HHsearch alignment for GI: 254780445 and conserved domain: cd00805

>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.40  E-value=5e-05  Score=52.91  Aligned_cols=54  Identities=30%  Similarity=0.254  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCCCCEECCCCCCHHCCCCCCC
Q ss_conf             344310025544421112455444331--17840000130378262134530000123443
Q gi|254780445|r  584 AWPADVYLEGSDQHRGWFQHSLLESCA--TRGSTPFTSLITHGFSVDENGEKMSKSKGNVV  642 (963)
Q Consensus       584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~--~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi  642 (963)
T Consensus       148 ~~~~~~vpvG~DQ~---~hiel~Rdia~r~n~~~~--~~l~~pll~g~dG~KMSKS~~N~i  203 (268)
T cd00805         148 YLDVDIQLGGSDQR---GNITLGRDLIRRLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAI  203 (268)
T ss_pred             HHCCCCEECCHHHH---HHHHHHHHHHHHHCCCCC--EEEEECEEECCCCCCCCCCCCCCC
T ss_conf             71377146060089---999999999998289761--455311000899874467899950