HHsearch alignment for GI: 254780445 and conserved domain: COG0018

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.01  E-value=6.4e-09  Score=79.90  Aligned_cols=194  Identities=21%  Similarity=0.328  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCHHHHHHHH-HHHHCCCCCEEEEECCC--CCEECCCCCCHHCCCCCCCCHHHHHCCCC-------------
Q ss_conf             002554442111245544-43311784000013037--82621345300001234433366411367-------------
Q gi|254780445|r  589 VYLEGSDQHRGWFQHSLL-ESCATRGSTPFTSLITH--GFSVDENGEKMSKSKGNVVFPEEIISESG-------------  652 (963)
Q Consensus       589 ~~~eG~Dq~RgWF~s~ll-~~~~~~~~~Pfk~v~~h--G~vld~~G~KMSKS~GNvi~p~~ii~~yG-------------  652 (963)
T Consensus       338 IyV~gadq~-~~~~ql~~~l~~~g~~~~~-~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~  415 (577)
T COG0018         338 IYVLGADQH-GHFKQLKAVLELLGYGPDK-EVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEK  415 (577)
T ss_pred             EEEECCCCH-HHHHHHHHHHHHHCCCCCC-CEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999678624-4999999999984699865-61899977525778776342248865789999999988766676543211


Q ss_pred             ---------HHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf             ---------57887888717876655443102567776--------40000011000001224444567310--111278
Q gi|254780445|r  653 ---------ADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAHDTGNEPSL--ADMPAL  713 (963)
Q Consensus       653 ---------aD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~~~~~~~~~--~~l~~~  713 (963)
T Consensus       416 ~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka----~e~~~~~~~~~~~~l~~~  491 (577)
T COG0018         416 NEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA----GEDELDLSTEADALLTEL  491 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCHHCCCH
T ss_conf             5777777524067899886289999475399997445997215999999999999854----443455332221010682


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHH
Q ss_conf             -887543689999998898765401226688998786302400101020122278998---0899999999999999999
Q gi|254780445|r  714 -EQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPS---SLKRLSSIAVIRILCRHLI  789 (963)
Q Consensus       714 -DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~---s~~R~s~~~~L~~il~~l~  789 (963)
T Consensus       492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~-~~--Vl-~~~~~~~~~aRL~L~~a~~~vL~ngL  566 (577)
T COG0018         492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA-CP--VL-GAENEELRAARLALVKATRQVLKNGL  566 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHH-CC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999984999999998569559999999999-999999850-87--77-89957899999999999999999778


Q ss_pred             HHHC
Q ss_conf             9970
Q gi|254780445|r  790 IWIA  793 (963)
Q Consensus       790 ~lLa  793 (963)
T Consensus       567 ~LLG  570 (577)
T COG0018         567 DLLG  570 (577)
T ss_pred             HHCC
T ss_conf             7609