HHsearch alignment for GI: 254780444 and conserved domain: smart00530
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=98.63 E-value=7.4e-08 Score=70.94 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r 12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL 72 (223)
Q Consensus 12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l 72 (223)
T Consensus 1 rlr~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~-----p~~~~l~~ia~~l~~~~~~l 56 (56)
T smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRK-----PSLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCCCHHHC
T ss_conf 989999772999999999989599999999979989-----99999999999988889879