HHSEARCH alignment of GI: 254780444 and SCOP domain: d2np5a1

Alignment

Probab=93.08  E-value=0.12  Score=27.73  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHH
Q ss_conf             589999999999996499---98899998289987988997
Q gi|254780444|r    5 SHKKIWEAIDRMAERHNL---TPSGLARKAGLDPTSFNKSK   42 (223)
Q Consensus         5 ~~~~i~~~i~~l~~~~gl---s~~~lA~~~Gv~~~ti~~~~   42 (223)
                      |.|+|.++.-.|..+.|+   |-.++|+++|++++++.++.
T Consensus         2 t~e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F   42 (69)
T d2np5a1           2 SPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHF   42 (69)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             49999999999999849140679999988398887998888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Tetracyclin repressor-like, N-terminal domain
domain: Transcriptional regulator RHA1 ro04179
species: Rhodococcus sp. [TaxId: 1831]