HHsearch alignment for GI: 254780445 and conserved domain: COG0018
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.85 E-value=7e-08 Score=72.69 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH----------------------------HHHH
Q ss_conf 225588976215778566878998767089826788882444208999----------------------------9999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEW----------------------------KVEN 113 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~----------------------------~vek 113 (963)
T Consensus 125 SaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~ 204 (577)
T COG0018 125 SANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAK 204 (577)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 79999985233235368899999999983997667866785799999999999995541013777720688999999999
Q ss_pred HHHHCCC---C--H-----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHH-HHHHHHHHHHHHHH
Q ss_conf 8765599---8--3-----3489999999999999999999999999706077636981157767-98999999999998
Q gi|254780445|r 114 EYLAKGK---K--K-----DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRE-SEAQIASELLKIAE 182 (963)
Q Consensus 114 ~l~~~~~---~--~-----~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~-y~~~~~~~F~~l~~ 182 (963)
T Consensus 205 ~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~---~~~E~e~~~~~~~~~vv~~L~~ 280 (577)
T COG0018 205 DLEEDPGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDV---YDSEGESFYNGKVEKVVEDLEE 280 (577)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEE---EECCCHHHHCCCHHHHHHHHHH
T ss_conf 997484612678899999886477578-999999999999999999992953001---3234265526649999999986
Q ss_pred CCCEEC--CCCEEEECC
Q ss_conf 796110--343022057
Q gi|254780445|r 183 SDQIYR--GIKPIMWSI 197 (963)
Q Consensus 183 kGliyr--~~~pV~w~p 197 (963)
T Consensus 281 ~~~~~e~~GA~~vdl~~ 297 (577)
T COG0018 281 KGLLYEDDGALVVDLLK 297 (577)
T ss_pred CCCEEEECCEEEEEHHH
T ss_conf 69776009958986432