HHsearch alignment for GI: 254780444 and conserved domain: pfam05225

>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.

Probab=91.79  E-value=0.36  Score=27.66  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=33.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             58999999999999649998899998289987988997515
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFG   45 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~   45 (223)
T Consensus         1 tee~l~~Al~av~~g~-~S~~kAa~~ygIP~sTL~~r~~g~   40 (45)
T pfam05225         1 TEEDLAEALEAVRNGK-MSLRKAARKYGIPRSTLWRRLRGK   40 (45)
T ss_pred             CHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             9789999999999199-679999999789858999997563