RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780444|ref|YP_003064857.1| bacteriophage repressor
protein C1 [Candidatus Liberibacter asiaticus str. psy62]
         (223 letters)



>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
          caldolyticus [TaxId: 1394]}
          Length = 77

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 6  HKKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAAT 65
           +K    + ++  +  ++   LA  AGL  T  ++     +E  +R  S  +I KI AA 
Sbjct: 8  KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISE-----VERGDRNISLINIHKICAAL 62

Query: 66 NETICQLLD 74
          +        
Sbjct: 63 DIPASTFFR 71


>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
          {Bacillus subtilis [TaxId: 1423]}
          Length = 68

 Score = 32.8 bits (75), Expect = 0.023
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 11 EAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIFKILAATNETIC 70
          + I +  +    + S LA KAG+  +  +  +R         PS + + K+ A  + ++ 
Sbjct: 4  QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER----NLQTNPSIQFLEKVSAVLDVSVH 59

Query: 71 QLLD 74
           LLD
Sbjct: 60 TLLD 63


>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 7  KKIWEAIDRMAERHNLTPSGLARKAGLDPTSFNKS----------KRFGIEGRNRWPSTE 56
          KKI EA +  + R  LT S LA   G+   S ++            R   +       TE
Sbjct: 8  KKIKEAAEA-SNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITE 66

Query: 57 SIFKILAATNETICQLLDL 75
              +L      + ++L +
Sbjct: 67 KGLDVLYTEFADLSRILAI 85


>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 55

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 41 SKRFGI--EGRNRWPSTESIFKILAATNETICQLLDLPFSDGRTTEKKEKEI 90
          S++F      R RWP +   +++   ++++  QL  + + DG   E KE +I
Sbjct: 3  SRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELKENDI 54


>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39,
          C-terminal domains {Trichomonas vaginalis [TaxId:
          5722]}
          Length = 192

 Score = 25.3 bits (55), Expect = 4.0
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 38 FNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDL 75
             ++ F    + +  + E I  I+A   E      DL
Sbjct: 40 EKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADL 77


>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
           {Alcaligenes faecalis [TaxId: 511]}
          Length = 679

 Score = 24.7 bits (52), Expect = 6.7
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 14/101 (13%)

Query: 25  SGLARKAGLDPTSFNKSKRFGIEGRNRWPSTESIF----KILAATNETICQLLDLPFSDG 80
           + +A           K++         W + E  F    +                    
Sbjct: 565 ARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGFRRAGQPGAPAIDSQGGSTGHL 624

Query: 81  RTTEKKEKEIPL-LYFP---------PSGSGGFFDSGVFPT 111
            T ++  K     +  P           G+   +  G F T
Sbjct: 625 VTYDRLRKSGNNGVQLPVVSWDESKGLVGTEMLYTEGKFDT 665


>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli
           [TaxId: 562]}
          Length = 138

 Score = 24.1 bits (52), Expect = 8.9
 Identities = 3/28 (10%), Positives = 4/28 (14%)

Query: 166 NCGDRLLIKPRTGDIVAKVLISRRGRSI 193
                       G +         GR  
Sbjct: 85  ELNATHHRPVSEGKVRGVCQPLHLGRQN 112


>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 172

 Score = 24.3 bits (52), Expect = 9.7
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 12 AIDRMAERHNLTPSGLARKAGLDPTS 37
           + R A    L P+ L+  A +   S
Sbjct: 70 TLYRSAPPEGLRPTELSALAAISGPS 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,241
Number of extensions: 38143
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 11
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)