HHsearch alignment for GI: 254780444 and conserved domain: PRK12423

>PRK12423 LexA repressor; Provisional.
Probab=99.91  E-value=2.5e-22  Score=164.71  Aligned_cols=187  Identities=18%  Similarity=0.163  Sum_probs=129.2

Q ss_pred             CCCCC--HHHHHHHHHHHHHHCCCCHH--HHHHHHCCC-HHHHHHHHH-CCCCCCC-CCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             97755--89999999999996499988--999982899-879889975-1578875-57798999998732187521000
Q gi|254780444|r    1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKR-FGIEGRN-RWPSTESIFKILAATNETICQLL   73 (223)
Q Consensus         1 ~~~~~--~~~i~~~i~~l~~~~gls~~--~lA~~~Gv~-~~ti~~~~~-~~~~g~~-r~p~~~~l~kia~~~~v~~~~l~   73 (223)
T Consensus         1 M~~LT~kQ~~iL~fI~~~~~~~G~~Pt~rEI~~~~g~~S~~~v~~hl~~L~~kG~i~r~~~~~R~i~l-----------~   69 (202)
T PRK12423          1 MDTLTPKRAAILAFIRERIAQAGQPPSLAEIAQAFGFASRSVARKHVQALAEAGLIEVVPNQARGIRL-----------P   69 (202)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEEE-----------C
T ss_conf             95208999999999999999629898899999982999867899999999988799706999537993-----------6


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCC
Q ss_conf             011112444544221220243101134522211125444640356437211354542003685599996283324-2148
Q gi|254780444|r   74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYR  152 (223)
Q Consensus        74 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~-P~i~  152 (223)
T Consensus        70 ------~~~~~~~~~~iPv~G~IaAG~Pi~a~------~~~~~~~~~~~~~~-------~~~~~f~LrV~GdSMi~~gI~  130 (202)
T PRK12423         70 ------GGAGRPELLELPVLGRVAAGAPIGAD------LGIHRQLWLDRSLF-------SRTPDYLLQVQGDSMIDDGIL  130 (202)
T ss_pred             ------CCCCCCCCCCCCEEEEECCCCCCCHH------HCCCCEEECCHHHC-------CCCCCEEEEECCCCCCCCCCC
T ss_conf             ------87787654105568887379970321------15565072798991-------889868999888865448968


Q ss_pred             CCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHH-HEEEEEEEE
Q ss_conf             7868999368974058889999717968999999977987999968589887585478-659997799
Q gi|254780444|r  153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL  219 (223)
Q Consensus       153 ~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~-~i~iigrVv  219 (223)
T Consensus       131 dGD~viV~~~~~~~~GdIVvA~i-dgE~TlKr~~~~-~~~i~L~p~N~~~~pI~~~~~~~~~I~G~vv  196 (202)
T PRK12423        131 DGDLVGVHRSPEARDGQIVVARL-DGEVTIKRLERG-ADRIRLLPRNPAYAPIVVAADQDFAIEGVFC  196 (202)
T ss_pred             CCCEEEEECCCCCCCCCEEEEEE-CCEEEEEEEEEE-CCEEEEECCCCCCCCEEECCCCCEEEEEEEE
T ss_conf             99999996368789996999998-992899999998-9999998789999987827999089999999