HHsearch alignment for GI: 254780445 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=98.05 E-value=2.5e-06 Score=61.92 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=63.4
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-------CHHHHHHHHHHHHCCCCHHHC
Q ss_conf 84899628225588976215778566878998767089826788882444-2-------089999999876559983348
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH-G-------LPIEWKVENEYLAKGKKKDDI 125 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h-G-------LPiE~~vek~l~~~~~~~~~~ 125 (963)
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt---~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLT---EI 94 (521)
T ss_pred CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC---CC
T ss_conf 86898347-689887321428989899999999997488657999814875101279999986899987099643---48
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 999999999999999999999999970607763
Q gi|254780445|r 126 PVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF 158 (963)
Q Consensus 126 ~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw 158 (963)
T Consensus 95 P-dP~-G~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 95 P-DPF-GCCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred C-CCC-CCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9-976-653359999999999999864986499