HHsearch alignment for GI: 254780445 and conserved domain: cd00674
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.62 E-value=0.00078 Score=44.66 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCC--HHHHHHHHHHHHCCC-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 4310025544421--112455444331178-4000013037826213453000012344333664113675788788871
Q gi|254780445|r 586 PADVYLEGSDQHR--GWFQHSLLESCATRG-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 586 PaD~~~eG~Dq~R--gWF~s~ll~~~~~~~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
T Consensus 227 gVd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP--~~~~YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~ 304 (354)
T cd00674 227 GVDFEPFGKDHASSGGSYDTSKEIAREIFGGEPP--EGVMYEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR 304 (354)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 5158835742024675255789999997099999--88416999906998722467861289999976599999999860
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78-7665544310256777640000
Q gi|254780445|r 663 SD-YHDDQRLGKNIIQTNIDTYRKL 686 (963)
Q Consensus 663 ~~-~~~d~~~~~~~l~~~~~~~~kl 686 (963)
T Consensus 305 ~p~~~k~i~fD~~ip~~~Deyd~~~ 329 (354)
T cd00674 305 RKNPAKHIGFDLDIPRLYDEYDRLE 329 (354)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9985532246757567798999999