HHsearch results for GI: 254780444 and protein with PDBid: 3bdn_A

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.97  E-value=1.6e-31  Score=222.74  Aligned_cols=203  Identities=12%  Similarity=0.086  Sum_probs=145.9

Q ss_pred             CCCCCHHH------HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             97755899------999999999964999889999828998798899751578875577989999987321875210000
Q gi|254780444|r    1 MTSFSHKK------IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLD   74 (223)
Q Consensus         1 ~~~~~~~~------i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~   74 (223)
                      ++++|-++      +.+.++++|+++||||++||+++|++++||++|++|..     .|+.+.|.++|++++++++||..
T Consensus         4 ~~~~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~-----~~~~~~l~~ia~~l~v~~~~l~~   78 (236)
T 3bdn_A            4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGIN-----ALNAYNAALLAKILKVSVEEFSP   78 (236)
T ss_dssp             SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTS-----CCCHHHHHHTTTTTTSCGGGTCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-----HHHHHHHHHHHHHCEEEEEHHCC
T ss_conf             8989999999999999999999998399999999997979999988872852-----46799999752202785121103


Q ss_pred             CCCCCCCCC---------CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             111124445---------44221220243101134522211125444640356437211354542003685599996283
Q gi|254780444|r   75 LPFSDGRTT---------EKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDT  145 (223)
Q Consensus        75 ~~~~~~~~~---------~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GD  145 (223)
                      .........         .......++....+++......          +.................+.++++++|.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gd  148 (236)
T 3bdn_A           79 SIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPEL----------RTFTKGDAERWVSTTKKASDSAFWLEVEGN  148 (236)
T ss_dssp             HHHHHHHHHHHHHHCCCCSSCSCCCCCCCSSCCCCTTTTC----------CCCSSCCCCCCCCCSCCCSSSCEEEECCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC----------CCCCCCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf             2232322222212235543332112431353157752245----------553234321344202479877399999622


Q ss_pred             CC------CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHHHEEEEEEEE
Q ss_conf             32------421487868999368974058889999717968999999977987999968589887585478659997799
Q gi|254780444|r  146 SM------LPLYRKGDILILNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARIL  219 (223)
Q Consensus       146 SM------~P~i~~Gd~vlVd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~~i~iigrVv  219 (223)
                      ||      +|.|++||+++||+..+..+|++||++..+++++|||+++. ++.+.|+|+||+||++.+. ++++||||||
T Consensus       149 sM~~~~~~ep~i~~Gd~v~vd~~~~~~~~~~v~v~~~~~~~~iKrl~~~-~~~~~L~s~N~~y~~~~~~-~~~~IiG~Vv  226 (236)
T 3bdn_A          149 SMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRG-SGQVFLQPLNPQYPMIPCN-ESCSVVGKVI  226 (236)
T ss_dssp             SSCCCSSCSSCCCSSCEEEECCSSCCCTTSEEEEESTTTCCCCEEEECC-SSSCEEECSSTTSCCBC---CCCEEEEEEE
T ss_pred             CCCCCCCCCCEEECCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEE-CCEEEEEECCCCCCCEECC-CCCEEEEEEE
T ss_conf             0577778898886880687614543213878999986999999999997-9989999899998978659-9969999999


Q ss_pred             E
Q ss_conf             8
Q gi|254780444|r  220 W  220 (223)
Q Consensus       220 w  220 (223)
                      +
T Consensus       227 ~  227 (236)
T 3bdn_A          227 A  227 (236)
T ss_dssp             E
T ss_pred             E
T ss_conf             8