HHsearch results for GI: 254780444 and protein with PDBid: 3k2z_A
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=99.93 E-value=1e-23 Score=172.27 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=131.4
Q ss_pred CC--HHHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55--89999999999996499--988999982899879889975157887557798999998732187521000011112
Q gi|254780444|r 4 FS--HKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79 (223)
Q Consensus 4 ~~--~~~i~~~i~~l~~~~gl--s~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~~~~ 79 (223)
|| +++|+++|..++++.|+ |+.++|+++|+++++...+- +.|.+. |. +....+... .
T Consensus 3 LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L-------------~~Le~k----G~-i~~~~~~~r-~ 63 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL-------------IALEKK----GY-IERKNGKPR-A 63 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH-------------HHHHHT----TS-EECC---TT-C
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH-------------HHHHHC----CC-HHCCCCCCC-C
T ss_conf 8989999999999999984989669999998299964578889-------------999875----83-010542111-0
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCEEE
Q ss_conf 44454422122024310113452221112544464035643721135454200368559999628332421-48786899
Q gi|254780444|r 80 GRTTEKKEKEIPLLYFPPSGSGGFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPL-YRKGDILI 158 (223)
Q Consensus 80 ~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~V~GDSM~P~-i~~Gd~vl 158 (223)
..........+|+.+...+|...... ....+.+.++... +..+.++|+++|+||||.|. |++||+|+
T Consensus 64 ~~~~~~~~~~ipv~g~i~aG~~~~~~------~~~~~~~~~~~~~------~~~~~~~f~l~V~GdSM~~~~i~~gd~vi 131 (196)
T 3k2z_A 64 LRISKSIRNKIPLIGEIRAGEKREAI------EYLEDYIEIPESF------LSSGYDHFLLKVKGESMIEEHICDGDLVL 131 (196)
T ss_dssp CEESSCCTTEEEEEEEEEECGGGCEE------EEEEEEEECCGGG------SCTTCCEEEEECCSSTTGGGTCCTTCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCEEEECHHH------CCCCCCEEEEEEECCEEEEEECCCCCEEE
T ss_conf 00123444567631300258981354------4555428616143------25777508999938895345427995899
Q ss_pred EECCCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCEEECHHHEEEEEEEEEE
Q ss_conf 936897405888999971796899999997798799996858988758547865999779985
Q gi|254780444|r 159 LNSAIQVNCGDRLLIKPRTGDIVAKVLISRRGRSIDLMSLNCCYPVDTVEMSDIEWIARILWA 221 (223)
Q Consensus 159 Vd~~~~~~~g~~v~~~~~~~~~~iKrl~~~~~~~~~l~s~Np~y~~~~i~~~~i~iigrVvw~ 221 (223)
|+++.++.+|++|++.. +|++++||+.+. ++.+.|.|+||+|+|+.++.++++|+|+||++
T Consensus 132 v~~~~~~~~g~ivv~~~-~~e~t~Kr~~~~-~~~~~L~~~N~~y~~i~~~~~~~~I~G~Vv~v 192 (196)
T 3k2z_A 132 VRRQDWAQNGDIVAAMV-DGEVTLAKFYQR-GDTVELRPANREMSSMFFRAEKVKILGKVVGV 192 (196)
T ss_dssp EEECSCCCTTCEEEEEE-TTEEEEEEEEEE-TTEEEEECSCTTSCCEEEEGGGCEEEEEEEEE
T ss_pred EEECCCCCCCCEEEEEE-CCEEEEEEEEEE-CCEEEEECCCCCCCCEECCCCCEEEEEEEEEE
T ss_conf 97025543697999997-574538899998-99999989999999831488977999999999