HHsearch alignment for GI: 254780445 and conserved domain: PRK12418
>PRK12418 cysteinyl-tRNA synthetase; Provisional.
Probab=99.85 E-value=1.2e-19 Score=154.11 Aligned_cols=137 Identities=23% Similarity=0.367 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCCC-CEECCCCCCHHCCCCCCCCHHHHHCC-CCHHHHHHHHH
Q ss_conf 31002554442111245---544433117840000130378-26213453000012344333664113-67578878887
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITHG-FSVDENGEKMSKSKGNVVFPEEIISE-SGADVLRYWAV 661 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~~~ 661 (963)
T Consensus 215 ~DIHgGG~DL~---FPHHENEiAQsea~~g~~~~a~yW~H~g~l~-~~geKMSKSlGN~i~i~dl~~~g~~p~~~R~~lL 290 (384)
T PRK12418 215 FDIQGGGSDLI---FPHHEFSAAHAEAATGERRFARHYVHAGMIG-LDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL 290 (384)
T ss_pred EEEECCCCCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHCEEE-ECCEECCCCCCCEEEHHHHHHCCCCHHHHHHHHH
T ss_conf 67846862565---8883549999998658974878886004266-8886745668871469999863898799999997
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 17876655443102567776400000110000012244445673101112788875436899999988987-65401226
Q gi|254780445|r 662 NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEV 740 (963)
Q Consensus 662 ~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a 740 (963)
T Consensus 291 ~~hYR~~l~fs~~~l~~A~~~l~r~~~a~~----~---~~~--~~--------------~~~~~~~~~~al~DDlNTP~A 347 (384)
T PRK12418 291 AGHYRSDREWTDAVLAEAEARLARWRAATA----L---PAG--PD--------------AADVVARVREYLADDLDTPGA 347 (384)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----C---CCC--CC--------------HHHHHHHHHHHHHHCCCHHHH
T ss_conf 056799768899999999999999999871----6---678--86--------------688999999998742655899
Q ss_pred HHHHHHHHHH
Q ss_conf 6889987863
Q gi|254780445|r 741 VRQLTNFSNA 750 (963)
Q Consensus 741 ~~~i~~F~~~ 750 (963)
T Consensus 348 la~l~~l~~~ 357 (384)
T PRK12418 348 LAAVDGWATD 357 (384)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999