HHsearch alignment for GI: 254780445 and conserved domain: COG0495
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1027.96 Aligned_cols=682 Identities=24% Similarity=0.332 Sum_probs=502.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88996897799999998647614454056888848996282255889762157785668789987670898267888824
Q gi|254780445|r 22 MRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWD 101 (963)
Q Consensus 22 ~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD 101 (963)
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~-~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKP-EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 6523578999999999865971068988877-755998678788887346854121089999999985697214567556
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 44208999999987655998334899999999999999999999999997060776369811577679899999999999
Q gi|254780445|r 102 CHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIA 181 (963)
Q Consensus 102 ~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~ 181 (963)
T Consensus 82 afGlPae~~A~~~----~~-----~P-------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ 145 (814)
T COG0495 82 AFGLPAENAAIKI----GT-----DP-------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY 145 (814)
T ss_pred CCCCHHHHHHHHH----CC-----CH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
T ss_conf 6686399999985----78-----96-------99999999999999998087612355456479647799999999999
Q ss_pred HCCCEECCCCEEEECCCCCCCCCCHHHEEEE-------E-ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHH
Q ss_conf 8796110343022057435736500210132-------1-0577999833037531122001100000057886544532
Q gi|254780445|r 182 ESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD-------V-DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIA 253 (963)
Q Consensus 182 ~kGliyr~~~pV~w~p~~~T~La~~Evey~d-------~-~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~ 253 (963)
T Consensus 146 ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nW 225 (814)
T COG0495 146 EKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNW 225 (814)
T ss_pred HCCCEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 77988852554310777697615412415876557885268666899999134299998666654247956699898727
Q ss_pred CCCCCCEEEEEECCCCC----CCCCCC------CCEEE-EC--CCHHHH------------HHHHCCCCEEEE-----EE
Q ss_conf 27767458998306653----111123------74355-12--111888------------887609851784-----10
Q gi|254780445|r 254 FSSNHQYGLYDVISCSG----QHTFDT------GKKLI-IS--KNLAQS------------IANQTNVKIALV-----CD 303 (963)
Q Consensus 254 v~p~~~Y~~~~~~~~~~----~~~~~~------~~~~i-~a--~~~~~~------------~~~~~~~~~~~~-----~~ 303 (963)
T Consensus 226 Ig~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~ 305 (814)
T COG0495 226 IGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAE 305 (814)
T ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 07888758998517764410024466357311674899970786678987418651669999988617871563045687
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCC
Q ss_conf 01111128575431378665125511443223322445405640578988989987605212210022034302344551
Q gi|254780445|r 304 VKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGF 383 (963)
Q Consensus 304 ~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~ 383 (963)
T Consensus 306 k~gv-~~g~~a~~p~~~e----~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA---------~~y~l~i~~vi~~~~~ 371 (814)
T COG0495 306 KDGV-FLGGYAINPVNGE----KIPVWIANYVLMEYGTGAVMGVPAHDERDLEFA---------TKYKLPIKKVIMPEGT 371 (814)
T ss_pred CCCE-ECCCCCCCCCCCC----CCCEEEECCCCCCCCCCCEECCCCCCCHHHHHH---------HHCCCCEEEEEECCCC
T ss_conf 7631-1365024777788----677899674314555663545888870206899---------8528861799824887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHH
Q ss_conf 02431001786321135544456754523566479821000000122113210132033331023663022455423689
Q gi|254780445|r 384 YTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLR 463 (963)
Q Consensus 384 ~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k 463 (963)
T Consensus 372 --------~~~~~~~~-------~g~linS~~~~gl~~e-~a~----~~~-~~~--l~~~~~~q~~v~Y----------~ 418 (814)
T COG0495 372 --------VGKKVYEG-------EGVLINSGGLDGLDYE-EAK----VKI-RCG--LVKRGLGQWFVNY----------R 418 (814)
T ss_pred --------CCCEEECC-------CCEEECCCCCCCCCCH-HHH----HHH-HHH--HHHHCCCCEEEEC----------C
T ss_conf --------66400114-------7457625433676405-679----999-986--8872378258851----------4
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECC--CHHHHHHHHHHHCCC--CCCC
Q ss_conf 999875200000244434320244304320000112345672258982588473252--112444212221188--7433
Q gi|254780445|r 464 SRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDK--AINDRIIKTFKDQGS--DAWF 539 (963)
Q Consensus 464 ~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~--~~~~~i~~~~~~~g~--d~~~ 539 (963)
T Consensus 419 ---------------------------lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~ 471 (814)
T COG0495 419 ---------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPW 471 (814)
T ss_pred ---------------------------CCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------------------------51577899997089964547423785547367667436641146798899988
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56401114688788755456642100003335454332-------------22223334431002554442111245544
Q gi|254780445|r 540 SEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL-------------GKDPKLAWPADVYLEGSDQHRGWFQHSLL 606 (963)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~-------------~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll 606 (963)
T Consensus 472 ~~~W---~~~s~~~s~~~ret~Tm~~~~~s--swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~e-h----avlHL 541 (814)
T COG0495 472 DEEW---VIESLPDSTAYRETDTMDTFIDS--SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIE-H----AVLHL 541 (814)
T ss_pred CCCE---EEEECCCCCEEEEHHHHHHHCCC--CCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHH-H----HHHHH
T ss_conf 8361---79966998535323246576043--2101866581007543225788742067201226366-7----77889
Q ss_pred HHH-----HCCC------CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCH
Q ss_conf 433-----1178------400001303782621345300001234433366411367578878887-1787665544310
Q gi|254780445|r 607 ESC-----ATRG------STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKN 674 (963)
Q Consensus 607 ~~~-----~~~~------~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~ 674 (963)
T Consensus 542 ly~rF~hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~ 621 (814)
T COG0495 542 LYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSES 621 (814)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHH
T ss_conf 99999998834757787765044441142687427770454457888989999995840989999860877537887745
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf 256777640000011000001224444567310111278887543689999998898765-4012266889987863024
Q gi|254780445|r 675 IIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDA-FNFKEVVRQLTNFSNAELS 753 (963)
Q Consensus 675 ~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~-~~f~~a~~~i~~F~~~dLS 753 (963)
T Consensus 622 gv~g~~rfL~r~~~l~~~~~~~~----~~~~~~~~~-~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l- 691 (814)
T COG0495 622 GVEGARRFLQRVWNLVKEHLEKL----VEELTKEQG-KEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL- 691 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC----CCCCCCHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-
T ss_conf 64899999999999999864023----333553056-8899999999---99999999999889999999999999-99-
Q ss_pred CCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCCH
Q ss_conf 0010102012227899808999999999999999999970004489999998638867734533588998356898
Q gi|254780445|r 754 SFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNA 829 (963)
Q Consensus 754 ~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~d~ 829 (963)
T Consensus 692 ~~~~~~~~~----------~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~-~~~v~~~~wP~~de~~l~~ 752 (814)
T COG0495 692 RKYLRRTEG----------DR----KVLREALETWVRLLAPFAPHIAEELWEELGN-EGFVSNAPWPEPDEEALVE 752 (814)
T ss_pred HHHHHHCCC----------HH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCEEECCCCCCCHHHCCC
T ss_conf 998750232----------07----8999999999999666664779999999669-9816417899877344165