HHSEARCH alignment of GI: 254780444 and SCOP domain: d1vz0a1

Alignment

Probab=93.24  E-value=0.11  Score=28.11  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             55899999999999964999889999828998798899751
Q gi|254780444|r    4 FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRF   44 (223)
Q Consensus         4 ~~~~~i~~~i~~l~~~~gls~~~lA~~~Gv~~~ti~~~~~~   44 (223)
                      |+--+-..++++|+ +.|+|+.++|+++|.|+++|++.-+-
T Consensus         3 L~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrL   42 (93)
T d1vz0a1           3 LSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRL   42 (93)
T ss_dssp             CCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             98999999999999-84999999999985146999999989

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]