HHsearch alignment for GI: 254780444 and conserved domain: COG5499
>COG5499 Predicted transcription regulator containing HTH domain [Transcription].
Probab=93.27 E-value=0.21 Score=29.10 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999996499988999982899879889975157887557798999998732187521000
Q gi|254780444|r 10 WEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL 73 (223)
Q Consensus 10 ~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~ 73 (223)
T Consensus 62 ve~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~----~-rraLTle~ikkL~q~~gIpa~~lI 119 (120)
T COG5499 62 VEVIRTLMDQYGLTLADLANEIG-SKSRVSNILS----G-RRALTLEHIKKLHQRFGIPADVLI 119 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHH----H-HHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 89999999993871888899867-6188999973----2-067669999999998695888753