HHsearch results for GI: 254780444 and protein with PDBid: 2fjr_A
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.94 E-value=6.7e-27 Score=192.88 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5589999999999996499-988999982899879889975157887557798999998732187521000011112444
Q gi|254780444|r 4 FSHKKIWEAIDRMAERHNL-TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSDGRT 82 (223)
Q Consensus 4 ~~~~~i~~~i~~l~~~~gl-s~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~~~~~~ 82 (223)
++.+ +.|+||++.+|+ ||++||+++|++++|+++|+++... | .+.+.+++.++++++.||..........
T Consensus 5 ~~~~---e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~-----p-~~~l~~ia~~~gv~~~~l~~~~~~~~~~ 75 (189)
T 2fjr_A 5 WSNV---DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAI-----S-YDFAAHCALETGANLQWLLTGEGEAFVN 75 (189)
T ss_dssp CCHH---HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSC-----C-HHHHHHHHHHHCCCHHHHHHCCSCSCSS
T ss_pred CCHH---HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----C-HHHHHHHHHHHCCCHHHHCCCCCCCCCC
T ss_conf 6889---99999999829987999999979799999999828999-----7-7899999988099834511665455766
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECC
Q ss_conf 54422122024310113452221112544464035643721135454200368559999628332421487868999368
Q gi|254780444|r 83 TEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNSA 162 (223)
Q Consensus 83 ~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~P~i~~Gd~vlVd~~ 162 (223)
.... ...+......+.. |........ ..+..++++.||||+|++.+||+++||++
T Consensus 76 ~~~~-~~~~~~~~~~~~~-----------g~~~~~~~~-------------~~~~~~l~~~g~sm~p~~~~Gd~v~vd~~ 130 (189)
T 2fjr_A 76 NRES-SDAKRIEGFTLSE-----------EILKSDKQL-------------SVDAQFFTKPLTDGMAIRSEGKIYFVDKQ 130 (189)
T ss_dssp TTSS-CSCSEEEEEEEET-----------TEEEEEEEE-------------EBCGGGCSSCCSSEEEEEETTEEEEEETT
T ss_pred CCCC-CCCCCCCEEEECC-----------CCCCCCCCC-------------CCCCCEEEECCCCCCCEECCCCEEEEECC
T ss_conf 5433-1223320587327-----------742017711-------------23431797179877768579949999299
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHHHEEEEEEEEEEEC
Q ss_conf 9740588899997179689999999779879999685898875854786599977998529
Q gi|254780444|r 163 IQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWASQ 223 (223)
Q Consensus 163 ~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~~i~iigrVvw~~~ 223 (223)
.... |++|++..+|+++||||++.+++.+.+.|+|+.| .++.++++|||||||+.+
T Consensus 131 ~~~~--dGiyvi~~~g~~~iKrl~~~p~g~i~~~s~n~~~---~~~~~di~IiGrVv~v~~ 186 (189)
T 2fjr_A 131 ASLS--DGLWLVDIKGAISIRELTKLPGRKLHVAGGKVPF---ECGIDDIKTLGRVVGVYS 186 (189)
T ss_dssp CCSC--SEEEEEEETTEEEEEEEEEETTTEEEEESSSSCE---EEETTSSEEEEEEEEEEE
T ss_pred CCCC--CCEEEEEECCCEEEEEEEECCCCEEEEECCCCCC---CCCCCCEEEEEEEEEEEE
T ss_conf 8444--9889998179288999998589869996899888---998543499999999998