYYGNEEATRSALTPD 404 >d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]} Length = 273 Score = 24.0 bits (52), Expect = 4.9 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 13/50 (26%) Query: 104 DIKNCYTRGYLRVGFTEYDTGQHE------------NWTVQLTEPAQDRR 141 D++ R V TE +W + L+ Q R+ Sbjct: 50 DVECFLGRAAC-VHVTEIQNKDATGIDNHREAKLFNDWKINLSSLVQLRK 98 >d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 Score = 24.0 bits (51), Expect = 5.1 Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 12 GAMIFCSNVSFAGFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETV 64 G ++F + + F K + Y A+ GG TEG+ G E Sbjct: 142 GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWY 194 >d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]} Length = 106 Score = 23.4 bits (50), Expect = 8.6 Identities = 7/22 (31%), Positives = 9/22 (40%) Query: 103 VDIKNCYTRGYLRVGFTEYDTG 124 +D Y G LR+ TE Sbjct: 5 IDANVNYQIGALRIQATENPQS 26 >d1f1sa4 b.30.5.2 (A:620-911) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} Length = 292 Score = 23.4 bits (50), Expect = 8.7 Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 1/73 (1%) Query: 24 GFRVCNGTKNLIGVAVGYPAVKGGWMTEGWWQIPGNTCETVVKGALHSRYYYLYAEGVSH 83 G+ +G + + W T +++ G T + + + +++ Sbjct: 47 GWYTGDGMFYIYNSDQSH-YSNHFWPTVNPYKMAGTTEKDAKREDTTKEFMSKHSKDAKE 105 Query: 84 SEHWAGNVQMCVG 96 VG Sbjct: 106 KTGQVTGTSDFVG 118 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.139 0.478 Gapped Lambda K H 0.267 0.0637 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 579,466 Number of extensions: 25050 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 31 Length of query: 141 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 64 Effective length of database: 1,350,386 Effective search space: 86424704 Effective search space used: 86424704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 48 (22.5 bits)