HHSEARCH alignment of GI: 254780444 and SCOP domain: d1b0na2

Alignment
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=98.88  E-value=1.7e-09  Score=78.57  Aligned_cols=64  Identities=25%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999996499988999982899879889975157887557798999998732187521000011
Q gi|254780444|r    9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLP   76 (223)
Q Consensus         9 i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~~~~   76 (223)
                      |+++|+++|+++|+||.+||+++|++++++++|++|.    ...|+.+++.++|++++++++++....
T Consensus         2 ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~----~~~ps~~~l~~ia~~l~v~~~~l~~~~   65 (68)
T d1b0na2           2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNL----QTNPSIQFLEKVSAVLDVSVHTLLDEK   65 (68)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC----CSCCCHHHHHHHHHHHTCCHHHHHCCT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCCHHHHHHHHHHHCCCHHHHCCCC
T ss_conf             7999999999829999999989797999999998599----899999999999999898699983998


SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: SinR repressor, DNA-binding domain
species: Bacillus subtilis [TaxId: 1423]