HHSEARCH alignment of GI: 254780444 and SCOP domain: d1e3oc2

Alignment

Probab=90.47  E-value=0.27  Score=25.49  Aligned_cols=55  Identities=9%  Similarity=0.128  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHC------CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             999999999964999889999828------99879889975157887557798999998732187521
Q gi|254780444|r    9 IWEAIDRMAERHNLTPSGLARKAG------LDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC   70 (223)
Q Consensus         9 i~~~i~~l~~~~gls~~~lA~~~G------v~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~   70 (223)
                      .....+..|-..|+||.+.+.++|      .|++||++.++-.       .+..++.|+-.++..|+.
T Consensus        12 Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~-------LS~kn~~kLkP~L~~WL~   72 (75)
T d1e3oc2          12 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN-------LSFKNMSKLKPLLEKWLN   72 (75)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC-------SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH
T ss_conf             9999998788436558999999998717502588999999724-------579889988999999987

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Oct-1
species: Human (Homo sapiens) [TaxId: 9606]