HHSEARCH alignment of GI: 254780444 and SCOP domain: d1t33a1

Alignment

Probab=90.13  E-value=0.4  Score=24.38  Aligned_cols=38  Identities=16%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499--98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL--TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl--s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |+++|.++--.|..+.|+  |-.++|+.+|++.+++.++.
T Consensus        13 tr~~Il~aa~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F   52 (88)
T d1t33a1          13 AKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYF   52 (88)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCC
T ss_conf             9999999999999875401679999988399844310019

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Putative transcriptional repressor YbiH
species: Salmonella typhimurium [TaxId: 90371]