HHsearch alignment for GI: 254780444 and conserved domain: pfam04814
>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=91.65 E-value=0.41 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 9999999999649998899998289987988997515
Q gi|254780444|r 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG 45 (223)
Q Consensus 9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~ 45 (223)
T Consensus 116 v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkG 152 (177)
T pfam04814 116 VAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKG 152 (177)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 9999999998768846678761065599999999668