HHsearch alignment for GI: 254780445 and conserved domain: COG0143
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=502.39 Aligned_cols=484 Identities=25% Similarity=0.387 Sum_probs=361.7
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 88489962822558897621577856687899876708982678888244420899999998765599833489999999
Q gi|254780445|r 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---------g~tP~---- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---------GITPQ---- 70 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC---------CCCHH----
T ss_conf 87389955898899986413678887899999999826975899951478777889999985---------99989----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
T Consensus 71 ---el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g-- 143 (558)
T COG0143 71 ---ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG-- 143 (558)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEEC--
T ss_conf ---9999999999999998098543--001689777999999999999978987314435647354356456210205--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
T Consensus 144 -~c----------------------------------------p---~c------------------------------- 148 (558)
T COG0143 144 -TC----------------------------------------P---KC------------------------------- 148 (558)
T ss_pred -CC----------------------------------------C---CC-------------------------------
T ss_conf -58----------------------------------------9---86-------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
T Consensus 149 -------------g~~--------------------~a~GD~Ce~----------------------------------- 160 (558)
T COG0143 149 -------------GGE--------------------DARGDQCEN----------------------------------- 160 (558)
T ss_pred -------------CCC--------------------CCCCCHHHH-----------------------------------
T ss_conf -------------753--------------------457643432-----------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
T Consensus 161 --------------------------------------------Cg~~~~P~~l--~~p~~~i~g~~p~~r~~~hyFf~L 194 (558)
T COG0143 161 --------------------------------------------CGRTLDPTEL--INPVCVISGATPEVREEEHYFFRL 194 (558)
T ss_pred --------------------------------------------CCCCCCCHHC--CCCEEEEECCCCCCCCCEEEEEEH
T ss_conf --------------------------------------------2675792121--798168647976433540599887
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-C-CCCCCCCCCHHHHHHC-CCCCCCCC-CCCCCCCEEEEECCCCCEEECCCHHHHHHH
Q ss_conf 224554236899998752000-0-0244434320244304-32000011-234567225898258847325211244421
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKI-R-FFPSSGKNRLRSMIEN-RPDWLLSR-QRNWGVPICFFYNEKGEILLDKAINDRIIK 528 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v-~-~~P~~~k~r~~~~i~~-~~DW~ISR-qR~WG~PIPi~~~e~~~~~~~~~~~~~i~~ 528 (963)
T Consensus 195 ~~-------~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~---~p~-------------- 250 (558)
T COG0143 195 SK-------FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG---DPG-------------- 250 (558)
T ss_pred HH-------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC---CCC--------------
T ss_conf 98-------699999999739654588689999999997668664314589887725799---998--------------
Q ss_pred HHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC--CCCCCCCCCCCCC----CCCCCCCC
Q ss_conf 222118874335640111468878875545664210000333545------43--3222223334431----00255444
Q gi|254780445|r 529 TFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTH------TI--LLGKDPKLAWPAD----VYLEGSDQ 596 (963)
Q Consensus 529 ~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~------~~--~~~~~~~~~~PaD----~~~eG~Dq 596 (963)
T Consensus 251 --------------------------------kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDi 298 (558)
T COG0143 251 --------------------------------KVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDI 298 (558)
T ss_pred --------------------------------CEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCC
T ss_conf --------------------------------779996344889999954121058767898637788845999962456
Q ss_pred CCHHHHHHHHHHHHCC--CCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 2111245544433117--84000013037826213453000012344333664113675788788871-78766554431
Q gi|254780445|r 597 HRGWFQHSLLESCATR--GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGK 673 (963)
Q Consensus 597 ~RgWF~s~ll~~~~~~--~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~ 673 (963)
T Consensus 299 i~--FHav~wPamL~~~~~~lP-~~i~ahg~l~~-~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~ 374 (558)
T COG0143 299 IR--FHAVYWPAMLMAAGLPLP-TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSW 374 (558)
T ss_pred CC--CHHHHHHHHHHHCCCCCC-CEEEEEEEEEE-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 74--324578999973899988-77984013997-794124428818717999987482385798887377888888899
Q ss_pred HHHHHHH--HHHHHHCCCCCCCCCCC-CCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0256777--64000001100000122-44445673101--1127888754368999999889876540122668899878
Q gi|254780445|r 674 NIIQTNI--DTYRKLRNTIRWMLGML-AHDTGNEPSLA--DMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748 (963)
Q Consensus 674 ~~l~~~~--~~~~kl~Nt~rf~l~~l-~~~~~~~~~~~--~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~ 748 (963)
T Consensus 375 ~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~ 453 (558)
T COG0143 375 EDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA 453 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999989988788899999999997525996886545553-4569999999999999999998625999999999999
Q ss_pred HHHCCCCHHHCCCHHHCCCCCCC-HHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 63024001010201222789980-8999-99999999999999997000448999999863886
Q gi|254780445|r 749 NAELSSFYFDIRKDSLYCDSPSS-LKRL-SSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 749 ~~dLS~~Yld~~Kdrly~~~~~s-~~R~-s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
T Consensus 454 ~--~~N~Yi~~~~P--W~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 454 S--RANKYIDEQAP--WKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred H--HHHHHHHCCCC--CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 9--99887642898--023204729999999999999999999981586860299999982886