HHsearch results for GI: 254780444 and protein with PDBid: 3bdn_A
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.97 E-value=1.6e-31 Score=222.74 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=145.9
Q ss_pred CCCCCHHH------HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 97755899------999999999964999889999828998798899751578875577989999987321875210000
Q gi|254780444|r 1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD 74 (223)
Q Consensus 1 ~~~~~~~~------i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~ 74 (223)
++++|-++ +.+.++++|+++||||++||+++|++++||++|++|.. .|+.+.|.++|++++++++||..
T Consensus 4 ~~~~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~-----~~~~~~l~~ia~~l~v~~~~l~~ 78 (236)
T 3bdn_A 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGIN-----ALNAYNAALLAKILKVSVEEFSP 78 (236)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTS-----CCCHHHHHHTTTTTTSCGGGTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----HHHHHHHHHHHHHCEEEEEHHCC
T ss_conf 8989999999999999999999998399999999997979999988872852-----46799999752202785121103
Q ss_pred CCCCCCCCC---------CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 111124445---------44221220243101134522211125444640356437211354542003685599996283
Q gi|254780444|r 75 LPFSDGRTT---------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT 145 (223)
Q Consensus 75 ~~~~~~~~~---------~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GD 145 (223)
......... .......++....+++...... +.................+.++++++|.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gd 148 (236)
T 3bdn_A 79 SIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPEL----------RTFTKGDAERWVSTTKKASDSAFWLEVEGN 148 (236)
T ss_dssp HHHHHHHHHHHHHHCCCCSSCSCCCCCCCSSCCCCTTTTC----------CCCSSCCCCCCCCCSCCCSSSCEEEECCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC----------CCCCCCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf 2232322222212235543332112431353157752245----------553234321344202479877399999622
Q ss_pred CC------CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHHHEEEEEEEE
Q ss_conf 32------421487868999368974058889999717968999999977987999968589887585478659997799
Q gi|254780444|r 146 SM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL 219 (223)
Q Consensus 146 SM------~P~i~~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~~i~iigrVv 219 (223)
|| +|.|++||+++||+..+..+|++||++..+++++|||+++. ++.+.|+|+||+||++.+. ++++||||||
T Consensus 149 sM~~~~~~ep~i~~Gd~v~vd~~~~~~~~~~v~v~~~~~~~~iKrl~~~-~~~~~L~s~N~~y~~~~~~-~~~~IiG~Vv 226 (236)
T 3bdn_A 149 SMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRG-SGQVFLQPLNPQYPMIPCN-ESCSVVGKVI 226 (236)
T ss_dssp SSCCCSSCSSCCCSSCEEEECCSSCCCTTSEEEEESTTTCCCCEEEECC-SSSCEEECSSTTSCCBC---CCCEEEEEEE
T ss_pred CCCCCCCCCCEEECCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEE-CCEEEEEECCCCCCCEECC-CCCEEEEEEE
T ss_conf 0577778898886880687614543213878999986999999999997-9989999899998978659-9969999999
Q ss_pred E
Q ss_conf 8
Q gi|254780444|r 220 W 220 (223)
Q Consensus 220 w 220 (223)
+
T Consensus 227 ~ 227 (236)
T 3bdn_A 227 A 227 (236)
T ss_dssp E
T ss_pred E
T ss_conf 8