HHsearch alignment for GI: 254780445 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.40 E-value=5e-05 Score=52.91 Aligned_cols=54 Identities=30% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCCCCEECCCCCCHHCCCCCCC
Q ss_conf 344310025544421112455444331--17840000130378262134530000123443
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCA--TRGSTPFTSLITHGFSVDENGEKMSKSKGNVV 642 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~--~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi 642 (963)
T Consensus 148 ~~~~~~vpvG~DQ~---~hiel~Rdia~r~n~~~~--~~l~~pll~g~dG~KMSKS~~N~i 203 (268)
T cd00805 148 YLDVDIQLGGSDQR---GNITLGRDLIRRLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAI 203 (268)
T ss_pred HHCCCCEECCHHHH---HHHHHHHHHHHHHCCCCC--EEEEECEEECCCCCCCCCCCCCCC
T ss_conf 71377146060089---999999999998289761--455311000899874467899950