HHsearch alignment for GI: 254780444 and conserved domain: PHA01976
>PHA01976 helix-turn-helix protein.
Probab=99.16 E-value=9.4e-11 Score=89.71 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999964999889999828998798899751578875577989999987321875210000111
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPF 77 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~ 77 (223)
T Consensus 3 F~~RL~~lR~~~g~sQ~eLA~~lGVs~~~is~wE~g~~~-----P~~d~L~~la~~~~VS~D~LlGr~~ 66 (67)
T PHA01976 3 FAIQLIKARNARAWSAPELSRRAGVRHSLIYDFEADKRL-----PNLKTLLRLADALGVTLDWLCGRCG 66 (67)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 899999999986999999999949989999999878989-----9989999999997978999926789