HHsearch alignment for GI: 254780444 and conserved domain: PRK12423
>PRK12423 LexA repressor; Provisional.
Probab=99.91 E-value=2.5e-22 Score=164.71 Aligned_cols=187 Identities=18% Similarity=0.163 Sum_probs=129.2
Q ss_pred CCCCC--HHHHHHHHHHHHHHCCCCHH--HHHHHHCCC-HHHHHHHHH-CCCCCCC-CCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 97755--89999999999996499988--999982899-879889975-1578875-57798999998732187521000
Q gi|254780444|r 1 MTSFS--HKKIWEAIDRMAERHNLTPS--GLARKAGLD-PTSFNKSKR-FGIEGRN-RWPSTESIFKILAATNETICQLL 73 (223)
Q Consensus 1 ~~~~~--~~~i~~~i~~l~~~~gls~~--~lA~~~Gv~-~~ti~~~~~-~~~~g~~-r~p~~~~l~kia~~~~v~~~~l~ 73 (223)
T Consensus 1 M~~LT~kQ~~iL~fI~~~~~~~G~~Pt~rEI~~~~g~~S~~~v~~hl~~L~~kG~i~r~~~~~R~i~l-----------~ 69 (202)
T PRK12423 1 MDTLTPKRAAILAFIRERIAQAGQPPSLAEIAQAFGFASRSVARKHVQALAEAGLIEVVPNQARGIRL-----------P 69 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEEE-----------C
T ss_conf 95208999999999999999629898899999982999867899999999988799706999537993-----------6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCC
Q ss_conf 011112444544221220243101134522211125444640356437211354542003685599996283324-2148
Q gi|254780444|r 74 DLPFSDGRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSML-PLYR 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~-P~i~ 152 (223)
T Consensus 70 ------~~~~~~~~~~iPv~G~IaAG~Pi~a~------~~~~~~~~~~~~~~-------~~~~~f~LrV~GdSMi~~gI~ 130 (202)
T PRK12423 70 ------GGAGRPELLELPVLGRVAAGAPIGAD------LGIHRQLWLDRSLF-------SRTPDYLLQVQGDSMIDDGIL 130 (202)
T ss_pred ------CCCCCCCCCCCCEEEEECCCCCCCHH------HCCCCEEECCHHHC-------CCCCCEEEEECCCCCCCCCCC
T ss_conf ------87787654105568887379970321------15565072798991-------889868999888865448968
Q ss_pred CCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHH-HEEEEEEEE
Q ss_conf 7868999368974058889999717968999999977987999968589887585478-659997799
Q gi|254780444|r 153 KGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMS-DIEWIARIL 219 (223)
Q Consensus 153 ~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~-~i~iigrVv 219 (223)
T Consensus 131 dGD~viV~~~~~~~~GdIVvA~i-dgE~TlKr~~~~-~~~i~L~p~N~~~~pI~~~~~~~~~I~G~vv 196 (202)
T PRK12423 131 DGDLVGVHRSPEARDGQIVVARL-DGEVTIKRLERG-ADRIRLLPRNPAYAPIVVAADQDFAIEGVFC 196 (202)
T ss_pred CCCEEEEECCCCCCCCCEEEEEE-CCEEEEEEEEEE-CCEEEEECCCCCCCCEEECCCCCEEEEEEEE
T ss_conf 99999996368789996999998-992899999998-9999998789999987827999089999999