HHSEARCH alignment of GI: 254780444 and SCOP domain: d1j5ya1

Alignment
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.81  E-value=0.027  Score=31.92  Aligned_cols=41  Identities=7%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf             977558999999999999649-99889999828998798899
Q gi|254780444|r    1 MTSFSHKKIWEAIDRMAERHN-LTPSGLARKAGLDPTSFNKS   41 (223)
Q Consensus         1 ~~~~~~~~i~~~i~~l~~~~g-ls~~~lA~~~Gv~~~ti~~~   41 (223)
                      |+++..++...-|+.|.+..+ +|..+||+.+|||..||.+.
T Consensus         1 M~~~k~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rd   42 (65)
T d1j5ya1           1 MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQD   42 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             960099999999999998599785999999979899999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]