HHsearch alignment for GI: 254780444 and conserved domain: smart00530

>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=98.63  E-value=7.4e-08  Score=70.94  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999649998899998289987988997515788755779899999873218752100
Q gi|254780444|r   12 AIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQL   72 (223)
Q Consensus        12 ~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l   72 (223)
T Consensus         1 rlr~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~-----p~~~~l~~ia~~l~~~~~~l   56 (56)
T smart00530        1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRK-----PSLETLKKLAKALGVSLDEL   56 (56)
T ss_pred             CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCCCHHHC
T ss_conf             989999772999999999989599999999979989-----99999999999988889879