HHsearch results for GI: 254780444 and protein with PDBid: 1u78_A
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.30 E-value=0.34 Score=26.40 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 55899999999999964999889999828998798899751
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF 44 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~ 44 (223)
||. +....|..|. +.|+|+.++|+.+|++.+||++|.+.
T Consensus 7 lt~-~~R~~I~~l~-~~G~s~~~IAk~lg~s~stV~r~lk~ 45 (141)
T 1u78_A 7 LSD-TERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCH-HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCH-HHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999-9999999999-97999999999989578999999997