HHsearch alignment for GI: 254780445 and conserved domain: PRK11893
>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=647.59 Aligned_cols=461 Identities=24% Similarity=0.386 Sum_probs=364.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 84899628225588976215778566878998767089826788882444208999999987655998334899999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQA 133 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~ 133 (963)
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~----g-----~~p~----- 66 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEA----G-----ISPQ----- 66 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC----C-----CCHH-----
T ss_conf 9789968999889973446358799999999999955997074687177519999999985----9-----9999-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEE
Q ss_conf 99999999999999999706077636981157767989999999999987961103430220574357365002101321
Q gi|254780445|r 134 CRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDV 213 (963)
Q Consensus 134 c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~ 213 (963)
T Consensus 67 --e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~---- 138 (512)
T PRK11893 67 --ELADRNSASFKRLWEALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEAR---- 138 (512)
T ss_pred --HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC----
T ss_conf --9999999999999998099888--78779987999999999999976797743244432268864445777723----
Q ss_pred ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 05779998330375311220011000000578865445322776745899830665311112374355121118888876
Q gi|254780445|r 214 DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQ 293 (963)
Q Consensus 214 ~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~ 293 (963)
T Consensus 139 -------------------------------------------------------------------------------- 138 (512)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (512)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEE
Q ss_conf 09851784100111112857543137866512551144322332244540564057898898998760521221002203
Q gi|254780445|r 294 TNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIK 373 (963)
Q Consensus 294 ~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~ 373 (963)
T Consensus 139 ------------~~------------------------------------------------------------------ 140 (512)
T PRK11893 139 ------------LG------------------------------------------------------------------ 140 (512)
T ss_pred ------------CC------------------------------------------------------------------
T ss_conf ------------66------------------------------------------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 43023445510243100178632113554445675452356647982100000012211321013203333102366302
Q gi|254780445|r 374 VPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMD 453 (963)
Q Consensus 374 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d 453 (963)
T Consensus 141 ------~----------~--------------~-----------------------~~~~~~~g~~~e~~~~~~~flkl~ 167 (512)
T PRK11893 141 ------E----------D--------------G-----------------------CPRCPIHGKPVEWVEEESYFFRLS 167 (512)
T ss_pred ------C----------C--------------C-----------------------CCCCCCCCCCCEEEECCCCEECCH
T ss_conf ------5----------7--------------8-----------------------865555799776872476112050
Q ss_pred CCCCCCHHHHHHHHHHHHCC--CCCCCCCCCCHHHHHHC-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHHHHHHHH
Q ss_conf 24554236899998752000--00244434320244304-3200001123-45672258982588473252112444212
Q gi|254780445|r 454 KKLGDGSTLRSRALSEVEKI--RFFPSSGKNRLRSMIEN-RPDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRIIKT 529 (963)
Q Consensus 454 ~~~~~~~~~k~~~l~~i~~v--~~~P~~~k~r~~~~i~~-~~DW~ISRqR-~WG~PIPi~~~e~~~~~~~~~~~~~i~~~ 529 (963)
T Consensus 168 ~-------~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~----~---------------- 220 (512)
T PRK11893 168 K-------YQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPG----D---------------- 220 (512)
T ss_pred H-------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----C----------------
T ss_conf 5-------467799997249865186999999999985778766152567878998888----8----------------
Q ss_pred HHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 221188743356401114688788755456642100003335454332-------2222333443100255444211124
Q gi|254780445|r 530 FKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL-------GKDPKLAWPADVYLEGSDQHRGWFQ 602 (963)
Q Consensus 530 ~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~-------~~~~~~~~PaD~~~eG~Dq~RgWF~ 602 (963)
T Consensus 221 -----------------------------~~~~~yvWfda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~--fH 269 (512)
T PRK11893 221 -----------------------------PKHVIYVWFDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILR--FH 269 (512)
T ss_pred -----------------------------CCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCC--HH
T ss_conf -----------------------------88620112531355677645887656478984487504323665120--13
Q ss_pred HHHHHHH--HCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHH
Q ss_conf 5544433--11784000013037826213453000012344333664113675788788871-78766554431025677
Q gi|254780445|r 603 HSLLESC--ATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTN 679 (963)
Q Consensus 603 s~ll~~~--~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~ 679 (963)
T Consensus 270 ~~~~~a~l~~~~~~~p-~~~~~hg~l~~-~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~ 347 (512)
T PRK11893 270 AVYWPAFLMAAGLPLP-KRVFAHGFLTN-DGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEAFINR 347 (512)
T ss_pred HHHHHHHHHHCCCCCC-CCCCCCEEEEE-CCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 8889999986699988-63431114887-571501347875899999998595040287763288777878789999989
Q ss_pred HH--HHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 76--40000011000001224-4445673101112788875436899999988987654012266889987863024001
Q gi|254780445|r 680 ID--TYRKLRNTIRWMLGMLA-HDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFY 756 (963)
Q Consensus 680 ~~--~~~kl~Nt~rf~l~~l~-~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Y 756 (963)
T Consensus 348 ~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~~~~--~~N~y 425 (512)
T PRK11893 348 INADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILELAA--EANKY 425 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 7589999999999999999987517878886658876899999999999999999971259999999999999--99999
Q ss_pred HHCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 010201-2227899808999999999999999999970004489999998638867
Q gi|254780445|r 757 FDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEA 811 (963)
Q Consensus 757 ld~~Kd-rly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~ 811 (963)
T Consensus 426 ~~~~~PW~l~k--~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 426 IDEQAPWSLAK--TDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHCCCHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 88478753315--8999999999999999999999985843599999999849998