HHsearch alignment for GI: 254780444 and conserved domain: TIGR02754
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease; InterPro: IPR014124 Members of this protein family are predicted proteases that are encoded adjacent to the genes for a nickel-type superoxide dismutase (IPR014123 from INTERPRO). This family of predicted peptidases belong to MEROPS peptidase subfamily S26A (signal peptidase I), which have a Ser/Lys catalytic dyad..
Probab=98.79 E-value=1.7e-08 Score=75.14 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=61.9
Q ss_pred EEECCCCCCCCCCCCCEEEEEC---CCCCCC-CCEEEEEEEC--CCEEEEEEEEECCCEEEEEECCCCC--CCEEEC-HH
Q ss_conf 9962833242148786899936---897405-8889999717--9689999999779879999685898--875854-78
Q gi|254780444|r 140 HKTQDTSMLPLYRKGDILILNS---AIQVNC-GDRLLIKPRT--GDIVAKVLISRRGRSIDLMSLNCCY--PVDTVE-MS 210 (223)
Q Consensus 140 l~V~GDSM~P~i~~Gd~vlVd~---~~~~~~-g~~v~~~~~~--~~~~iKrl~~~~~~~~~l~s~Np~y--~~~~i~-~~ 210 (223)
T Consensus 1 ~kV~G~SM~P~L~~~D~~~V~P~~~~~r~~~~G~v~v~~HP~~p~~~~iKRL~~~~~nG~~~LGDnp~AStDSR~~G~v~ 80 (90)
T TIGR02754 1 LKVTGESMSPTLKPGDRILVRPLLKIARVPPIGEVVVVRHPLKPSLLIIKRLAAVDDNGLFLLGDNPKASTDSRQLGPVP 80 (90)
T ss_pred CEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf 94433215761398886988301102348778808998569899747898613231788388567377876712105888
Q ss_pred HEEEEEEEEE
Q ss_conf 6599977998
Q gi|254780444|r 211 DIEWIARILW 220 (223)
Q Consensus 211 ~i~iigrVvw 220 (223)
T Consensus 81 ~~~L~G~v~~ 90 (90)
T TIGR02754 81 RELLLGKVLA 90 (90)
T ss_pred CHHEEEEEEC
T ss_conf 2025447859