HHSEARCH alignment of GI: 254780444 and SCOP domain: d1ic8a2

Alignment

Probab=95.10  E-value=0.026  Score=32.05  Aligned_cols=42  Identities=12%  Similarity=0.284  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf             899999999999964999889999828998798899751578
Q gi|254780444|r    6 HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIE   47 (223)
Q Consensus         6 ~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~   47 (223)
                      ...|.+-|+..+.+++++|++.|+.+|+|++.||+|-+++.+
T Consensus        26 ~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~   67 (94)
T d1ic8a2          26 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTP   67 (94)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             999999999999986885999999980159999999827998

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Human (Homo sapiens) [TaxId: 9606]