RPSBLAST alignment of GI: 254780444 and protein with PDBid: 3ivp

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Length = 126

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 4  FSHKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILA 63
          +  + +  AI    ++  LT   +     +DP          IE + + PS + ++ +++
Sbjct: 8  YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTN-----IENKGQHPSLQVLYDLVS 62

Query: 64 ATNETICQLLDLPFSDGRTTEKKEKEIPLLYFPPS 98
            N ++ +      S  ++T++++ E  +  F  +
Sbjct: 63 LLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDA 97