HHsearch alignment for GI: 254780445 and conserved domain: cd00674

>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.62  E-value=0.00078  Score=44.66  Aligned_cols=99  Identities=22%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             CCCCCCCCCCCCC--HHHHHHHHHHHHCCC-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf             4310025544421--112455444331178-4000013037826213453000012344333664113675788788871
Q gi|254780445|r  586 PADVYLEGSDQHR--GWFQHSLLESCATRG-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN  662 (963)
Q Consensus       586 PaD~~~eG~Dq~R--gWF~s~ll~~~~~~~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~  662 (963)
T Consensus       227 gVd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP--~~~~YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~  304 (354)
T cd00674         227 GVDFEPFGKDHASSGGSYDTSKEIAREIFGGEPP--EGVMYEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR  304 (354)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
T ss_conf             5158835742024675255789999997099999--88416999906998722467861289999976599999999860


Q ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78-7665544310256777640000
Q gi|254780445|r  663 SD-YHDDQRLGKNIIQTNIDTYRKL  686 (963)
Q Consensus       663 ~~-~~~d~~~~~~~l~~~~~~~~kl  686 (963)
T Consensus       305 ~p~~~k~i~fD~~ip~~~Deyd~~~  329 (354)
T cd00674         305 RKNPAKHIGFDLDIPRLYDEYDRLE  329 (354)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9985532246757567798999999