HHsearch alignment for GI: 254780445 and conserved domain: COG0018
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.01 E-value=6.4e-09 Score=79.90 Aligned_cols=194 Identities=21% Similarity=0.328 Sum_probs=115.6
Q ss_pred CCCCCCCCCCHHHHHHHH-HHHHCCCCCEEEEECCC--CCEECCCCCCHHCCCCCCCCHHHHHCCCC-------------
Q ss_conf 002554442111245544-43311784000013037--82621345300001234433366411367-------------
Q gi|254780445|r 589 VYLEGSDQHRGWFQHSLL-ESCATRGSTPFTSLITH--GFSVDENGEKMSKSKGNVVFPEEIISESG------------- 652 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~ll-~~~~~~~~~Pfk~v~~h--G~vld~~G~KMSKS~GNvi~p~~ii~~yG------------- 652 (963)
T Consensus 338 IyV~gadq~-~~~~ql~~~l~~~g~~~~~-~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~ 415 (577)
T COG0018 338 IYVLGADQH-GHFKQLKAVLELLGYGPDK-EVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEK 415 (577)
T ss_pred EEEECCCCH-HHHHHHHHHHHHHCCCCCC-CEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999678624-4999999999984699865-61899977525778776342248865789999999988766676543211
Q ss_pred ---------HHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf ---------57887888717876655443102567776--------40000011000001224444567310--111278
Q gi|254780445|r 653 ---------ADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAHDTGNEPSL--ADMPAL 713 (963)
Q Consensus 653 ---------aD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~~~~~~~~~--~~l~~~ 713 (963)
T Consensus 416 ~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka----~e~~~~~~~~~~~~l~~~ 491 (577)
T COG0018 416 NEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA----GEDELDLSTEADALLTEL 491 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCHHCCCH
T ss_conf 5777777524067899886289999475399997445997215999999999999854----443455332221010682
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHH
Q ss_conf -887543689999998898765401226688998786302400101020122278998---0899999999999999999
Q gi|254780445|r 714 -EQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPS---SLKRLSSIAVIRILCRHLI 789 (963)
Q Consensus 714 -DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~---s~~R~s~~~~L~~il~~l~ 789 (963)
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~-~~--Vl-~~~~~~~~~aRL~L~~a~~~vL~ngL 566 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA-CP--VL-GAENEELRAARLALVKATRQVLKNGL 566 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHH-CC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999984999999998569559999999999-999999850-87--77-89957899999999999999999778
Q ss_pred HHHC
Q ss_conf 9970
Q gi|254780445|r 790 IWIA 793 (963)
Q Consensus 790 ~lLa 793 (963)
T Consensus 567 ~LLG 570 (577)
T COG0018 567 DLLG 570 (577)
T ss_pred HHCC
T ss_conf 7609