HHSEARCH alignment of GI: 254780444 and SCOP domain: d1zk8a1

Alignment

Probab=93.46  E-value=0.063  Score=29.60  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             75589999999999996499---98899998289987988997
Q gi|254780444|r    3 SFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         3 ~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      -+|+++|.++--++..+.|+   |-.++|+++|++++++.++.
T Consensus         2 g~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF   44 (72)
T d1zk8a1           2 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV   44 (72)
T ss_dssp             CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             7239999999999999869775669999999597999998988

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Transcriptional regulator BC5000
species: Bacillus cereus [TaxId: 1396]