HHsearch alignment for GI: 254780445 and conserved domain: COG1384

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=98.05  E-value=2.5e-06  Score=61.92  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=63.4

Q ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-------CHHHHHHHHHHHHCCCCHHHC
Q ss_conf             84899628225588976215778566878998767089826788882444-2-------089999999876559983348
Q gi|254780445|r   54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH-G-------LPIEWKVENEYLAKGKKKDDI  125 (963)
Q Consensus        54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h-G-------LPiE~~vek~l~~~~~~~~~~  125 (963)
T Consensus        19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt---~I   94 (521)
T COG1384          19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLT---EI   94 (521)
T ss_pred             CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC---CC
T ss_conf             86898347-689887321428989899999999997488657999814875101279999986899987099643---48


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf             999999999999999999999999970607763
Q gi|254780445|r  126 PVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF  158 (963)
Q Consensus       126 ~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw  158 (963)
T Consensus        95 P-dP~-G~~~Sya~hf~~~f~~~l~~~Gi~~E~  125 (521)
T COG1384          95 P-DPF-GCCDSYAEHFLRPFEEFLDEFGIEVEF  125 (521)
T ss_pred             C-CCC-CCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9-976-653359999999999999864986499