HHSEARCH alignment of GI: 254780444 and SCOP domain: d2hkua1

Alignment

Probab=90.25  E-value=0.53  Score=23.60  Aligned_cols=38  Identities=13%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             CHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHH
Q ss_conf             58999999999999649--998899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHN--LTPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~g--ls~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |+++|.++-.+|..+.|  .|-.++|+++|++.+++.++.
T Consensus         2 tr~~Il~aA~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F   41 (70)
T d2hkua1           2 TRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYY   41 (70)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHCC
T ss_conf             6999999999998761357449999988788853687308

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Putative transcriptional regulator RHA1 ro03468
species: Rhodococcus sp. RHA1 [TaxId: 101510]