HHSEARCH alignment of GI: 254780444 and SCOP domain: d1nera_

Alignment

Probab=94.74  E-value=0.02  Score=32.75  Aligned_cols=53  Identities=25%  Similarity=0.397  Sum_probs=40.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999996499988999982899879889975157887557798999998732187521000
Q gi|254780444|r   13 IDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLL   73 (223)
Q Consensus        13 i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~~~~g~~r~p~~~~l~kia~~~~v~~~~l~   73 (223)
                      |.+.++++|+|-++|++..|++++|+.+...      ..+|+.|.+  ||+++|+.+..+-
T Consensus        14 I~AaL~krG~sLa~lsr~~gls~stl~naL~------rp~pKgEri--IA~aLg~~P~eIW   66 (74)
T d1nera_          14 VIAGLKKRKLSLSALSRQFGYAPTTLANALE------RHWPKGEQI--IANALETKPEVIW   66 (74)
T ss_dssp             HHHHHTTSSCCHHHHHHHHSCCHHHHHHTTT------SSCHHHHHH--HHHHTTSCHHHHS
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC------CCCHHHHHH--HHHHHCCCHHHHC
T ss_conf             9999999688799999990998789999983------778589999--9999785988959

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: Ner
species: Bacteriophage mu [TaxId: 10677]