HHsearch alignment for GI: 254780445 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.21 E-value=7e-12 Score=100.39 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCCC-CEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 431002554442111245---544433117840000130378-2621345300001234433366411367578878887
Q gi|254780445|r 586 PADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITHG-FSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV 661 (963)
Q Consensus 586 PaD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~ 661 (963)
T Consensus 128 ~~DIH~GG~DL~---FPHHeNE~AQs~a~~~~-~~a~~W~H~g~l~-~~g~KMSKSlgN~~~i~dll~~~~~~~~R~~ll 202 (213)
T cd00672 128 TFDIHGGGVDLI---FPHHENEIAQSEAAFGK-PFARYWLHTGHLT-IDGEKMSKSLGNFITVRDALKKYDPEVLRLALL 202 (213)
T ss_pred CEEEECCCCCCC---CCCCCCHHHHHHHHHCC-CCCCEEEEHHHHH-HCCCEECCCCCCEEEHHHHHHCCCHHHHHHHHH
T ss_conf 625634763565---89970499998886589-9601000345787-275640345787526999984399999999998
Q ss_pred HCCCCCCCCCC
Q ss_conf 17876655443
Q gi|254780445|r 662 NSDYHDDQRLG 672 (963)
Q Consensus 662 ~~~~~~d~~~~ 672 (963)
T Consensus 203 s~hYR~~l~fs 213 (213)
T cd00672 203 SSHYRSPLDYS 213 (213)
T ss_pred HCCCCCCCCCC
T ss_conf 27378987899