HHsearch alignment for GI: 254780444 and conserved domain: TIGR02684
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=97.18 E-value=0.00096 Score=44.30 Aligned_cols=55 Identities=29% Similarity=0.378 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999999996499988999982899879889975157887557798999998732187521
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~ 70 (223)
T Consensus 35 ~~~ALG~iArArGMt--qlA~~tGlsREsLYkALs~~Gn-----P~f~T~lkV~~ALG~~L~ 89 (91)
T TIGR02684 35 IAAALGVIARARGMT--QLAKKTGLSRESLYKALSGGGN-----PTFDTILKVTKALGLKLT 89 (91)
T ss_pred HHHHHHHHHHHCCHH--HHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHCCCEEE
T ss_conf 999988998651657--8999828767887887356889-----566888999984086020