HHsearch alignment for GI: 254780445 and conserved domain: cd00672

>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.97  E-value=1.4e-05  Score=56.75  Aligned_cols=120  Identities=17%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf             62822558897621577856687899876708982678888244420899999998765599833489999999999999
Q gi|254780445|r   59 HDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSA  138 (963)
Q Consensus        59 ~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a  138 (963)
T Consensus        25 ~CG-PTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~----~-----~~~~-------~ela   87 (213)
T cd00672          25 VCG-PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE----E-----GLSI-------KEVA   87 (213)
T ss_pred             ECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH----C-----CCCH-------HHHH
T ss_conf             789-968899876534257689999999996399358999726751899999998----3-----9999-------9999


Q ss_pred             HHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEE-EEEECCE
Q ss_conf             999999999999706077636981157767989999999999987961103430220574357365002101-3210577
Q gi|254780445|r  139 SAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEY-HDVDSDS  217 (963)
Q Consensus       139 ~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey-~d~~~~s  217 (963)
T Consensus        88 ~~y~~~f~~d~~~Lni~----~p--~~~Pra-------------------------WHiEC-saM~~~~lg~~~DIH~GG  135 (213)
T cd00672          88 EYYTAEFFEDMKALNVL----PP--DVYPRV-------------------------WHIEC-SAMSMKYLGETFDIHGGG  135 (213)
T ss_pred             HHHHHHHHHHHHHHCCC----CC--CCCCCE-------------------------EEEEC-HHHHHHHHCCCEEEECCC
T ss_conf             99999999999982899----99--813545-------------------------20145-999898828962563476


Q ss_pred             EEEEEEECCC
Q ss_conf             9998330375
Q gi|254780445|r  218 ILVGFPVKSS  227 (963)
Q Consensus       218 ~~v~F~l~~~  227 (963)
T Consensus       136 ~DL~FPHHeN  145 (213)
T cd00672         136 VDLIFPHHEN  145 (213)
T ss_pred             CCCCCCCCCC
T ss_conf             3565899704