HHSEARCH alignment of GI: 254780444 and SCOP domain: d2fbqa1

Alignment

Probab=92.52  E-value=0.1  Score=28.25  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
Q ss_conf             558999999999999649---998899998289987988997
Q gi|254780444|r    4 FSHKKIWEAIDRMAERHN---LTPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         4 ~~~~~i~~~i~~l~~~~g---ls~~~lA~~~Gv~~~ti~~~~   42 (223)
                      -|+++|.++--++..+.|   +|-.++|+++|++..++.++.
T Consensus         4 ~tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F   45 (79)
T d2fbqa1           4 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHF   45 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             899999999999999869350409999999882855787877

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Transcriptional regulator PsrA
species: Pseudomonas aeruginosa [TaxId: 287]