HHsearch alignment for GI: 254780445 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1527.11 Aligned_cols=771 Identities=26% Similarity=0.446 Sum_probs=694.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88899689779999999864761445405688884899628225588976215778566878998767089826788882
Q gi|254780445|r 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGW 100 (963)
Q Consensus 21 p~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~Gw 100 (963)
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~--~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~ 79 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGT 79 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 98778466508998778866985678--8777897279689799888651165453789999999987079733357987
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 44420899999998765599833489999999999999999999999999706077636981157767989999999999
Q gi|254780445|r 101 DCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI 180 (963)
Q Consensus 101 D~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l 180 (963)
T Consensus 80 DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 80 DHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77883089999999987098801058999999999999999899999999847873555311267988999999999999
Q ss_pred HHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 98796110343022057435736500210132105779998330375311220011000000578865445322776745
Q gi|254780445|r 181 AESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQY 260 (963)
Q Consensus 181 ~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y 260 (963)
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~-----~i~VATTRPEtmlgdtAVaVhP~D-- 232 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDG-----YLVVATTRPETLLGDTAVAVHPDD-- 232 (877)
T ss_pred HHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCCC-----EEEEEECCCCCCCCCEEEEECCCC--
T ss_conf 9789465148743478863340204450001100368999975389986-----389981686301026699989987--
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 89983066531111237435512111888887609851784100111112857543137866512551144322332244
Q gi|254780445|r 261 GLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCG 340 (963)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~G 340 (963)
T Consensus 233 -------------------------------------------eRYk~LvGk~v~lPl~~----r~IpIiaD~~VD~eFG 265 (877)
T COG0525 233 -------------------------------------------ERYKHLVGKEVILPLVG----REIPIIADEYVDPEFG 265 (877)
T ss_pred -------------------------------------------HHHHHHCCCEEECCCCC----CEEEEECCCCCCCCCC
T ss_conf -------------------------------------------66686358889646889----7533534733477678
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 5405640578988989987605212210022034302344551024310-017863211355444567545235664798
Q gi|254780445|r 341 TGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP-GFSGARVLDDAGEKGNANEVVIAALINACA 419 (963)
Q Consensus 341 TG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~ 419 (963)
T Consensus 266 TG~VkItpahD~nD~e---------~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~e-------AR~kIv~~L~~~Gl 329 (877)
T COG0525 266 TGAVKITPAHDFNDYE---------VGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFE-------ARKKIVEDLEEQGL 329 (877)
T ss_pred CCEEEECCCCCCCHHH---------HHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHH-------HHHHHHHHHHHCCC
T ss_conf 7418971699940654---------5301798720688899705467764458986999-------99999999996899
Q ss_pred CCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 2100000012211321013203333102366302245542368999987520--00002444343202443043200001
Q gi|254780445|r 420 ILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLLS 497 (963)
Q Consensus 420 l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~--~v~~~P~~~k~r~~~~i~~~~DW~IS 497 (963)
T Consensus 330 Lvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~-------la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcIS 402 (877)
T COG0525 330 LVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLE-------LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCIS 402 (877)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHH-------HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf 67664445417611677960201232421487075-------26999998745984681688998899998638376422
Q ss_pred CCCCCCCCEEEEEC-CCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12345672258982-58847325211244421222118874335640111468878875545664210000333545433
Q gi|254780445|r 498 RQRNWGVPICFFYN-EKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTIL 576 (963)
Q Consensus 498 RqR~WG~PIPi~~~-e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~ 576 (963)
T Consensus 403 RQlwwGh~IPvWy~~~~g~v~v~~~~~~-----------~~~-----~---~~~~~~~~~~qd~DVLDTWFSS~LwPfst 463 (877)
T COG0525 403 RQLWWGHRIPVWYCKECGNVVVAEEEPE-----------DPA-----A---AEKCPKEELEQDEDVLDTWFSSSLWPFST 463 (877)
T ss_pred EEEECCCCCCEEEECCCCCEEECCCCCC-----------CHH-----H---HCCCCHHCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 2113176351599669983896786543-----------535-----4---24682202057852323324115646400
Q ss_pred CCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCC
Q ss_conf 222-----223334431002554442111245544433117840000130378262134530000123443336641136
Q gi|254780445|r 577 LGK-----DPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 (963)
Q Consensus 577 ~~~-----~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~y 651 (963)
T Consensus 464 lgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~y 543 (877)
T COG0525 464 LGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKY 543 (877)
T ss_pred CCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 68987444777358873003553133899999999999865899962789811678688888755578858979999884
Q ss_pred CHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75788788871-78766554431025677764000001100000122444456731011127888754368999999889
Q gi|254780445|r 652 GADVLRYWAVN-SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVRE 730 (963)
Q Consensus 652 GaD~lR~~~~~-~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~ 730 (963)
T Consensus 544 GaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~ 623 (877)
T COG0525 544 GADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTE 623 (877)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 85899999995368886657688998889999999874999998525445765433222354889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 87654012266889987863024001010201222789980899999999999999999997000448999999863886
Q gi|254780445|r 731 AYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 731 ~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
T Consensus 624 ~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 624 ALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
T ss_conf 9986237889999999969989899999821440285---7778999999999999999984887750157899865898
Q ss_pred CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHH--CCCCHHHHE
Q ss_conf 773453358899835689899999999999999999999999973899974440389982968999772--211365511
Q gi|254780445|r 811 AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNI--EGENLAEIC 888 (963)
Q Consensus 811 ~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~~l~~l--~~~~L~~~~ 888 (963)
T Consensus 701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~----~r~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 774 (877)
T COG0525 701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRN----LRAEMNLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLA 774 (877)
T ss_pred -CEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHHC
T ss_conf -837841689863110237799999999999999999----99975999888506999431-767999998899999843
Q ss_pred EECEEEEECC
Q ss_conf 2041699637
Q gi|254780445|r 889 ITSDITIVHS 898 (963)
Q Consensus 889 ivS~v~i~~~ 898 (963)
T Consensus 775 ~~~~i~~~~~ 784 (877)
T COG0525 775 NLEELEILSP 784 (877)
T ss_pred CCCEEEECCC
T ss_conf 7545652156