HHsearch alignment for GI: 254780445 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.97 E-value=1.4e-05 Score=56.75 Aligned_cols=120 Identities=17% Similarity=0.286 Sum_probs=77.8
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf 62822558897621577856687899876708982678888244420899999998765599833489999999999999
Q gi|254780445|r 59 HDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSA 138 (963)
Q Consensus 59 ~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a 138 (963)
T Consensus 25 ~CG-PTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~----~-----~~~~-------~ela 87 (213)
T cd00672 25 VCG-PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE----E-----GLSI-------KEVA 87 (213)
T ss_pred ECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH----C-----CCCH-------HHHH
T ss_conf 789-968899876534257689999999996399358999726751899999998----3-----9999-------9999
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEE-EEEECCE
Q ss_conf 999999999999706077636981157767989999999999987961103430220574357365002101-3210577
Q gi|254780445|r 139 SAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEY-HDVDSDS 217 (963)
Q Consensus 139 ~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey-~d~~~~s 217 (963)
T Consensus 88 ~~y~~~f~~d~~~Lni~----~p--~~~Pra-------------------------WHiEC-saM~~~~lg~~~DIH~GG 135 (213)
T cd00672 88 EYYTAEFFEDMKALNVL----PP--DVYPRV-------------------------WHIEC-SAMSMKYLGETFDIHGGG 135 (213)
T ss_pred HHHHHHHHHHHHHHCCC----CC--CCCCCE-------------------------EEEEC-HHHHHHHHCCCEEEECCC
T ss_conf 99999999999982899----99--813545-------------------------20145-999898828962563476
Q ss_pred EEEEEEECCC
Q ss_conf 9998330375
Q gi|254780445|r 218 ILVGFPVKSS 227 (963)
Q Consensus 218 ~~v~F~l~~~ 227 (963)
T Consensus 136 ~DL~FPHHeN 145 (213)
T cd00672 136 VDLIFPHHEN 145 (213)
T ss_pred CCCCCCCCCC
T ss_conf 3565899704