HHsearch alignment for GI: 254780445 and conserved domain: PRK00260
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.94 E-value=5.6e-25 Score=191.07 Aligned_cols=139 Identities=28% Similarity=0.451 Sum_probs=104.3
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 31002554442111245---54443311784000013037-826213453000012344333664113675788788871
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
T Consensus 221 ~DIH~GG~DL~---FPHHENEiAQs~a~~~~-~~a~yW~H~g~l~-i~g~KMSKSlgN~iti~dll~~y~~~~lR~~lLs 295 (460)
T PRK00260 221 FDIHGGGSDLI---FPHHENEIAQSEAATGK-PFANYWMHNGFVT-VNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS 295 (460)
T ss_pred CEEEECCCCCC---CCCCCCHHHHHHHHHCC-CCCCEEEEEEEEE-ECCEEEECCCCCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 54762452677---89961099999886489-8652456510576-3671750357870019999987077999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 7876655443102567776400000110000012244445673101112788875436899999988987-654012266
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVV 741 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~ 741 (963)
T Consensus 296 ~hYR~pl~fs~e~L~~a~~~l~rl~~~~~~~----~~~~~~~---------------~~~~~~~~F~~AL~DDLNTP~Al 356 (460)
T PRK00260 296 AHYRSPLNFSEEALEEAKKALERLYNALRNL----EPAVAPA---------------GGEEFEERFIEAMDDDFNTPEAL 356 (460)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCC---------------CHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 4689966779999999999999999999975----5402553---------------22789999999875227869999
Q ss_pred HHHHHHHH
Q ss_conf 88998786
Q gi|254780445|r 742 RQLTNFSN 749 (963)
Q Consensus 742 ~~i~~F~~ 749 (963)
T Consensus 357 a~Lfelvk 364 (460)
T PRK00260 357 AVLFELAK 364 (460)
T ss_pred HHHHHHHH
T ss_conf 99999999