HHsearch alignment for GI: 254780445 and conserved domain: PRK00260

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.94  E-value=5.6e-25  Score=191.07  Aligned_cols=139  Identities=28%  Similarity=0.451  Sum_probs=104.3

Q ss_pred             CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf             31002554442111245---54443311784000013037-826213453000012344333664113675788788871
Q gi|254780445|r  587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN  662 (963)
Q Consensus       587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~  662 (963)
T Consensus       221 ~DIH~GG~DL~---FPHHENEiAQs~a~~~~-~~a~yW~H~g~l~-i~g~KMSKSlgN~iti~dll~~y~~~~lR~~lLs  295 (460)
T PRK00260        221 FDIHGGGSDLI---FPHHENEIAQSEAATGK-PFANYWMHNGFVT-VNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS  295 (460)
T ss_pred             CEEEECCCCCC---CCCCCCHHHHHHHHHCC-CCCCEEEEEEEEE-ECCEEEECCCCCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf             54762452677---89961099999886489-8652456510576-3671750357870019999987077999999985


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             7876655443102567776400000110000012244445673101112788875436899999988987-654012266
Q gi|254780445|r  663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVV  741 (963)
Q Consensus       663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~  741 (963)
T Consensus       296 ~hYR~pl~fs~e~L~~a~~~l~rl~~~~~~~----~~~~~~~---------------~~~~~~~~F~~AL~DDLNTP~Al  356 (460)
T PRK00260        296 AHYRSPLNFSEEALEEAKKALERLYNALRNL----EPAVAPA---------------GGEEFEERFIEAMDDDFNTPEAL  356 (460)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCC---------------CHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             4689966779999999999999999999975----5402553---------------22789999999875227869999


Q ss_pred             HHHHHHHH
Q ss_conf             88998786
Q gi|254780445|r  742 RQLTNFSN  749 (963)
Q Consensus       742 ~~i~~F~~  749 (963)
T Consensus       357 a~Lfelvk  364 (460)
T PRK00260        357 AVLFELAK  364 (460)
T ss_pred             HHHHHHHH
T ss_conf             99999999