HHsearch alignment for GI: 254780444 and conserved domain: COG3423
>COG3423 Nlp Predicted transcriptional regulator [Transcription].
Probab=96.06 E-value=0.015 Score=36.53 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999996499988999982899879889975157887557798999998732187521000
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~ 73 (223)
T Consensus 12 dI~A~Lkk~G~Sl~~LS~~agls~~tL~n~L~------rp~pkgEri--IA~algv~P~eIW 65 (82)
T COG3423 12 DIIAALKKKGTSLAALSREAGLSSSTLANALD------RPWPKGERI--IADALGVPPEEIW 65 (82)
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC------CCCCHHHHH--HHHHHCCCHHHHC
T ss_conf 99999998564299999880878789999874------788718899--9999589888818