HHsearch alignment for GI: 254780444 and conserved domain: COG2390
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].
Probab=93.64 E-value=0.17 Score=29.78 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC-CCCC----CCCC---CCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 755899999999999964999889999828998798899751-5788----7557---7989999987321875210000
Q gi|254780444|r 3 SFSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF-GIEG----RNRW---PSTESIFKILAATNETICQLLD 74 (223)
Q Consensus 3 ~~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~-~~~g----~~r~---p~~~~l~kia~~~~v~~~~l~~ 74 (223)
T Consensus 8 ~~~~~~l~~~~A~lYY~~gltQ~eIA~~LgiSR~~v~rlL~~Ar~~GiV~I~i~~~~~~~~~Le~~L~~~fgL~~a~VVp 87 (321)
T COG2390 8 LMEEERLLARAAWLYYVEGLTQSEIAERLGISRATVSRLLAKAREEGIVKISINSPVEGCLELEQQLKERFGLKEAIVVP 87 (321)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 12689999999999984688799999883988999999999999879389996798765399999999965997699974