HHSEARCH alignment of GI: 254780444 and SCOP domain: d2iu5a1

Alignment
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=91.23  E-value=0.075  Score=29.11  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             775589999999999996499---98899998289987988997
Q gi|254780444|r    2 TSFSHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         2 ~~~~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      +..|.+.|..+..+|..+.|+   |-.++|+++|++++++.++.
T Consensus         4 ~~~t~~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F   47 (71)
T d2iu5a1           4 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF   47 (71)
T ss_dssp             TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf             19999999999999999849640779999987571645897776


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Transcriptional activator DhaS
species: Lactococcus lactis [TaxId: 1358]